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Conserved domains on  [gi|1842000912|ref|YP_009788778|]
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DNA repair exonuclease [Pectobacterium phage PP99]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HTH_ASNC super family cl42958
helix_turn_helix ASNC type; AsnC: an autogenously regulated activator of asparagine synthetase ...
 5-45 9.71e-04

helix_turn_helix ASNC type; AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli)


The actual alignment was detected with superfamily member smart00344:

Pssm-ID: 214628 [Multi-domain]  Cd Length: 108  Bit Score: 38.27  E-value: 9.71e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1842000912    5 TDEQLKESLV--AKLTVREIASKFGMSERAVQVRKAKLAKAGY 45
Cdd:smart00344   4 IDRKILEELQkdARISLAELAKKVGLSPSTVHNRVKRLEEEGV 46
 
Name Accession Description Interval E-value
HTH_ASNC smart00344
helix_turn_helix ASNC type; AsnC: an autogenously regulated activator of asparagine synthetase ...
 5-45 9.71e-04

helix_turn_helix ASNC type; AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli)


Pssm-ID: 214628 [Multi-domain]  Cd Length: 108  Bit Score: 38.27  E-value: 9.71e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1842000912    5 TDEQLKESLV--AKLTVREIASKFGMSERAVQVRKAKLAKAGY 45
Cdd:smart00344   4 IDRKILEELQkdARISLAELAKKVGLSPSTVHNRVKRLEEEGV 46
 
Name Accession Description Interval E-value
HTH_ASNC smart00344
helix_turn_helix ASNC type; AsnC: an autogenously regulated activator of asparagine synthetase ...
 5-45 9.71e-04

helix_turn_helix ASNC type; AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli)


Pssm-ID: 214628 [Multi-domain]  Cd Length: 108  Bit Score: 38.27  E-value: 9.71e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1842000912    5 TDEQLKESLV--AKLTVREIASKFGMSERAVQVRKAKLAKAGY 45
Cdd:smart00344   4 IDRKILEELQkdARISLAELAKKVGLSPSTVHNRVKRLEEEGV 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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