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Conserved domains on  [gi|1841998994|ref|YP_009786926|]
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hypothetical protein HOR25_gp32 [Serratia phage SM9-3Y]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA01327 PHA01327
hypothetical protein
 1-46 3.15e-13

hypothetical protein


:

Pssm-ID: 222821  Cd Length: 49  Bit Score: 56.24  E-value: 3.15e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 1841998994  1 MRTNFEKFTKRDSVVNEHGEQWQERRDRMKKRHKQQRGNSQKREWN 46
Cdd:PHA01327   1 MRTNFEPFTKRNNVINEHGEEWQERKDRMKKRHKTQRGNSEKRNWK 46
 
Name Accession Description Interval E-value
PHA01327 PHA01327
hypothetical protein
 1-46 3.15e-13

hypothetical protein


Pssm-ID: 222821  Cd Length: 49  Bit Score: 56.24  E-value: 3.15e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 1841998994  1 MRTNFEKFTKRDSVVNEHGEQWQERRDRMKKRHKQQRGNSQKREWN 46
Cdd:PHA01327   1 MRTNFEPFTKRNNVINEHGEEWQERKDRMKKRHKTQRGNSEKRNWK 46
Phage_1_1 pfam08200
Bacteriophage 1.1 Protein; Gene 1.1 in Bacteriophage T7 encodes a 42 amino acid protein, rich ...
 4-46 3.35e-09

Bacteriophage 1.1 Protein; Gene 1.1 in Bacteriophage T7 encodes a 42 amino acid protein, rich in basic amino acids suggesting its interaction with nucleic acids. Many homologs are present in different T7 and T3-like bacteriophage.


Pssm-ID: 369745  Cd Length: 45  Bit Score: 46.18  E-value: 3.35e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 1841998994  4 NFEKFTKRDSVVNEHGEQWQERRDRMKKRHKQQRGNSQKREWN 46
Cdd:pfam08200  3 NFEKMTKRANRNNEDGFEWQERRDKGKKRNKPQRDRSSKRNWE 45
 
Name Accession Description Interval E-value
PHA01327 PHA01327
hypothetical protein
 1-46 3.15e-13

hypothetical protein


Pssm-ID: 222821  Cd Length: 49  Bit Score: 56.24  E-value: 3.15e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 1841998994  1 MRTNFEKFTKRDSVVNEHGEQWQERRDRMKKRHKQQRGNSQKREWN 46
Cdd:PHA01327   1 MRTNFEPFTKRNNVINEHGEEWQERKDRMKKRHKTQRGNSEKRNWK 46
Phage_1_1 pfam08200
Bacteriophage 1.1 Protein; Gene 1.1 in Bacteriophage T7 encodes a 42 amino acid protein, rich ...
 4-46 3.35e-09

Bacteriophage 1.1 Protein; Gene 1.1 in Bacteriophage T7 encodes a 42 amino acid protein, rich in basic amino acids suggesting its interaction with nucleic acids. Many homologs are present in different T7 and T3-like bacteriophage.


Pssm-ID: 369745  Cd Length: 45  Bit Score: 46.18  E-value: 3.35e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 1841998994  4 NFEKFTKRDSVVNEHGEQWQERRDRMKKRHKQQRGNSQKREWN 46
Cdd:pfam08200  3 NFEKMTKRANRNNEDGFEWQERRDKGKKRNKPQRDRSSKRNWE 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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