NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1842025495|ref|YP_009812538|]
View 

tail assembly chaperone [Vibrio phage 1.202.O._10N.222.45.E8]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Phage_TAC_10 super family cl12538
Phage tail assembly chaperone; This is a family of phage tail assembly chaperone proteins.
 4-86 6.26e-18

Phage tail assembly chaperone; This is a family of phage tail assembly chaperone proteins.


The actual alignment was detected with superfamily member pfam10963:

Pssm-ID: 431560  Cd Length: 82  Bit Score: 70.95  E-value: 6.26e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1842025495  4 IVLTVGETDLEFNPTPAEHDEAQNTILTGDASAAAHNFLVSCVSDGSKDALRDITnENAGAAMQIYGALIKEYTPKLVIS 83
Cdd:pfam10963  1 ITLNVNGVDFTFEPTPEAYNKYINELTMNNKVAPSHNYLMRIVARESKDALKEIL-AMPGAAVQLAAKVNEEYAPELEIT 79


                 ...
gi 1842025495 84 VKK 86
Cdd:pfam10963 80 VKN 82
 
Name Accession Description Interval E-value
Phage_TAC_10 pfam10963
Phage tail assembly chaperone; This is a family of phage tail assembly chaperone proteins.
 4-86 6.26e-18

Phage tail assembly chaperone; This is a family of phage tail assembly chaperone proteins.


Pssm-ID: 431560  Cd Length: 82  Bit Score: 70.95  E-value: 6.26e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1842025495  4 IVLTVGETDLEFNPTPAEHDEAQNTILTGDASAAAHNFLVSCVSDGSKDALRDITnENAGAAMQIYGALIKEYTPKLVIS 83
Cdd:pfam10963  1 ITLNVNGVDFTFEPTPEAYNKYINELTMNNKVAPSHNYLMRIVARESKDALKEIL-AMPGAAVQLAAKVNEEYAPELEIT 79


                 ...
gi 1842025495 84 VKK 86
Cdd:pfam10963 80 VKN 82
 
Name Accession Description Interval E-value
Phage_TAC_10 pfam10963
Phage tail assembly chaperone; This is a family of phage tail assembly chaperone proteins.
 4-86 6.26e-18

Phage tail assembly chaperone; This is a family of phage tail assembly chaperone proteins.


Pssm-ID: 431560  Cd Length: 82  Bit Score: 70.95  E-value: 6.26e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1842025495  4 IVLTVGETDLEFNPTPAEHDEAQNTILTGDASAAAHNFLVSCVSDGSKDALRDITnENAGAAMQIYGALIKEYTPKLVIS 83
Cdd:pfam10963  1 ITLNVNGVDFTFEPTPEAYNKYINELTMNNKVAPSHNYLMRIVARESKDALKEIL-AMPGAAVQLAAKVNEEYAPELEIT 79


                 ...
gi 1842025495 84 VKK 86
Cdd:pfam10963 80 VKN 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH