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Conserved domains on  [gi|1842033246|ref|YP_009820167|]
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hypothetical protein HOV20_gp17 [Escherichia phage NC-A]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5471 super family cl10215
Family of unknown function (DUF5471); This is a family of unknown function found in ...
 1-70 5.16e-21

Family of unknown function (DUF5471); This is a family of unknown function found in Enterobacteria phage T7.


The actual alignment was detected with superfamily member pfam17565:

Pssm-ID: 353063  Cd Length: 70  Bit Score: 77.54  E-value: 5.16e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1842033246  1 MFKLIKKLGKLLVRLYNVEAKRLNDEARNEATQSRALAIRSNELADSASNKVTEAARVASQAQQLSKFFE 70
Cdd:pfam17565  1 MFKLIKKLGQLLVRMYNVEAKRLNDEARKEATQSRALAIRSNELADSASTKVTEAARVANQAQQLSKFFE 70
 
Name Accession Description Interval E-value
DUF5471 pfam17565
Family of unknown function (DUF5471); This is a family of unknown function found in ...
 1-70 5.16e-21

Family of unknown function (DUF5471); This is a family of unknown function found in Enterobacteria phage T7.


Pssm-ID: 340280  Cd Length: 70  Bit Score: 77.54  E-value: 5.16e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1842033246  1 MFKLIKKLGKLLVRLYNVEAKRLNDEARNEATQSRALAIRSNELADSASNKVTEAARVASQAQQLSKFFE 70
Cdd:pfam17565  1 MFKLIKKLGQLLVRMYNVEAKRLNDEARKEATQSRALAIRSNELADSASTKVTEAARVANQAQQLSKFFE 70
PHA00448 PHA00448
hypothetical protein
 1-70 9.46e-18

hypothetical protein


Pssm-ID: 133894  Cd Length: 70  Bit Score: 69.59  E-value: 9.46e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1842033246  1 MFKLIKKLGKLLVRLYNVEAKRLNDEARNEATQSRALAIRSNELADSASNKVTEAARVASQAQQLSKFFE 70
Cdd:PHA00448   1 MFKFINTLGKLVVKLYFVEAKRLNDKARKDATRARRLAKQSRELSDAASAGVTEAARIAAKAQQLSKFFE 70
 
Name Accession Description Interval E-value
DUF5471 pfam17565
Family of unknown function (DUF5471); This is a family of unknown function found in ...
 1-70 5.16e-21

Family of unknown function (DUF5471); This is a family of unknown function found in Enterobacteria phage T7.


Pssm-ID: 340280  Cd Length: 70  Bit Score: 77.54  E-value: 5.16e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1842033246  1 MFKLIKKLGKLLVRLYNVEAKRLNDEARNEATQSRALAIRSNELADSASNKVTEAARVASQAQQLSKFFE 70
Cdd:pfam17565  1 MFKLIKKLGQLLVRMYNVEAKRLNDEARKEATQSRALAIRSNELADSASTKVTEAARVANQAQQLSKFFE 70
PHA00448 PHA00448
hypothetical protein
 1-70 9.46e-18

hypothetical protein


Pssm-ID: 133894  Cd Length: 70  Bit Score: 69.59  E-value: 9.46e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1842033246  1 MFKLIKKLGKLLVRLYNVEAKRLNDEARNEATQSRALAIRSNELADSASNKVTEAARVASQAQQLSKFFE 70
Cdd:PHA00448   1 MFKFINTLGKLVVKLYFVEAKRLNDKARKDATRARRLAKQSRELSDAASAGVTEAARIAAKAQQLSKFFE 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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