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Conserved domains on  [gi|1843798471|gb|QJX19364|]
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NADH dehydrogenase 1, partial (mitochondrion) [Cloacotaenia sp. 1025]

Protein Classification

complex I subunit 1 family protein( domain architecture ID 103)

complex I subunit 1 family protein similar to NADH dehydrogenase subunit 1, which is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

EC:  7.1.1.-
Gene Ontology:  GO:0016655|GO:0016020
PubMed:  23417064|24059520
SCOP:  4005664

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06076 super family cl00469
NADH-quinone oxidoreductase subunit NuoH;
1-238 5.13e-101

NADH-quinone oxidoreductase subunit NuoH;


The actual alignment was detected with superfamily member MTH00058:

Pssm-ID: 469782  Cd Length: 293  Bit Score: 295.29  E-value: 5.13e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471   1 DLMKLVFKFKDYSFQSRSYVSLVGVFLLVCLVVFYCLIYGGYYSFSYTEFSFLWFLVVTSFTSYALLCAGWGSYSKYSFL 80
Cdd:MTH00058   52 DLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLL 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  81 GAMRSAFSSVSFEACFMCVIIFCGLCFGGYSLSDYFFSGVWSFVICPLVYICFLICILCETNRTPFDYAESESELVSGFN 160
Cdd:MTH00058  132 SSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLSVLLFPLIYILWLVCILCETNRTPFDYGESESELVSGFN 211

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1843798471 161 TEYSGIFFTCLFACEYIIIFIFSWVGCVLMFGGGvFGSLFLFFHLLFFMWARATLPRIRYDYFVNFFWSVCLPLLIVS 238
Cdd:MTH00058  212 TEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGG-FVSIMLLFHLLFFMWARATLPRVRYDYFVNFFWEYCLVLLILS 288
 
Name Accession Description Interval E-value
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 1-238 5.13e-101

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 295.29  E-value: 5.13e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471   1 DLMKLVFKFKDYSFQSRSYVSLVGVFLLVCLVVFYCLIYGGYYSFSYTEFSFLWFLVVTSFTSYALLCAGWGSYSKYSFL 80
Cdd:MTH00058   52 DLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLL 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  81 GAMRSAFSSVSFEACFMCVIIFCGLCFGGYSLSDYFFSGVWSFVICPLVYICFLICILCETNRTPFDYAESESELVSGFN 160
Cdd:MTH00058  132 SSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLSVLLFPLIYILWLVCILCETNRTPFDYGESESELVSGFN 211

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1843798471 161 TEYSGIFFTCLFACEYIIIFIFSWVGCVLMFGGGvFGSLFLFFHLLFFMWARATLPRIRYDYFVNFFWSVCLPLLIVS 238
Cdd:MTH00058  212 TEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGG-FVSIMLLFHLLFFMWARATLPRVRYDYFVNFFWEYCLVLLILS 288
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 25-237 3.43e-44

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 151.05  E-value: 3.43e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  25 VFLLVCLVVFYCLIYGGYYSFSYTEFSFLWFLVVTSFTSYALLCAGWGSYSKYSFLGAMRSAFSSVSFEACFMCVIIFCG 104
Cdd:COG1005    86 LAFIPALLAFAVIPFGPGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVV 165

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471 105 LCFGGYSLSD---YFFSGVWSFVICPLVYICFLICILCETNRTPFDYAESESELVSGFNTEYSGIFFTCLFACEYIIIFI 181
Cdd:COG1005   166 LLAGSLNLSEiveAQAGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFL 245

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1843798471 182 FSWVGCVLMFGG--GVFGSLFLFF-------------HLLFFMWARATLPRIRYDYFVNFFWSVCLPLLIV 237
Cdd:COG1005   246 VSALATTLFLGGwlGPFPILPLGGlpgilwfllktlfFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
NADHdh pfam00146
NADH dehydrogenase;
1-238 6.20e-43

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 146.85  E-value: 6.20e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471   1 DLMKLVFK-------FKDYSFQSRSYVSLVGVFLLVCLVVFycliyGGYYSFSYTEFSFLWFLVVTSFTSYALLCAGWGS 73
Cdd:pfam00146  47 DALKLLFKediipagADKFLFLLAPIIAFIPALLAFAVIPF-----GPGLVLADLNVGILYILALSSLGVYGILLAGWAS 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  74 YSKYSFLGAMRSAFSSVSFEACFMCVIIFCGLCFGGYSLSDYFF--SGVWSFVICPLVYICFLICILCETNRTPFDYAES 151
Cdd:pfam00146 122 NNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVEaqAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEA 201

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471 152 ESELVSGFNTEYSGIFFTCLFACEYIIIFIFSWVGCVLMFGG--GVFGSLFL-------FFHLLFFMWARATLPRIRYDY 222
Cdd:pfam00146 202 ESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLGGwlGPFPLPGLlwfllkvFFVFFLFIWIRATLPRFRYDQ 281

                         250
                  ....*....|....*.
gi 1843798471 223 FVNFFWSVCLPLLIVS 238
Cdd:pfam00146 282 LMRLGWKVLLPLSLAN 297
 
Name Accession Description Interval E-value
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 1-238 5.13e-101

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 295.29  E-value: 5.13e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471   1 DLMKLVFKFKDYSFQSRSYVSLVGVFLLVCLVVFYCLIYGGYYSFSYTEFSFLWFLVVTSFTSYALLCAGWGSYSKYSFL 80
Cdd:MTH00058   52 DLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLL 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  81 GAMRSAFSSVSFEACFMCVIIFCGLCFGGYSLSDYFFSGVWSFVICPLVYICFLICILCETNRTPFDYAESESELVSGFN 160
Cdd:MTH00058  132 SSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLSVLLFPLIYILWLVCILCETNRTPFDYGESESELVSGFN 211

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1843798471 161 TEYSGIFFTCLFACEYIIIFIFSWVGCVLMFGGGvFGSLFLFFHLLFFMWARATLPRIRYDYFVNFFWSVCLPLLIVS 238
Cdd:MTH00058  212 TEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGG-FVSIMLLFHLLFFMWARATLPRVRYDYFVNFFWEYCLVLLILS 288
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 25-237 3.43e-44

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 151.05  E-value: 3.43e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  25 VFLLVCLVVFYCLIYGGYYSFSYTEFSFLWFLVVTSFTSYALLCAGWGSYSKYSFLGAMRSAFSSVSFEACFMCVIIFCG 104
Cdd:COG1005    86 LAFIPALLAFAVIPFGPGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVV 165

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471 105 LCFGGYSLSD---YFFSGVWSFVICPLVYICFLICILCETNRTPFDYAESESELVSGFNTEYSGIFFTCLFACEYIIIFI 181
Cdd:COG1005   166 LLAGSLNLSEiveAQAGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFL 245

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1843798471 182 FSWVGCVLMFGG--GVFGSLFLFF-------------HLLFFMWARATLPRIRYDYFVNFFWSVCLPLLIV 237
Cdd:COG1005   246 VSALATTLFLGGwlGPFPILPLGGlpgilwfllktlfFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
NADHdh pfam00146
NADH dehydrogenase;
1-238 6.20e-43

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 146.85  E-value: 6.20e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471   1 DLMKLVFK-------FKDYSFQSRSYVSLVGVFLLVCLVVFycliyGGYYSFSYTEFSFLWFLVVTSFTSYALLCAGWGS 73
Cdd:pfam00146  47 DALKLLFKediipagADKFLFLLAPIIAFIPALLAFAVIPF-----GPGLVLADLNVGILYILALSSLGVYGILLAGWAS 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  74 YSKYSFLGAMRSAFSSVSFEACFMCVIIFCGLCFGGYSLSDYFF--SGVWSFVICPLVYICFLICILCETNRTPFDYAES 151
Cdd:pfam00146 122 NNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVEaqAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEA 201

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471 152 ESELVSGFNTEYSGIFFTCLFACEYIIIFIFSWVGCVLMFGG--GVFGSLFL-------FFHLLFFMWARATLPRIRYDY 222
Cdd:pfam00146 202 ESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLGGwlGPFPLPGLlwfllkvFFVFFLFIWIRATLPRFRYDQ 281

                         250
                  ....*....|....*.
gi 1843798471 223 FVNFFWSVCLPLLIVS 238
Cdd:pfam00146 282 LMRLGWKVLLPLSLAN 297
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
25-238 5.00e-41

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 142.64  E-value: 5.00e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  25 VFLLVCLVVFYCLI-------YGGYYSFSYTEFSFLWFLVVTSFTSYALLCAGWGSYSKYSFLGAMRSAFSSVSFEACFM 97
Cdd:PRK06076   80 LFLLAPVIAFIPAFlawavipFGPELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLG 159

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  98 CVIIFCGLCFGGYSLSDYFFS--GVWSFVICPLVYICFLICILCETNRTPFDYAESESELVSGFNTEYSGIFFTCLFACE 175
Cdd:PRK06076  160 LSLLAVVLLAGSLNLSDIVEAqfLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGE 239

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1843798471 176 YIIIFIFSWVGCVLMFGG--GVFGSLFL-----------FFHLLFFMWARATLPRIRYDYFVNFFWSVCLPLLIVS 238
Cdd:PRK06076  240 YINMILVSALITTLFLGGwlPPFPLGGGipgaiwfvlkvAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVN 315
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 26-236 5.69e-40

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 139.62  E-value: 5.69e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  26 FLLVCLVVFYCL----IYGGYYSFSYTEFSFLWFLVVTSFTSYALLCAGWGSYSKYSFLGAMRSAFSSVSFEACFMCVII 101
Cdd:MTH00143   73 FLAPCLSLILALllwqLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILL 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471 102 FCGLCFGGYSLSDYFFSG--VWSFVICPLVYICFLICILCETNRTPFDYAESESELVSGFNTEYSGIFFTCLFACEYIII 179
Cdd:MTH00143  153 FPLFLSGSFSFIEISESQfsVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANI 232

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1843798471 180 FIFSWVGCVLMFGGGVFGSLFLFFHLLFFM--------WARATLPRIRYDYFVNFFWSVCLPLLI 236
Cdd:MTH00143  233 LFMSLLTVVLFFGGSSVLFLLGGVVFMFKVlffaflfiWVRASYPRFRYDLLMMLCWKSFLPFSL 297
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 1-236 6.64e-40

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 139.13  E-value: 6.64e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471   1 DLMKLVFKFKDYSFQSRSYVSLVGVFLLVCLVVFYCLIYGGYYSFSYTEFSFLWFLVVTSFTSYALLCAGWGSYSKYSFL 80
Cdd:MTH00193   53 DAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLL 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  81 GAMRSAFSSVSFEACFMCVIIFCGLCFGGYSLSD--YFFSGVWSFVICPLVYICFLICILCETNRTPFDYAESESELVSG 158
Cdd:MTH00193  133 GSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDfmNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSG 212

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471 159 FNTEYSGIFFTCLFACEYIIIFIFSWVGCVLMFGG---GVFGSLFLFFHLLFFMWARATLPRIRYDYFVNFFWSVCLPLL 235
Cdd:MTH00193  213 FNVEYSSGGFALIFLAEYSSILFMSMLFVLMFLGGdllSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLS 292


                  .
gi 1843798471 236 I 236
Cdd:MTH00193  293 L 293
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 1-234 4.83e-39

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 136.96  E-value: 4.83e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471   1 DLMKLVFKFKDYSFQSRSYVSLVGVFLLVCLVVFYCLIYGGYYSFSYTEFSFLWFLVVTSFTSYALLCAGWGSYSKYSFL 80
Cdd:MTH00218   53 DGVKLFIKEPIRPSTSSPFLFLLAPILALTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALM 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  81 GAMRSAFSSVSFEACFMCVIIFCGLCFGGYSLSDYFFS--GVWSFVICPLVYICFLICILCETNRTPFDYAESESELVSG 158
Cdd:MTH00218  133 GALRAVAQTISYEVSLGLIILSLIILTGGFSLEGFNLTqeTIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSG 212

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471 159 FNTEYSGIFFTCLFACEYIIIFIFSWVgCVLMFGGGVFGSLF----LFFHLLFFMWARATLPRIRYDYFVNFFWSVCLPL 234
Cdd:MTH00218  213 FNVEYSGGPFALFFLAEYMNILFMNTL-SVILFLGTSLTTINlmlkATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPL 291
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 1-234 5.41e-37

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 131.70  E-value: 5.41e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471   1 DLMKLVFKFKDYSFQSRSYVSLVGVFLLVCLVVFYCLIYGGYYSFSYTEFSFLWFLVVTSFTSYALLCAGWGSYSKYSFL 80
Cdd:MTH00225   52 DALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALL 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  81 GAMRSAFSSVSFEACfMCVIIFCGL-CFGGYSLSDYFFSG--VWSFVICPLVYICFLICILCETNRTPFDYAESESELVS 157
Cdd:MTH00225  132 GALRAVAQTISYEVS-MALILLSIVfLVLTYNLFDFSYNQkyFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVS 210

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471 158 GFNTEYSGIFFTCLFACEYIIIFIFSWVGCVLMFGGGVFGSLFLF-----FHLLFFMWARATLPRIRYDYFVNFFWSVCL 232
Cdd:MTH00225  211 GFNIEYSSGGFALIFMAEYGSILFMSMLTSILFFGGFFVTIDLFLilkimLLAFWFIWVRGVLPRMRYDKLMSLTWKSFL 290


                  ..
gi 1843798471 233 PL 234
Cdd:MTH00225  291 PL 292
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 18-237 2.14e-35

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 127.55  E-value: 2.14e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  18 SYVSLVGVFLLVCLVVFYCLI----YGGYYSFSYTEFSFLWFLVVTSFTSYALLCAGWGSYSKYSFLGAMRSAFSSVSFE 93
Cdd:MTH00195   66 STSSLWLFFFAPVLALALALIlwvpIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYE 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  94 ACfMCVIIFCGLC-FGGYSLS--DYFFSGVWSFVICPLVYICFLICILCETNRTPFDYAESESELVSGFNTEYSGIFFTC 170
Cdd:MTH00195  146 VS-MGLIILCPIClAGSFDFTimVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFAL 224

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1843798471 171 LFACEYIIIFIFSWVGCVLMFGGGVFGSLFL--FFHLLFFMWARATLPRIRYDYFVNFFWSVCLPLLIV 237
Cdd:MTH00195  225 IFMAEYSNIIFMSVLTTILFLGGGGTIIVALksLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILS 293
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 31-234 4.31e-34

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 124.46  E-value: 4.31e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  31 LVVFYCLIYGGYYSFSYTEFSFLWFLVVTSFTSYALLCAGWGSYSKYSFLGAMRSAFSSVSFEACFMCVIIFCGLCFGGY 110
Cdd:MTH00216   89 LIVWGVIPYERGVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSL 168

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471 111 SLSDYFF---SGVWSFVICPLVYICFLICILCETNRTPFDYAESESELVSGFNTEYSGIFFTCLFACEY----------I 177
Cdd:MTH00216  169 SITEIVLaqnNGIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYahiilmscltT 248

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1843798471 178 IIFIFSWVGCVLMFGGGVFG-SLFLFFHLLFFMWARATLPRIRYDYFVNFFWSVCLPL 234
Cdd:MTH00216  249 ILFLGGWLSPIKYFKGGAGWfGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPL 306
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 27-234 7.67e-34

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 123.68  E-value: 7.67e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  27 LLVCLVVFYCLIYGGYYSFSYTEFSFLWFLVVTSFTSYALLCAGWGSYSKYSFLGAMRSAFSSVSFEACFMCVIIFCGLC 106
Cdd:MTH00054   81 LTLAFIAWGVIPYGEGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLC 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471 107 FGGYSLSDYFFSGVWSFVICPL--VYICFLICILCETNRTPFDYAESESELVSGFNTEYSGIFFTCLFACEYIIIFIFSW 184
Cdd:MTH00054  161 VGSLNLTEIVLAQKNIWFIFPLfpAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMST 240

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1843798471 185 VGCVLMFGGGVFGSLFLFFHLLFFM-------------WARATLPRIRYDYFVNFFWSVCLPL 234
Cdd:MTH00054  241 FGVILFLGGWLVISGPTSYFSNFVWfgikialiiflfiWIRASYPRIRYDQLMALLWKSYLPL 303
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 38-234 3.27e-32

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 119.11  E-value: 3.27e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  38 IYGGYYSFSYTEFSFLWFLVVTSFTSYALLCAGWGSYSKYSFLGAMRSAFSSVSFEACFMCVIIFCGLCFGGYSLSDYFF 117
Cdd:MTH00010   91 LYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFSKIIM 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471 118 SGV-WSFVICPLVYICFLICILCETNRTPFDYAESESELVSGFNTEYSGIFFTCLFACEYIIIFIFSWVGCVLMFGGGVF 196
Cdd:MTH00010  171 SQYsWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFFTSFIPS 250

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1843798471 197 GSLF-------LFFHLLFFMWARATLPRIRYDYFVNFFWSVCLPL 234
Cdd:MTH00010  251 IFISdlmlilkTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPM 295
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 50-236 1.23e-29

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 112.76  E-value: 1.23e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  50 FSFLWFLVVTSFTSYALLCAGWGSYSKYSFLGAMRSAFSSVSFEACFMCVIIFCGLCFGGYSLSDYFFS--GVWSFVIC- 126
Cdd:MTH00040  104 LSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSFSLSSISNSqnGSWLLFPCl 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471 127 PLVYICFlICILCETNRTPFDYAESESELVSGFNTEYSGIFFTCLFACEYIIIFIFSWVGCVLMFGGGVFGSLFL----- 201
Cdd:MTH00040  184 PLFYIWF-ISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVILFLGGGSPFNEIFpinii 262

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1843798471 202 ------FFHLLFFMWARATLPRIRYDYFVNFFWSVCLPLLI 236
Cdd:MTH00040  263 ivgiktTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSI 303
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 53-234 1.59e-29

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 112.80  E-value: 1.59e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  53 LWFLVVTSFTSYALLCAGWGSYSKYSFLGAMRSAFSSVSFEACFMCVIIFCGLCFGGYSLSDYFFSGVWSFVICPL--VY 130
Cdd:MTH00029  112 LYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNISEIVISQRSVWLIIPLfpAA 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471 131 ICFLICILCETNRTPFDYAESESELVSGFNTEYSGIFFTCLFACEYIIIFIFSWVGCVLMFGG------------GVFGS 198
Cdd:MTH00029  192 IMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIFFLGGwlspldgiptppEAFSI 271

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1843798471 199 LFLFF--------------HLLFFMWARATLPRIRYDYFVNFFWSVCLPL 234
Cdd:MTH00029  272 FEQIAsskssfwfftkssiFILFFIWSRASFPRIRYDQLMKLLWKTYLPL 321
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 43-236 7.57e-29

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 110.48  E-value: 7.57e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  43 YSFSYTEFSFLWFLVVTSFTSYALLCAGWGSYSKYSFLGAMRSAFSSVSFEACfMCVIIFCGLCF-GGYSLSDYFFSGVW 121
Cdd:MTH00071   98 NNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVT-LGLILLCLILLtGGFSLMNFNTTQEF 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471 122 SFVICPLVYICFL--ICILCETNRTPFDYAESESELVSGFNTEYSGIFFTCLFACEYIIIFIFSWVGCVLMFGGGVFGSL 199
Cdd:MTH00071  177 MWLIIPAWPMAAMwfISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLSTILFLGSTYNHLQ 256

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1843798471 200 FLFFHLLFFM----------WARATLPRIRYDYFVNFFWSVCLPLLI 236
Cdd:MTH00071  257 PELSTMNLMIkasilsmlflWVRASYPRFRYDQLMHLVWKNFLPITL 303
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 52-234 1.62e-28

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 109.60  E-value: 1.62e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  52 FLWFLVVTSFTSYALLCAGWGSYSKYSFLGAMRSAFSSVSFEACF----MCVIIFCGlcfgGYSLSD--------YFFSG 119
Cdd:MTH00111  107 LLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLgiilLSLILLSG----GYTLQTlattqeplWLIFS 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471 120 VWsfvicPLVYICFlICILCETNRTPFDYAESESELVSGFNTEYSGIFFTCLFACEYIIIFIFSWVGCVLMFGGGVFGSL 199
Cdd:MTH00111  183 SW-----PLAMMWY-ISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTTILFLNPSTLNLP 256

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1843798471 200 FLFFHLLFFM----------WARATLPRIRYDYFVNFFWSVCLPL 234
Cdd:MTH00111  257 PELFTINLMTktllltsgflWIRASYPRFRYDQLMHLLWKQFLPL 301
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 1-237 1.66e-28

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 108.83  E-value: 1.66e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471   1 DLMKLVFKFKDYSFQSRSYVSLVGVFLLVCLVVFYCLIYGGYYSFSYTEFSFLWFLVVTSFTSYALLCAGWGSYSKYSFL 80
Cdd:MTH00090   47 DGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFL 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  81 GAMRSAFSSVSFEACFMCVIIFCGLCFGGYSLSDYFfsgVWSFVIcplVYICFLICILCETNRTPFDYAESESELVSGFN 160
Cdd:MTH00090  127 GALRASSQSISYEIAFSLYLLSIMLHNNSFSFVSSF---SLSLFV---IYLPFLIMIIAELNRAPFDFSEGESELVSGYN 200

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1843798471 161 TEYSGIFFTCLFACEYIIIFIFSWVGCVLMFGggvFGSLFLFFHLLFFMWARATLPRIRYDYFVNFFWSVCLPLLIV 237
Cdd:MTH00090  201 VEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK---FSFLMLFLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLI 274
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 53-234 6.45e-27

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 105.46  E-value: 6.45e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  53 LWFLVVTSFTSYALLCAGWGSYSKYSFLGAMRSAFSSVSFEACF----MCVIIFCGlcfgGYSLSDYFFS--GVWSFV-I 125
Cdd:MTH00134  109 LFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLglilLSVIIFTG----GFTLQTFNTAqeSIWLLLpA 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471 126 CPLVYICFlICILCETNRTPFDYAESESELVSGFNTEYSGIFFTCLFACEYIIIFIFSWVGCVLMFGGGVFGSL------ 199
Cdd:MTH00134  185 WPLAAMWY-ISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLGASHIPTLpeltti 263

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1843798471 200 ----FLFFHLLFFMWARATLPRIRYDYFVNFFWSVCLPL 234
Cdd:MTH00134  264 nlmtKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPL 302
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 51-234 1.89e-23

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 95.85  E-value: 1.89e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  51 SFLWFLVVTSFTSYALLCAGWGSYSKYSFLGAMRSAFSSVSFEACFMCVIIFCGLCFGGYSLSDYFFSGVWSFVIC---P 127
Cdd:MTH00104  101 GVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLITTQEHLWLIFpswP 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471 128 LVYICFlICILCETNRTPFDYAESESELVSGFNTEYSGIFFTCLFACEYIIIFIFSWVGCVLMFGG----------GVFG 197
Cdd:MTH00104  181 LAMMWF-ISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILFLGAfhnpympelyTTNF 259

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1843798471 198 SLFLFFHLLFFMWARATLPRIRYDYFVNFFWSVCLPL 234
Cdd:MTH00104  260 TIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPL 296
ndhA CHL00032
NADH dehydrogenase subunit 1
 52-234 3.39e-19

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 85.00  E-value: 3.39e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  52 FLWfLVVTSFTSYALLCAGWGSYSKYSFLGAMRSAFSSVSFEacfmcviIFCGLCFGGYSL--------------SDYFF 117
Cdd:CHL00032  132 FLW-IAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYE-------IPLTLCVLSISLlsnslstvdiveaqSKYGF 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471 118 SGvWSFVICPLVYICFLICILCETNRTPFDYAESESELVSGFNTEYSGIFFTCLFACEYIIIFIFSWVGCVLMFGG---- 193
Cdd:CHL00032  204 WG-WNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGwnls 282

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1843798471 194 ----------------GVFGSLFLFFHLLFFMW--------ARATLPRIRYDYFVNFFWSVCLPL 234
Cdd:CHL00032  283 ipyifipelfeinktgGVFGTTIGIFITLAKTYlflfisitTRWTLPRLRMDQLLNLGWKFLLPI 347
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
19-228 1.05e-12

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 65.97  E-value: 1.05e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  19 YVSLVGVFLLVCLVVFycLIYGGYYSFSYTEFSFLWFLVVTSFtsyALLCAGWGSYSKYSFLGAMRSAFSSVSFEACFMC 98
Cdd:COG0650    70 YVALAAMLLAALLVPV--LTTGPPLSFSGDLIVLVYLLALARF---FLALAGLDSGSPFGGIGASREMTLSALAEPPLLL 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1843798471  99 VIIFCGLCFGGYSLSDYF----FSGVWSF-VICPLVYICFLICILCETNRTPFDYAESESELVSGFNTEYSGIFFTCLFA 173
Cdd:COG0650   145 VLFALALLAGSTSLSDIVayqaAHGPLLLsPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLEL 224

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1843798471 174 CEYIIIFIFSWVGCVLMFGGGVFGSLFLFFHLLFFMWA---------RATLPRIRYDYFVNFFW 228
Cdd:COG0650   225 AAALKLFVLLSLFVNLFLPWGIALTLLLALLLFLLKLLvlavllaviEASTARLRLFRVPDFLW 288
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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