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Conserved domains on  [gi|1843800452|gb|QJX19313|]
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cytochrome b, partial (mitochondrion) [Phylloscartes oustaleti]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-299 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 620.00  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452   1 LAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSF 80
Cdd:MTH00119   62 LAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSF 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452  81 WGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFMIAGLTLIHLTFLHETGSNNPLGISSNCDKIPF 160
Cdd:MTH00119  142 WGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPF 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 161 HPYYSTKDILGFMFLFLPLLSLTMFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLI 240
Cdd:MTH00119  222 HPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILI 301

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1843800452 241 LFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLFVLTWIGSQPVEHPFIIIGQLASLTYF 299
Cdd:MTH00119  302 LFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYF 360
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-299 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 620.00  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452   1 LAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSF 80
Cdd:MTH00119   62 LAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSF 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452  81 WGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFMIAGLTLIHLTFLHETGSNNPLGISSNCDKIPF 160
Cdd:MTH00119  142 WGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPF 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 161 HPYYSTKDILGFMFLFLPLLSLTMFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLI 240
Cdd:MTH00119  222 HPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILI 301

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1843800452 241 LFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLFVLTWIGSQPVEHPFIIIGQLASLTYF 299
Cdd:MTH00119  302 LFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYF 360
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-299 6.86e-109

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 321.35  E-value: 6.86e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452   1 LAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYlyKE----TWNTGVILLLTLMATAFVGYVLPWG 76
Cdd:COG1290    70 EAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWD 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452  77 QMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIH-FLLPFMIAGLTLIHLTFLHETGSNNPLGI---- 151
Cdd:COG1290   148 QLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkk 227

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 152 SSNCDKIPFHPYYSTKDILGFMFLFLPLLSLTMFSPNllGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIP--NKLG 229
Cdd:COG1290   228 TEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLG 305

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 230 GVLALAASVLILFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLFVLTWIGSQPVehPFIIIGQLASLTYF 299
Cdd:COG1290   306 GVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYF 373
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-146 1.86e-69

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 214.15  E-value: 1.86e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452   1 LAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSY--LYKETWNTGVILLLTLMATAFVGYVLPWGQM 78
Cdd:cd00284    53 LAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQM 132

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1843800452  79 SFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFMIAGLTLIHLTFLHETGSN 146
Cdd:cd00284   133 SYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-144 9.06e-60

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 188.74  E-value: 9.06e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452   1 LAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYG--SYLYKETWNTGVILLLTLMATAFVGYVLPWGQM 78
Cdd:pfam00033  44 LAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQM 123

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1843800452  79 SFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFMIAGLTLIHLTFLHETG 144
Cdd:pfam00033 124 SYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 179-279 6.28e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.81  E-value: 6.28e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 179 LLSLTMFSPNLLGDPenftpANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLTPFL-HMSKQRTMTF 257
Cdd:TIGR01156  51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFR 125

                          90       100
                  ....*....|....*....|..
gi 1843800452 258 RPLSQLLFWIlvtNLFVLTWIG 279
Cdd:TIGR01156 126 RPVATTVFLF---GTVVALWLG 144
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-299 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 620.00  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452   1 LAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSF 80
Cdd:MTH00119   62 LAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSF 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452  81 WGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFMIAGLTLIHLTFLHETGSNNPLGISSNCDKIPF 160
Cdd:MTH00119  142 WGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPF 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 161 HPYYSTKDILGFMFLFLPLLSLTMFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLI 240
Cdd:MTH00119  222 HPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILI 301

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1843800452 241 LFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLFVLTWIGSQPVEHPFIIIGQLASLTYF 299
Cdd:MTH00119  302 LFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYF 360
CYTB MTH00100
cytochrome b; Provisional
 2-299 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 566.96  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452   2 AFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFW 81
Cdd:MTH00100   62 AFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFW 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452  82 GATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFMIAGLTLIHLTFLHETGSNNPLGISSNCDKIPFH 161
Cdd:MTH00100  142 GATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFH 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 162 PYYSTKDILGFMFLFLPLLSLTMFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLIL 241
Cdd:MTH00100  222 PYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILIL 301

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1843800452 242 FLTPFLHMSKQRTMTFRPLSQLLFWILVTNLFVLTWIGSQPVEHPFIIIGQLASLTYF 299
Cdd:MTH00100  302 AIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYF 359
CYTB MTH00131
cytochrome b; Provisional
 2-299 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 566.59  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452   2 AFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFW 81
Cdd:MTH00131   62 AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFW 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452  82 GATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFMIAGLTLIHLTFLHETGSNNPLGISSNCDKIPFH 161
Cdd:MTH00131  142 GATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFH 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 162 PYYSTKDILGFMFLFLPLLSLTMFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLIL 241
Cdd:MTH00131  222 PYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVL 301

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1843800452 242 FLTPFLHMSKQRTMTFRPLSQLLFWILVTNLFVLTWIGSQPVEHPFIIIGQLASLTYF 299
Cdd:MTH00131  302 MVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYF 359
CYTB MTH00074
cytochrome b; Provisional
 1-299 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 541.96  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452   1 LAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSF 80
Cdd:MTH00074   62 SAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSF 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452  81 WGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFMIAGLTLIHLTFLHETGSNNPLGISSNCDKIPF 160
Cdd:MTH00074  142 WGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPF 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 161 HPYYSTKDILGFMFLFLPLLSLTMFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLI 240
Cdd:MTH00074  222 HPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILI 301

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1843800452 241 LFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLFVLTWIGSQPVEHPFIIIGQLASLTYF 299
Cdd:MTH00074  302 LMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYF 360
CYTB MTH00191
cytochrome b; Provisional
 1-299 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 529.10  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452   1 LAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSF 80
Cdd:MTH00191   58 LAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSF 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452  81 WGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFMIAGLTLIHLTFLHETGSNNPLGISSNCDKIPF 160
Cdd:MTH00191  138 WGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPF 217

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 161 HPYYSTKDILGFMFLFLPLLSLTMFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLI 240
Cdd:MTH00191  218 HPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILV 297

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1843800452 241 LFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLFVLTWIGSQPVEHPFIIIGQLASLTYF 299
Cdd:MTH00191  298 LFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYF 356
CYTB MTH00156
cytochrome b; Provisional
 1-299 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 528.20  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452   1 LAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSF 80
Cdd:MTH00156   51 LAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSF 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452  81 WGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFMIAGLTLIHLTFLHETGSNNPLGISSNCDKIPF 160
Cdd:MTH00156  131 WGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPF 210

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 161 HPYYSTKDILGFMFLFLPLLSLTMFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLI 240
Cdd:MTH00156  211 HPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILI 290

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1843800452 241 LFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLFVLTWIGSQPVEHPFIIIGQLASLTYF 299
Cdd:MTH00156  291 LMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYF 349
CYTB MTH00145
cytochrome b; Provisional
 1-299 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 504.05  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452   1 LAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSF 80
Cdd:MTH00145   62 LAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSF 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452  81 WGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFMIAGLTLIHLTFLHETGSNNPLGISSNCDKIPF 160
Cdd:MTH00145  142 WGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPF 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 161 HPYYSTKDILGFMFLFLPLLSLTMFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLI 240
Cdd:MTH00145  222 HPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVI 301

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1843800452 241 LFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLFVLTWIGSQPVEHPFIIIGQLASLTYF 299
Cdd:MTH00145  302 LFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYF 360
CYTB MTH00034
cytochrome b; Validated
 1-299 4.02e-177

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 493.84  E-value: 4.02e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452   1 LAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSF 80
Cdd:MTH00034   61 LAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSF 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452  81 WGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFMIAGLTLIHLTFLHETGSNNPLGISSNCDKIPF 160
Cdd:MTH00034  141 WAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPF 220

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 161 HPYYSTKDILGFMFLFLPLLSLTMFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLI 240
Cdd:MTH00034  221 HTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILV 300

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1843800452 241 LFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLFVLTWIGSQPVEHPFIIIGQLASLTYF 299
Cdd:MTH00034  301 LFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYF 359
CYTB MTH00016
cytochrome b; Validated
 1-299 4.69e-172

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 481.10  E-value: 4.69e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452   1 LAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSF 80
Cdd:MTH00016   62 LAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSF 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452  81 WGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFMIAGLTLIHLTFLHETGSNNPLGISSNCDKIPF 160
Cdd:MTH00016  142 WGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPF 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 161 HPYYSTKDILGFMFLFLPLLSLTMFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLI 240
Cdd:MTH00016  222 HPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILI 301

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1843800452 241 LFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLFVLTWIGSQPVEHPFIIIGQLASLTYF 299
Cdd:MTH00016  302 LFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYF 360
CYTB MTH00022
cytochrome b; Validated
 1-299 1.30e-150

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 426.81  E-value: 1.30e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452   1 LAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSF 80
Cdd:MTH00022   60 LAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSF 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452  81 WGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFMIAGLTLIHLTFLHETGSNNPLGISSNCDKIPF 160
Cdd:MTH00022  140 WGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSF 219

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 161 HPYYSTKDILGFMFLFLPLLSLTMFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLI 240
Cdd:MTH00022  220 HVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILI 299

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1843800452 241 LFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLFVLTWIGSQPVEHPFIIIGQLASLTYF 299
Cdd:MTH00022  300 LFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYF 358
CYTB MTH00053
cytochrome b; Provisional
 1-299 2.84e-148

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 421.04  E-value: 2.84e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452   1 LAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSF 80
Cdd:MTH00053   62 LAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSF 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452  81 WGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFMIAGLTLIHLTFLHETGSNNPLGISSNCDKIPF 160
Cdd:MTH00053  142 WAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPF 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 161 HPYYSTKDILGFMFLFLPLLSLTMFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLI 240
Cdd:MTH00053  222 HYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILV 301

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1843800452 241 LFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLFVLTWIGSQPVEHPFIIIGQLASLTYF 299
Cdd:MTH00053  302 LFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYF 360
CYTB MTH00224
cytochrome b; Provisional
 1-299 1.66e-146

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 416.24  E-value: 1.66e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452   1 LAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSF 80
Cdd:MTH00224   62 MAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSF 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452  81 WGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFMIAGLTLIHLTFLHETGSNNPLGISSNCDKIPF 160
Cdd:MTH00224  142 WGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPF 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 161 HPYYSTKDILGFMFLFLPLLSLTMFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLI 240
Cdd:MTH00224  222 HPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILI 301

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1843800452 241 LFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLFVLTWIGSQPVEHPFIIIGQLASLTYF 299
Cdd:MTH00224  302 LFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYF 360
CYTB MTH00033
cytochrome b; Provisional
 1-299 2.10e-113

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 332.67  E-value: 2.10e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452   1 LAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSF 80
Cdd:MTH00033   58 LAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSF 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452  81 WGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFMIAGLTLIHLTFLHETGSNNPLGISSNCDKIPF 160
Cdd:MTH00033  138 WAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAF 217

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 161 HPYYSTKDILGFMFLFLPLLSLTMFS--PNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASV 238
Cdd:MTH00033  218 HVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASI 297

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1843800452 239 LILFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLFVLTWIGSQPV-EHPFIIIGQLASLTYF 299
Cdd:MTH00033  298 LVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYF 359
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-299 6.86e-109

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 321.35  E-value: 6.86e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452   1 LAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYlyKE----TWNTGVILLLTLMATAFVGYVLPWG 76
Cdd:COG1290    70 EAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWD 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452  77 QMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIH-FLLPFMIAGLTLIHLTFLHETGSNNPLGI---- 151
Cdd:COG1290   148 QLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkk 227

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 152 SSNCDKIPFHPYYSTKDILGFMFLFLPLLSLTMFSPNllGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIP--NKLG 229
Cdd:COG1290   228 TEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLG 305

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 230 GVLALAASVLILFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLFVLTWIGSQPVehPFIIIGQLASLTYF 299
Cdd:COG1290   306 GVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYF 373
CYTB MTH00086
cytochrome b; Provisional
 1-299 7.38e-101

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 299.55  E-value: 7.38e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452   1 LAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSF 80
Cdd:MTH00086   50 MAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSF 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452  81 WGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFMIAGLTLIHLTFLHETGSNNPLGISSNCDKIPF 160
Cdd:MTH00086  130 WAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICF 209

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 161 HPYYSTKDILGFMFLFLpLLSLTMFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLI 240
Cdd:MTH00086  210 GPEYWNKDAYNIIFWLV-FIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVV 288

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1843800452 241 LFLTPFLhmsKQRTMTFRPLSQLLFWILVTNLFVLTWIGSQPVEHPFIIIGQLASLTYF 299
Cdd:MTH00086  289 FYFFIFV---NNYTSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYF 344
CYTB MTH00046
cytochrome b; Validated
 15-296 3.52e-82

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 251.83  E-value: 3.52e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452  15 FGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP 94
Cdd:MTH00046   66 FTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVP 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452  95 YIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFMIAGLTLIHLTFLHETGSNNPLGISSN-CDKIPFHPYYSTKDILGFM 173
Cdd:MTH00046  146 IVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFM 225

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 174 FLFLPLLSLTMFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGvLALAASVLILFLTPflhmSKQR 253
Cdd:MTH00046  226 VVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNG 300

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1843800452 254 TMTFRPLSQLLFWILVTNLFVLTWIGSQPVEHPFIIIGQLASL 296
Cdd:MTH00046  301 SSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSV 343
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-146 1.86e-69

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 214.15  E-value: 1.86e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452   1 LAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSY--LYKETWNTGVILLLTLMATAFVGYVLPWGQM 78
Cdd:cd00284    53 LAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQM 132

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1843800452  79 SFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFMIAGLTLIHLTFLHETGSN 146
Cdd:cd00284   133 SYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-144 9.06e-60

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 188.74  E-value: 9.06e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452   1 LAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYG--SYLYKETWNTGVILLLTLMATAFVGYVLPWGQM 78
Cdd:pfam00033  44 LAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQM 123

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1843800452  79 SFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFMIAGLTLIHLTFLHETG 144
Cdd:pfam00033 124 SYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 147-294 2.25e-55

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 176.30  E-value: 2.25e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 147 NPLGISSNCDKIPFHPYYSTKDILGFMFLFLPLLSLTMFSPNLLGDPENFTPANPLTTPPHIKPEWYFLFAYAILRSIPN 226
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1843800452 227 KLGGVLALAASVLILFLTPFLHMSKQRTmTFRPLSQLLFWILVTNLFVLTWIGSQPVEHPFIIIGQLA 294
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
198-298 1.80e-47

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 154.17  E-value: 1.80e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 198 PANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLFVLTW 277
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1843800452 278 IGSQPVEHPFIIIGQLASLTY 298
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
28-193 2.80e-44

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 148.54  E-value: 2.80e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452  28 SFFFICIYLHIGRGFYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 105
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 106 GGFSVDNPTLTRFFAIHF-LLPFMIAGLTLIHLTFLHETGSNNPLGISSNCDKIPFHPYYSTKDILGFMFLFLPLLSLTM 184
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1843800452 185 FSPNLLGDP 193
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 2-149 3.00e-29

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 110.96  E-value: 3.00e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452   2 AFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMS 79
Cdd:PRK03735   73 AYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKA 152

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1843800452  80 FWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIH-FLLPFMIAGLTLIHLTFLHETGSNNPL 149
Cdd:PRK03735  153 YFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 2-149 2.30e-27

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 105.96  E-value: 2.30e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452   2 AFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMS 79
Cdd:CHL00070   65 AFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIG 144

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1843800452  80 FWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIH-FLLPFMIAGLTLIHLTFLHETGSNNPL 149
Cdd:CHL00070  145 YWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 179-279 7.43e-13

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 65.02  E-value: 7.43e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 179 LLSLTMFSPNLLGDPenftpANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLTPFL-HMSKQRTMTF 257
Cdd:CHL00058   51 NVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFR 125

                          90       100
                  ....*....|....*....|..
gi 1843800452 258 RPLSQLLFWIlvtNLFVLTWIG 279
Cdd:CHL00058  126 RPVATTVFLI---GTAVALWLG 144
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 169-279 7.32e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 62.50  E-value: 7.32e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 169 ILGFMFLflpLLSLTMFSPNLLGDPenftpANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLTPFL- 247
Cdd:COG5679    45 ILGTIAL---CIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIe 116

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1843800452 248 HMSKQRTMTFRPLSQLLFwiLVTNLFVLtWIG 279
Cdd:COG5679   117 NVNKFQNPFRRPVATAVF--LFGTLVTL-WLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 179-279 6.28e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.81  E-value: 6.28e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843800452 179 LLSLTMFSPNLLGDPenftpANPLTTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLTPFL-HMSKQRTMTF 257
Cdd:TIGR01156  51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFR 125

                          90       100
                  ....*....|....*....|..
gi 1843800452 258 RPLSQLLFWIlvtNLFVLTWIG 279
Cdd:TIGR01156 126 RPVATTVFLF---GTVVALWLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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