|
Name |
Accession |
Description |
Interval |
E-value |
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
3-228 |
2.10e-120 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 341.25 E-value: 2.10e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 3 EPMLELSGIVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKRT 82
Cdd:COG1136 2 SPLLELRNLTKSYGTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERELA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 83 EVRRRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALAN 162
Cdd:COG1136 82 RLRRRHIGFVFQFFNLLPELTALENVALPLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVN 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 163 GPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRMDRVFEMSDGLLVEHAR 228
Cdd:COG1136 162 RPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPELAARADRVIRLRDGRIVSDER 227
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
6-223 |
1.42e-106 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 305.95 E-value: 1.42e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKRTEVR 85
Cdd:cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 86 RRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPG 165
Cdd:cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1840515274 166 LLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRMDRVFEMSDGLL 223
Cdd:cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
|
| LolD_lipo_ex |
TIGR02211 |
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ... |
5-225 |
2.26e-91 |
|
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 267.68 E-value: 2.26e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKRTEV 84
Cdd:TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 RRRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGP 164
Cdd:TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQP 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1840515274 165 GLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRMDRVFEMSDGLLVE 225
Cdd:TIGR02211 161 SLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-228 |
1.52e-84 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 250.81 E-value: 1.52e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGK 80
Cdd:COG4181 4 SSAPIIELRGLTKTVGTGAGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDEDA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 81 RTEVRRRSVGFVYQFHHLLPEFSALENIVLPQMINGVakRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARAL 160
Cdd:COG4181 84 RARLRARHVGFVFQSFQLLPTLTALENVMLPLELAGR--RDARARARALLERVGLGHRLDHYPAQLSGGEQQRVALARAF 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1840515274 161 ANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRMDRVFEMSDGLLVEHAR 228
Cdd:COG4181 162 ATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALAARCDRVLRLRAGRLVEDTA 229
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
5-228 |
1.82e-78 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 234.95 E-value: 1.82e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFeqaGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALddgKRTEV 84
Cdd:COG2884 1 MIRFENVSKRY---PGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRL---KRREI 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 R--RRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALAN 162
Cdd:COG2884 75 PylRRRIGVVFQDFRLLPDRTVYENVALPLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVN 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1840515274 163 GPGLLIADEPTGNLDPHTAEGVFAMLTTIvrqARVGA--LIATHNLELANRMD-RVFEMSDGLLVEHAR 228
Cdd:COG2884 155 RPELLLADEPTGNLDPETSWEIMELLEEI---NRRGTtvLIATHDLELVDRMPkRVLELEDGRLVRDEA 220
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
1-226 |
2.47e-78 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 235.10 E-value: 2.47e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGK 80
Cdd:PRK11629 1 MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 81 RTEVRRRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARAL 160
Cdd:PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARAL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 161 ANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRMDRVFEMSDGLLVEH 226
Cdd:PRK11629 161 VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAE 226
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
5-229 |
9.03e-69 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 214.17 E-value: 9.03e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKRTEV 84
Cdd:COG1135 1 MIELENLSKTFPTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERELRAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 RRRsVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGP 164
Cdd:COG1135 81 RRK-IGMIFQHFNLLSSRTVAENVALPLEIAGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 165 GLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVEHARV 229
Cdd:COG1135 160 KVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRIcDRVAVLENGRIVEQGPV 225
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-221 |
9.20e-69 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 211.49 E-value: 9.20e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIagtdvsaldDGK 80
Cdd:COG1116 3 AAAPALELRGVSKRFPTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLV---------DGK 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 81 RTEVRRRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARAL 160
Cdd:COG1116 74 PVTGPGPDRGVVFQEPALLPWLTVLDNVALGLELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARAL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 161 ANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDG 221
Cdd:COG1116 154 ANDPEVLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHDVDEAVFLaDRVVVLSAR 215
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
5-229 |
5.02e-68 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 208.97 E-value: 5.02e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKRTEV 84
Cdd:cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 RRRsVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGP 164
Cdd:cd03258 81 RRR-IGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 165 GLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVEHARV 229
Cdd:cd03258 160 KVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRIcDRVAVMEKGEVVEEGTV 225
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
4-224 |
1.87e-67 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 218.82 E-value: 1.87e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 4 PMLELSGIVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKRTE 83
Cdd:PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 84 VRRRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANG 163
Cdd:PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNG 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1840515274 164 PGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVgALIATHNLELANRMDRVFEMSDGLLV 224
Cdd:PRK10535 163 GQVILADEPTGALDSHSGEEVMAILHQLRDRGHT-VIIVTHDPQVAAQAERVIEIRDGEIV 222
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
6-219 |
1.24e-66 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 204.63 E-value: 1.24e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSAlddgkrtevR 85
Cdd:cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG---------P 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 86 RRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPG 165
Cdd:cd03293 72 GPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPD 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1840515274 166 LLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMS 219
Cdd:cd03293 152 VLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLaDRVVVLS 206
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
4-224 |
5.94e-66 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 204.14 E-value: 5.94e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 4 PMLELSGIVRTFeqaGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKRTE 83
Cdd:COG3638 1 PMLELRNLSKRY---PGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRALRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 84 VRRRsVGFVYQFHHLLPEFSALENIV--------LPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVA 155
Cdd:COG3638 78 LRRR-IGMIFQQFNLVPRLSVLTNVLagrlgrtsTWRSLLGLFPPEDRERALEALERVGLADKAYQRADQLSGGQQQRVA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 156 IARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANR-MDRVFEMSDGLLV 224
Cdd:COG3638 157 IARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRyADRIIGLRDGRVV 226
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
5-227 |
3.38e-64 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 199.06 E-value: 3.38e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFEqagtELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSalDDGKRTEV 84
Cdd:COG1126 1 MIEIENLHKSFG----DLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLT--DSKKDINK 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 RRRSVGFVYQFHHLLPEFSALENIVLPQM-INGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANG 163
Cdd:COG1126 75 LRRKVGMVFQQFNLFPHLTVLENVTLAPIkVKKMSKAEAEERAMELLERVGLADKADAYPAQLSGGQQQRVAIARALAME 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1840515274 164 PGLLIADEPTGNLDPHTAEGVfamLTTIVRQARVGA--LIATHNLELANRM-DRVFEMSDGLLVEHA 227
Cdd:COG1126 155 PKVMLFDEPTSALDPELVGEV---LDVMRDLAKEGMtmVVVTHEMGFAREVaDRVVFMDGGRIVEEG 218
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-221 |
5.71e-62 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 197.24 E-value: 5.71e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIVRTFeqagTELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLlERPTAGTVRIAGTDVSALddg 79
Cdd:COG3842 1 MAMPALELENVSKRY----GDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRmIAGF-ETPDSGRILLDGRDVTGL--- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 80 krtEVRRRSVGFVYQ----FHHLlpefSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVA 155
Cdd:COG3842 73 ---PPEKRNVGMVFQdyalFPHL----TVAENVAFGLRMRGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQQRVA 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1840515274 156 IARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDG 221
Cdd:COG3842 146 LARALAPEPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHDQEEALALaDRIAVMNDG 212
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
19-221 |
7.45e-61 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 189.77 E-value: 7.45e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 19 GTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDdGKRTEVRRRSVGFVYQFHHL 98
Cdd:TIGR02673 12 PGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLR-GRQLPLLRRRIGVVFQDFRL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 99 LPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDP 178
Cdd:TIGR02673 91 LPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDP 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1840515274 179 HTAEGVFAMLTTIVRQArVGALIATHNLELANRMD-RVFEMSDG 221
Cdd:TIGR02673 171 DLSERILDLLKRLNKRG-TTVIVATHDLSLVDRVAhRVIILDDG 213
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
6-227 |
8.62e-61 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 189.65 E-value: 8.62e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFEqagtELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLlERPTAGTVRIAGTDVSALddgkrtEV 84
Cdd:cd03259 1 LELKGLSKTYG----SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRlIAGL-ERPDSGEILIDGRDVTGV------PP 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 RRRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGP 164
Cdd:cd03259 70 ERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREP 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1840515274 165 GLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVEHA 227
Cdd:cd03259 150 SLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALaDRIAVMNEGRIVQVG 213
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-229 |
4.68e-59 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 193.97 E-value: 4.68e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIVRTFEQAGT-ELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDG 79
Cdd:COG1123 256 AAEPLLEVRNLSKRYPVRGKgGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRR 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 80 KRTEVRRRsVGFVYQ--FHHLLPEFSALENIVLPQMINGVA-KRTARERALELLRMVGLEPRAGHR-PARLSGGEQQRVA 155
Cdd:COG1123 336 SLRELRRR-VQMVFQdpYSSLNPRMTVGDIIAEPLRLHGLLsRAERRERVAELLERVGLPPDLADRyPHELSGGQRQRVA 414
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1840515274 156 IARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVEHARV 229
Cdd:COG1123 415 IARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIaDRVAVMYDGRIVEDGPT 489
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
25-223 |
1.26e-58 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 184.15 E-value: 1.26e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 25 LRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDdGKRTEVRRRSVGFVYQFHHLLPEFSA 104
Cdd:cd03292 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLR-GRAIPYLRRKIGVVFQDFRLLPDRNV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 105 LENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGV 184
Cdd:cd03292 96 YENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEI 175
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1840515274 185 FAMLTTIvRQARVGALIATHNLELANRMD-RVFEMSDGLL 223
Cdd:cd03292 176 MNLLKKI-NKAGTTVVVATHAKELVDTTRhRVIALERGKL 214
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
21-221 |
2.24e-58 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 183.50 E-value: 2.24e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 21 ELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSalDDGKRTEVRRRSVGFVYQFHHLLP 100
Cdd:cd03262 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLT--DDKKNINELRQKVGMVFQQFNLFP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 101 EFSALENIVLPQM-INGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPH 179
Cdd:cd03262 90 HLTVLENITLAPIkVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPE 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1840515274 180 TAEGVfamLTTIVRQARVGA--LIATHNLELANRM-DRVFEMSDG 221
Cdd:cd03262 170 LVGEV---LDVMKDLAEEGMtmVVVTHEMGFAREVaDRVIFMDDG 211
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-226 |
2.25e-58 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 184.41 E-value: 2.25e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIVRTFEqagtELQVLRGAELTVHAGELVALVGPSGAGKSTLL-HIAGLLeRPTAGTVRIAGTDVSALDDG 79
Cdd:COG1127 1 MSEPMIEVRNLTKSFG----DRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLkLIIGLL-RPDSGEILVDGQDITGLSEK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 80 KRTEVRRRsVGFVYQFHHLlpeFSAL---ENIVLP-QMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVA 155
Cdd:COG1127 76 ELYELRRR-IGMLFQGGAL---FDSLtvfENVAFPlREHTDLSEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRVA 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 156 IARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVEH 226
Cdd:COG1127 152 LARALALDPEILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIaDRVAVLADGKIIAE 223
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
2-227 |
8.04e-58 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 182.67 E-value: 8.04e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 2 SEPMLELSGIVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKR 81
Cdd:PRK10584 3 AENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEAR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 82 TEVRRRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALA 161
Cdd:PRK10584 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFN 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 162 NGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRMDRVFEMSDGLLVEHA 227
Cdd:PRK10584 163 GRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEEA 228
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
5-227 |
2.94e-57 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 181.16 E-value: 2.94e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLlERPTAGTVRIAGTDVSALDDgKRTE 83
Cdd:cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARaILGL-LKPTSGSIIFDGKDLLKLSR-RLRK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 84 VRRRSVGFVYQ--FHHLLPEFSALENIVLPQMINGVAKRTA--RERALELLRMVGLEPRAGHR-PARLSGGEQQRVAIAR 158
Cdd:cd03257 79 IRRKEIQMVFQdpMSSLNPRMTIGEQIAEPLRIHGKLSKKEarKEAVLLLLVGVGLPEEVLNRyPHELSGGQRQRVAIAR 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 159 ALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVEHA 227
Cdd:cd03257 159 ALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIaDRVAVMYAGKIVEEG 228
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
5-229 |
3.86e-56 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 181.92 E-value: 3.86e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKRTEv 84
Cdd:PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRK- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 RRRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGP 164
Cdd:PRK11153 80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 165 GLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVEHARV 229
Cdd:PRK11153 160 KVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRIcDRVAVIDAGRLVEQGTV 225
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
5-229 |
1.03e-55 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 178.07 E-value: 1.03e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSalddGKRTEV 84
Cdd:COG1124 1 MLEVRNLSVSYGQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVT----RRRRKA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 RRRSVGFVYQ-----FHhllPEFSALENIVLPQMINGVAKRtaRERALELLRMVGLEPRAGHR-PARLSGGEQQRVAIAR 158
Cdd:COG1124 77 FRRRVQMVFQdpyasLH---PRHTVDRILAEPLRIHGLPDR--EERIAELLEQVGLPPSFLDRyPHQLSGGQRQRVAIAR 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 159 ALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVEHARV 229
Cdd:COG1124 152 ALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLcDRVAVMQNGRIVEELTV 223
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
21-224 |
1.15e-55 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 177.14 E-value: 1.15e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 21 ELQVLRGAELTVHAGELVALVGPSGAGKSTLL-HIAGLLeRPTAGTVRIAGTDVSALDdgkRTEVRRRsVGFVYQFhhll 99
Cdd:COG1122 13 GTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLrLLNGLL-KPTSGEVLVDGKDITKKN---LRELRRK-VGLVFQN---- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 100 PE---FSA---------LENIvlpqminGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLL 167
Cdd:COG1122 84 PDdqlFAPtveedvafgPENL-------GLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1840515274 168 IADEPTGNLDPHTAEGVFAMLTTIvRQARVGALIATHNLELANRM-DRVFEMSDGLLV 224
Cdd:COG1122 157 VLDEPTAGLDPRGRRELLELLKRL-NKEGKTVIIVTHDLDLVAELaDRVIVLDDGRIV 213
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
6-229 |
5.66e-55 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 175.64 E-value: 5.66e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFEqagtELQVLRGAELTVHAGELVALVGPSGAGKSTLL-HIAGLLeRPTAGTVRIAGTDVSAlddgKRTEV 84
Cdd:COG1131 1 IEVRGLTKRYG----DKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIrMLLGLL-RPTSGEVRVLGEDVAR----DPAEV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 RRRsVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGP 164
Cdd:COG1131 72 RRR-IGYVPQEPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDP 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 165 GLLIADEPTGNLDPHTAEGVFAMLTTIVRQARvGALIATHNLELANRM-DRVFEMSDGLLVEHARV 229
Cdd:COG1131 151 ELLILDEPTSGLDPEARRELWELLRELAAEGK-TVLLSTHYLEEAERLcDRVAIIDKGRIVADGTP 215
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
6-224 |
1.83e-54 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 174.68 E-value: 1.83e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFEQAGtelQVLRGAELTVHAGELVALVGPSGAGKSTLL-HIAGLLErPTAGTVRIAGTDVSALDDGKRTEV 84
Cdd:cd03256 1 IEVENLSKTYPNGK---KALKDVSLSINPGEFVALIGPSGAGKSTLLrCLNGLVE-PTSGSVLIDGTDINKLKGKALRQL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 RRRsVGFVYQFHHLLPEFSALENIV---LPQM-----INGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAI 156
Cdd:cd03256 77 RRQ-IGMIFQQFNLIERLSVLENVLsgrLGRRstwrsLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAI 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1840515274 157 ARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANR-MDRVFEMSDGLLV 224
Cdd:cd03256 156 ARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREyADRIVGLKDGRIV 224
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
14-221 |
1.24e-53 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 171.50 E-value: 1.24e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 14 TFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLL-HIAGLLeRPTAGTVRIAGTDVSALDDGKRtevrRRSVGFV 92
Cdd:cd03225 6 SFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLrLLNGLL-GPTSGEVLVDGKDLTKLSLKEL----RRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 93 YQFhhllPE--FSAL---ENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLL 167
Cdd:cd03225 81 FQN----PDdqFFGPtveEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDIL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1840515274 168 IADEPTGNLDPHTAEGVFAMLTTIvRQARVGALIATHNLE-LANRMDRVFEMSDG 221
Cdd:cd03225 157 LLDEPTAGLDPAGRRELLELLKKL-KAEGKTIIIVTHDLDlLLELADRVIVLEDG 210
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
5-224 |
6.15e-52 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 168.25 E-value: 6.15e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFeqaGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKRTEV 84
Cdd:TIGR02315 1 MLEVENLSKVY---PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 RRRsVGFVYQFHHLLPEFSALENIVLP--------QMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAI 156
Cdd:TIGR02315 78 RRR-IGMIFQHYNLIERLTVLENVLHGrlgykptwRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAI 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1840515274 157 ARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANR-MDRVFEMSDGLLV 224
Cdd:TIGR02315 157 ARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKyADRIVGLKAGEIV 225
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
23-218 |
1.59e-51 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 165.87 E-value: 1.59e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKRTEVRRRSVGFVYQFHHLLPEF 102
Cdd:TIGR03608 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRREKLGYLFQNFALIENE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 103 SALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAE 182
Cdd:TIGR03608 92 TVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRD 171
|
170 180 190
....*....|....*....|....*....|....*.
gi 1840515274 183 GVFAMLTTIVRQARVgALIATHNLELANRMDRVFEM 218
Cdd:TIGR03608 172 EVLDLLLELNDEGKT-IIIVTHDPEVAKQADRVIEL 206
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
6-221 |
1.68e-51 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 165.76 E-value: 1.68e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFEQAgtelQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDdgkRTEVR 85
Cdd:COG4619 1 LELEGLSFRVGGK----PILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMP---PPEWR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 86 RRsVGFVYQFHHLLPEfSALENIVLPQMINGvaKRTARERALELLRMVGLEPRAGHRPA-RLSGGEQQRVAIARALANGP 164
Cdd:COG4619 74 RQ-VAYVPQEPALWGG-TVRDNLPFPFQLRE--RKFDRERALELLERLGLPPDILDKPVeRLSGGERQRLALIRALLLQP 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1840515274 165 GLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDG 221
Cdd:COG4619 150 DVLLLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVaDRVLTLEAG 207
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
3-229 |
3.68e-51 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 173.17 E-value: 3.68e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 3 EPMLELSGIvrTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLERP--TAGTVRIAGTDVSALDDg 79
Cdd:COG1123 2 TPLLEVRDL--SVRYPGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALaLMGLLPHGgrISGEVLLDGRDLLELSE- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 80 krtEVRRRSVGFVYQ--FHHLLPEfSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIA 157
Cdd:COG1123 79 ---ALRGRRIGMVFQdpMTQLNPV-TVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIA 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1840515274 158 RALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVEHARV 229
Cdd:COG1123 155 MALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIaDRVVVMDDGRIVEDGPP 227
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
1-225 |
3.72e-51 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 169.17 E-value: 3.72e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSepmLELSGIVRTFEQagteLQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLlERPTAGTVRIAGTDVSAlddg 79
Cdd:COG1118 1 MS---IEVRNISKRFGS----FTLLDDVSLEIASGELVALLGPSGSGKTTLLRiIAGL-ETPDSGRIVLNGRDLFT---- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 80 kRTEVRRRSVGFVYQfHHLL-PEFSALENI-----VLPqmingVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQR 153
Cdd:COG1118 69 -NLPPRERRVGFVFQ-HYALfPHMTVAENIafglrVRP-----PSKAEIRARVEELLELVQLEGLADRYPSQLSGGQRQR 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1840515274 154 VAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVE 225
Cdd:COG1118 142 VALARALAVEPEVLLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELaDRVVVMNQGRIEQ 214
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
5-224 |
1.06e-50 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 167.94 E-value: 1.06e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFEqagtELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLlERPTAGTVRIAGTDVSALddgkrtE 83
Cdd:COG3839 3 SLELENVSKSYG----GVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRmIAGL-EDPTSGEILIGGRDVTDL------P 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 84 VRRRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANG 163
Cdd:COG3839 72 PKDRNIAMVFQSYALYPHMTVYENIAFPLKLRKVPKAEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVRE 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1840515274 164 PGLLIADEPTGNLDPHTAEgvfAMLTTIVR-QARVGA--LIATHNLELANRM-DRVFEMSDGLLV 224
Cdd:COG3839 152 PKVFLLDEPLSNLDAKLRV---EMRAEIKRlHRRLGTttIYVTHDQVEAMTLaDRIAVMNDGRIQ 213
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
5-211 |
6.77e-50 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 162.95 E-value: 6.77e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFEQAgtelQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSalddGKRTEV 84
Cdd:PRK09493 1 MIEFKNVSKHFGPT----QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVN----DPKVDE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 R--RRSVGFVYQFHHLLPEFSALENIVL-PQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALA 161
Cdd:PRK09493 73 RliRQEAGMVFQQFYLFPHLTALENVMFgPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALA 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1840515274 162 NGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQArVGALIATHNLELANR 211
Cdd:PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEG-MTMVIVTHEIGFAEK 201
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
6-221 |
9.03e-50 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 160.43 E-value: 9.03e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFEQAgtelQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDgkRTEVR 85
Cdd:cd03229 1 LELKNVSKRYGQK----TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLED--ELPPL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 86 RRSVGFVYQFHHLLPEFSALENIVLPqmingvakrtareralellrmvglepraghrparLSGGEQQRVAIARALANGPG 165
Cdd:cd03229 75 RRRIGMVFQDFALFPHLTVLENIALG----------------------------------LSGGQQQRVALARALAMDPD 120
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1840515274 166 LLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDG 221
Cdd:cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLaDRVVVLRDG 177
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
23-226 |
3.44e-49 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 160.95 E-value: 3.44e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGT--DVSALDDGKRTEVRRRSVGFVYQFHHLLP 100
Cdd:PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNhfDFSKTPSDKAIRELRRNVGMVFQQYNLWP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 101 EFSALEN-IVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPH 179
Cdd:PRK11124 96 HLTVQQNlIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 180 -TAEGVfamltTIVR---QARVGALIATHNLELANRM-DRVFEMSDGLLVEH 226
Cdd:PRK11124 176 iTAQIV-----SIIRelaETGITQVIVTHEVEVARKTaSRVVYMENGHIVEQ 222
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
17-224 |
1.47e-48 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 160.31 E-value: 1.47e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 17 QAGT--ELQVLRGAELTVHAGELVALVGPSGAGKSTLL-HIAGLLeRPTAGTVRIAGTDVSALDDGKRTEVRRRsVGFVY 93
Cdd:TIGR04521 11 QPGTpfEKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIqHLNGLL-KPTSGTVTIDGRDITAKKKKKLKDLRKK-VGLVF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 94 QFhhllPEFSALENIVL------PQMInGVAKRTARERALELLRMVGLEPRAGHR-PARLSGGEQQRVAIARALANGPGL 166
Cdd:TIGR04521 89 QF----PEHQLFEETVYkdiafgPKNL-GLSEEEAEERVKEALELVGLDEEYLERsPFELSGGQMRRVAIAGVLAMEPEV 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1840515274 167 LIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLE-LANRMDRVFEMSDGLLV 224
Cdd:TIGR04521 164 LILDEPTAGLDPKGRKEILDLFKRLHKEKGLTVILVTHSMEdVAEYADRVIVMHKGKIV 222
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
6-225 |
1.87e-48 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 158.82 E-value: 1.87e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFEqagtELQVLRGAELTVHAGELVALVGPSGAGKSTLL-HIAGLLeRPTAGTVRIAGTDVSALDDGKRTEV 84
Cdd:cd03261 1 IELRGLTKSFG----GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLrLIVGLL-RPDSGEVLIDGEDISGLSEAELYRL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 RRRsVGFVYQFHHLLPEFSALENIVLPQMINGV-AKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANG 163
Cdd:cd03261 76 RRR-MGMLFQSGALFDSLTVFENVAFPLREHTRlSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALD 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1840515274 164 PGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVE 225
Cdd:cd03261 155 PELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIaDRIAVLYDGKIVA 217
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
23-226 |
4.18e-48 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 158.25 E-value: 4.18e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGT--DVSALDDGKRTEVRRRSVGFVYQFHHLLP 100
Cdd:COG4161 16 QALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHqfDFSQKPSEKAIRLLRQKVGMVFQQYNLWP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 101 EFSALEN-IVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPH 179
Cdd:COG4161 96 HLTVMENlIEAPCKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 180 -TAEGVfamltTIVR---QARVGALIATHNLELANRM-DRVFEMSDGLLVEH 226
Cdd:COG4161 176 iTAQVV-----EIIRelsQTGITQVIVTHEVEFARKVaSQVVYMEKGRIIEQ 222
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
21-227 |
5.15e-48 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 157.34 E-value: 5.15e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 21 ELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLE----RPTAGTVRIAGTDVSALDDgKRTEVRRRsVGFVYQF 95
Cdd:cd03260 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRlLNRLNDlipgAPDEGEVLLDGKDIYDLDV-DVLELRRR-VGMVFQK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 96 HHLLPeFSALENIVLPQMINGVAKRTAR-ERALELLRMVGLEPRAGHR--PARLSGGEQQRVAIARALANGPGLLIADEP 172
Cdd:cd03260 90 PNPFP-GSIYDNVAYGLRLHGIKLKEELdERVEEALRKAALWDEVKDRlhALGLSGGQQQRLCLARALANEPEVLLLDEP 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 173 TGNLDPHTAEGV------FAMLTTIVrqarvgalIATHNLELANRM-DRVFEMSDGLLVEHA 227
Cdd:cd03260 169 TSALDPISTAKIeeliaeLKKEYTIV--------IVTHNMQQAARVaDRTAFLLNGRLVEFG 222
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
25-225 |
1.18e-47 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 157.81 E-value: 1.18e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 25 LRGAELTVHAGELVALVGPSGAGKSTLL-HIAGLLErPTAGTVRIAGTDVSALDDGKRTEVRRRSVGFVYQFHHLLPEFS 103
Cdd:cd03294 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLrCINRLIE-PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRT 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 104 ALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEG 183
Cdd:cd03294 119 VLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRRE 198
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1840515274 184 VFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVE 225
Cdd:cd03294 199 MQDELLRLQAELQKTIVFITHDLDEALRLgDRIAIMKDGRLVQ 241
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
23-221 |
4.16e-47 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 155.97 E-value: 4.16e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTDVSALddgKRTEVRRRsVGFVYQFHHLLPE 101
Cdd:COG1120 15 PVLDDVSLSLPPGEVTALLGPNGSGKSTLLRaLAGLL-KPSSGEVLLDGRDLASL---SRRELARR-IAYVPQEPPAPFG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 102 FSALENIVL---PQM-INGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLD 177
Cdd:COG1120 90 LTVRELVALgryPHLgLFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLLLLDEPTSHLD 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1840515274 178 PHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDG 221
Cdd:COG1120 170 LAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYaDRLVLLKDG 214
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
3-221 |
5.09e-47 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 154.90 E-value: 5.09e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 3 EPMLELSGIVRTF---EQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRI----AGTDVSA 75
Cdd:COG4778 2 TTLLEVENLSKTFtlhLQGGKRLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVrhdgGWVDLAQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 76 LDDGKRTEVRRRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGH-RPARLSGGEQQRV 154
Cdd:COG4778 82 ASPREILALRRRTIGYVSQFLRVIPRVSALDVVAEPLLERGVDREEARARARELLARLNLPERLWDlPPATFSGGEQQRV 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1840515274 155 AIARALANGPGLLIADEPTGNLDPHTAEGVFAMLttivRQARVG--ALIA-THNLELANRM-DRVFEMSDG 221
Cdd:COG4778 162 NIARGFIADPPLLLLDEPTASLDAANRAVVVELI----EEAKARgtAIIGiFHDEEVREAVaDRVVDVTPF 228
|
|
| OpuBA |
COG1125 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
5-224 |
6.39e-47 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440742 [Multi-domain] Cd Length: 306 Bit Score: 157.17 E-value: 6.39e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFeQAGTElqVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDdgkrtEV 84
Cdd:COG1125 1 MIEFENVTKRY-PDGTV--AVDDLSLTIPAGEFTVLVGPSGCGKTTTLRMINRLIEPTSGRILIDGEDIRDLD-----PV 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 R-RRSVGFVYQFHHLLPEFSALENIVL-PQMiNGVAKRTARERALELLRMVGLEPRA-GHR-PARLSGGEQQRVAIARAL 160
Cdd:COG1125 73 ElRRRIGYVIQQIGLFPHMTVAENIATvPRL-LGWDKERIRARVDELLELVGLDPEEyRDRyPHELSGGQQQRVGVARAL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1840515274 161 ANGPGLLIADEPTGNLDPhtaegvfamlttIVR----------QARVGALIA--THNLELANRM-DRVFEMSDGLLV 224
Cdd:COG1125 152 AADPPILLMDEPFGALDP------------ITReqlqdellrlQRELGKTIVfvTHDIDEALKLgDRIAVMREGRIV 216
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
5-225 |
9.15e-47 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 155.29 E-value: 9.15e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFEQAgtelQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGT--DVSALDDGKRT 82
Cdd:PRK11264 3 AIEVKNLVKKFHGQ----TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDItiDTARSLSQQKG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 83 EVR--RRSVGFVYQFHHLLPEFSALENIVL-PQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARA 159
Cdd:PRK11264 79 LIRqlRQHVGFVFQNFNLFPHRTVLENIIEgPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARA 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1840515274 160 LANGPGLLIADEPTGNLDPhtaEGVFAMLTTI--VRQARVGALIATHNLELANRM-DRVFEMSDGLLVE 225
Cdd:PRK11264 159 LAMRPEVILFDEPTSALDP---ELVGEVLNTIrqLAQEKRTMVIVTHEMSFARDVaDRAIFMDQGRIVE 224
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
25-173 |
9.52e-47 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 151.65 E-value: 9.52e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 25 LRGAELTVHAGELVALVGPSGAGKSTLL-HIAGLLeRPTAGTVRIAGTDVSALDDgkrtEVRRRSVGFVYQFHHLLPEFS 103
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLkLIAGLL-SPTEGTILLDGQDLTDDER----KSLRKEIGYVFQDPQLFPRLT 75
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1840515274 104 ALENIVLPQMINGVAKRTARERALELLRMVGLEP----RAGHRPARLSGGEQQRVAIARALANGPGLLIADEPT 173
Cdd:pfam00005 76 VRENLRLGLLLKGLSKREKDARAEEALEKLGLGDladrPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPT 149
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
4-209 |
4.81e-46 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 153.48 E-value: 4.81e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 4 PMLELSGIVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLErPTAGTVRIAGTDVSAlDDGKRt 82
Cdd:COG4525 2 SMLTVRHVSVRYPGGGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNlIAGFLA-PSSGEITLDGVPVTG-PGADR- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 83 evrrrsvGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALAN 162
Cdd:COG4525 79 -------GVVFQKDALLPWLNVLDNVAFGLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAA 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1840515274 163 GPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELA 209
Cdd:COG4525 152 DPRFLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITHSVEEA 198
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
5-229 |
5.44e-46 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 155.21 E-value: 5.44e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLERP--TAGTVRIAGTDVSALDDGKR 81
Cdd:COG0444 1 LLEVRNLKVYFPTRRGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARaILGLLPPPgiTSGEILFDGEDLLKLSEKEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 82 TEVRRRSVGFVYQ--FHHLLPEFSALENIVLPQMINGVA-KRTARERALELLRMVGLEP---RAGHRPARLSGGEQQRVA 155
Cdd:COG0444 81 RKIRGREIQMIFQdpMTSLNPVMTVGDQIAEPLRIHGGLsKAEARERAIELLERVGLPDperRLDRYPHELSGGMRQRVM 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1840515274 156 IARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVEHARV 229
Cdd:COG0444 161 IARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIaDRVAVMYAGRIVEEGPV 235
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-223 |
7.10e-46 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 152.55 E-value: 7.10e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIVRTFEQAgtelQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTDVSAlddg 79
Cdd:COG1121 2 MMMPAIELENLTVSYGGR----PVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKaILGLL-PPTSGTVRLFGKPPRR---- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 80 krtevRRRSVGFVYQFHHLLPEF--SALEnIVL----PQM-INGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQ 152
Cdd:COG1121 73 -----ARRRIGYVPQRAEVDWDFpiTVRD-VVLmgryGRRgLFRRPSRADREAVDEALERVGLEDLADRPIGELSGGQQQ 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 153 RVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIvRQARVGALIATHNLELANRM-DRVFEMSDGLL 223
Cdd:COG1121 147 RVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLREL-RREGKTILVVTHDLGAVREYfDRVLLLNRGLV 217
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
30-225 |
2.04e-45 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 151.30 E-value: 2.04e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 30 LTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDdgkrtEVR-RRSVGFVYQFHHLLPEFSALENI 108
Cdd:cd03295 22 LEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQD-----PVElRRKIGYVIQQIGLFPHMTVEENI 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 109 VLPQMINGVAKRTARERALELLRMVGLEPR--AGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFA 186
Cdd:cd03295 97 ALVPKLLKWPKEKIRERADELLALVGLDPAefADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQE 176
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1840515274 187 MLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVE 225
Cdd:cd03295 177 EFKRLQQELGKTIVFVTHDIDEAFRLaDRIAIMKNGEIVQ 216
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
23-224 |
2.57e-44 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 148.10 E-value: 2.57e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALddgKRTEVR--RRSVGFVYQFHHLLP 100
Cdd:PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRL---KNREVPflRRQIGMIFQDHHLLM 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 101 EFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHT 180
Cdd:PRK10908 93 DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1840515274 181 AEGVFAMLTTIVRQArVGALIATHNLEL-ANRMDRVFEMSDGLLV 224
Cdd:PRK10908 173 SEGILRLFEEFNRVG-VTVLMATHDIGLiSRRSYRMLTLSDGHLH 216
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-229 |
4.58e-44 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 154.46 E-value: 4.58e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKS-TLLHIAGLLERPTA---GTVRIAGTDVSAL 76
Cdd:COG4172 2 MSMPLLSVEDLSVAFGQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSvTALSILRLLPDPAAhpsGSILFDGQDLLGL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 77 DDGKRTEVRRRSVGFVYQfhhllpE-FSAL-----------ENIVLPQminGVAKRTARERALELLRMVGL---EPRAGH 141
Cdd:COG4172 82 SERELRRIRGNRIAMIFQ------EpMTSLnplhtigkqiaEVLRLHR---GLSGAAARARALELLERVGIpdpERRLDA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 142 RPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSD 220
Cdd:COG4172 153 YPHQLSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFaDRVAVMRQ 232
|
....*....
gi 1840515274 221 GLLVEHARV 229
Cdd:COG4172 233 GEIVEQGPT 241
|
|
| PhnT2 |
TIGR03265 |
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ... |
2-221 |
7.96e-44 |
|
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274496 [Multi-domain] Cd Length: 353 Bit Score: 150.19 E-value: 7.96e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 2 SEPMLELSGIVRTFEQagteLQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKR 81
Cdd:TIGR03265 1 SSPYLSIDNIRKRFGA----FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 82 tevrrrSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALA 161
Cdd:TIGR03265 77 ------DYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1840515274 162 NGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDG 221
Cdd:TIGR03265 151 TSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMaDRIVVMNHG 211
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
6-221 |
1.17e-42 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 143.92 E-value: 1.17e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFEQAgtelQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDdgkrteVR 85
Cdd:cd03300 1 IELENVSKFYGGF----VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP------PH 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 86 RRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPG 165
Cdd:cd03300 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1840515274 166 LLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDG 221
Cdd:cd03300 151 VLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMsDRIAVMNKG 207
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
5-226 |
1.19e-42 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 144.23 E-value: 1.19e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFEQAgtelQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTDVSalddgKRTE 83
Cdd:COG4555 1 MIEVENLSKKYGKV----PALKDVSFTAKDGEITGLLGPNGAGKTTLLRmLAGLL-KPDSGSILIDGEDVR-----KEPR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 84 VRRRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANG 163
Cdd:COG4555 71 EARRQIGVLPDERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHD 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1840515274 164 PGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVgALIATHNLELANRM-DRVFEMSDGLLVEH 226
Cdd:COG4555 151 PKVLLLDEPTNGLDVMARRLLREILRALKKEGKT-VLFSSHIMQEVEALcDRVVILHKGKVVAQ 213
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
2-224 |
4.66e-42 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 143.26 E-value: 4.66e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 2 SEPMLELSGIVRTFeqaGtELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTDVSALDDGK 80
Cdd:COG0411 1 SDPLLEVRGLTKRF---G-GLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNlITGFY-RPTSGRILFDGRDITGLPPHR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 81 RTevrRRSVGFVYQFHHLLPEFSALENIVLPQMINGVAK---------------RTARERALELLRMVGLEPRAGHRPAR 145
Cdd:COG0411 76 IA---RLGIARTFQNPRLFPELTVLENVLVAAHARLGRGllaallrlprarreeREARERAEELLERVGLADRADEPAGN 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1840515274 146 LSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNlelanrMDRVFEMSDGLLV 224
Cdd:COG0411 153 LSYGQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHD------MDLVMGLADRIVV 225
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
4-178 |
1.09e-41 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 142.25 E-value: 1.09e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 4 PMLELSGIVRTFEqagtELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVsALDDGKRTE 83
Cdd:COG4598 7 PALEVRDLHKSFG----DLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEEI-RLKPDRDGE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 84 VR----------RRSVGFVYQFHHLLPEFSALENIVL-PQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQ 152
Cdd:COG4598 82 LVpadrrqlqriRTRLGMVFQSFNLWSHMTVLENVIEaPVHVLGRPKAEAIERAEALLAKVGLADKRDAYPAHLSGGQQQ 161
|
170 180
....*....|....*....|....*.
gi 1840515274 153 RVAIARALANGPGLLIADEPTGNLDP 178
Cdd:COG4598 162 RAAIARALAMEPEVMLFDEPTSALDP 187
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
19-221 |
2.03e-41 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 138.67 E-value: 2.03e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 19 GTELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLErPTAGTVRIAGTDVSALDdgkrTEVRRRSVGFVYQFHH 97
Cdd:cd03228 12 GRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKlLLRLYD-PTSGEILIDGVDLRDLD----LESLRKNIAYVPQDPF 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 98 LlpeFSA--LENIvlpqmingvakrtareralellrmvglepraghrparLSGGEQQRVAIARALANGPGLLIADEPTGN 175
Cdd:cd03228 87 L---FSGtiRENI-------------------------------------LSGGQRQRIAIARALLRDPPILILDEATSA 126
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1840515274 176 LDPHTAEGVFAMLTTIvrQARVGALIATHNLELANRMDRVFEMSDG 221
Cdd:cd03228 127 LDPETEALILEALRAL--AKGKTVIVIAHRLSTIRDADRIIVLDDG 170
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
6-221 |
4.98e-41 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 140.17 E-value: 4.98e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFEQAgtelQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDdgkrteVR 85
Cdd:cd03296 3 IEVRNVSKRFGDF----VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP------VQ 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 86 RRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKR----TARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALA 161
Cdd:cd03296 73 ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERppeaEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1840515274 162 NGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHN----LELAnrmDRVFEMSDG 221
Cdd:cd03296 153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDqeeaLEVA---DRVVVMNKG 213
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
6-221 |
7.67e-41 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 138.79 E-value: 7.67e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFEQAGTelQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSAlddgKRTEVR 85
Cdd:cd03263 1 LQIRNLTKTYKKGTK--PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT----DRKAAR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 86 RrSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAgHRPAR-LSGGEQQRVAIARALANGP 164
Cdd:cd03263 75 Q-SLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-NKRARtLSGGMKRKLSLAIALIGGP 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1840515274 165 GLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVgaLIATHNLELANRM-DRVFEMSDG 221
Cdd:cd03263 153 SVLLLDEPTSGLDPASRRAIWDLILEVRKGRSI--ILTTHSMDEAEALcDRIAIMSDG 208
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
6-225 |
8.66e-41 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 138.54 E-value: 8.66e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFEqagtELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLlERPTAGTVRIAGTDVSALDDGKRtev 84
Cdd:cd03301 1 VELENVTKRFG----NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRmIAGL-EEPTSGRIYIGGRDVTDLPPKDR--- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 rrrSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGP 164
Cdd:cd03301 73 ---DIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREP 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1840515274 165 GLLIADEPTGNLDphtAEGVFAMLTTIVR-QARVGA--LIATHNLELANRM-DRVFEMSDGLLVE 225
Cdd:cd03301 150 KVFLMDEPLSNLD---AKLRVQMRAELKRlQQRLGTttIYVTHDQVEAMTMaDRIAVMNDGQIQQ 211
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
2-220 |
9.99e-41 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 145.16 E-value: 9.99e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 2 SEPMLELSGIVRTFeqAGTelQVLRGAELTVHAGELVALVGPSGAGKSTLLHI-AGlLERPTAGTVRIAGTDVSALDDgk 80
Cdd:COG1129 1 AEPLLEMRGISKSF--GGV--KALDGVSLELRPGEVHALLGENGAGKSTLMKIlSG-VYQPDSGEILLDGEPVRFRSP-- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 81 rTEVRRRSVGFVYQFHHLLPEFSALENIVLPQMING---VAKRTARERALELLRMVGLE--PRAghRPARLSGGEQQRVA 155
Cdd:COG1129 74 -RDAQAAGIAIIHQELNLVPNLSVAENIFLGREPRRgglIDWRAMRRRARELLARLGLDidPDT--PVGDLSVAQQQLVE 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1840515274 156 IARALANGPGLLIADEPTGNLDPHTAEGVFAmlttIVRQAR---VGALIATHnlelanRMDRVFEMSD 220
Cdd:COG1129 151 IARALSRDARVLILDEPTASLTEREVERLFR----IIRRLKaqgVAIIYISH------RLDEVFEIAD 208
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
6-224 |
1.14e-40 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 138.72 E-value: 1.14e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFeqagTELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTDVSALddgKRTEV 84
Cdd:cd03219 1 LEVRGLTKRF----GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNlISGFL-RPTSGSVLFDGEDITGL---PPHEI 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 RRRSVGFVYQFHHLLPEFSALENIVLP-QMINGVA---------KRTARERALELLRMVGLEPRAGHRPARLSGGEQQRV 154
Cdd:cd03219 73 ARLGIGRTFQIPRLFPELTVLENVMVAaQARTGSGlllararreEREARERAEELLERVGLADLADRPAGELSYGQQRRL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 155 AIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIvRQARVGALIATHNlelanrMDRVFEMSDGLLV 224
Cdd:cd03219 153 EIARALATDPKLLLLDEPAAGLNPEETEELAELIREL-RERGITVLLVEHD------MDVVMSLADRVTV 215
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
2-228 |
1.70e-40 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 145.29 E-value: 1.70e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 2 SEPMLELSGIVRTFEQAGTelqVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTDVSALDDgk 80
Cdd:COG4988 333 GPPSIELEDVSFSYPGGRP---ALDGLSLTIPPGERVALVGPSGAGKSTLLNlLLGFL-PPYSGSILINGVDLSDLDP-- 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 81 rtEVRRRSVGFVYQFHHLLPEfSALENIvlpQMINGVAKRTARERALE---LLRMV-----GLEPRAGHRPARLSGGEQQ 152
Cdd:COG4988 407 --ASWRRQIAWVPQNPYLFAG-TIRENL---RLGRPDASDEELEAALEaagLDEFVaalpdGLDTPLGEGGRGLSGGQAQ 480
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 153 RVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVgaLIATHNLELANRMDRVFEMSDGLLVEHAR 228
Cdd:COG4988 481 RLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGRTV--ILITHRLALLAQADRILVLDDGRIVEQGT 554
|
|
| proV |
TIGR01186 |
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine ... |
28-225 |
1.74e-40 |
|
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130254 [Multi-domain] Cd Length: 363 Bit Score: 141.91 E-value: 1.74e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 28 AELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKRTEVRRRSVGFVYQFHHLLPEFSALEN 107
Cdd:TIGR01186 12 ADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQN 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 108 IVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAM 187
Cdd:TIGR01186 92 TSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDE 171
|
170 180 190
....*....|....*....|....*....|....*....
gi 1840515274 188 LTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVE 225
Cdd:TIGR01186 172 LKKLQATLQKTIVFITHDLDEAIRIgDRIVIMKAGEIVQ 210
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
2-225 |
1.78e-40 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 145.29 E-value: 1.78e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 2 SEPMLELSGIvrTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLErPTAGTVRIAGTDVSALDDgk 80
Cdd:COG4987 330 GGPSLELEDV--SFRYPGAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLAlLLRFLD-PQSGSITLGGVDLRDLDE-- 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 81 rtEVRRRSVGFVYQFHHLlpeFSA--LENIVLpqmingvAKRTARERAL-ELLRMVGLEP-----------RAGHRPARL 146
Cdd:COG4987 405 --DDLRRRIAVVPQRPHL---FDTtlRENLRL-------ARPDATDEELwAALERVGLGDwlaalpdgldtWLGEGGRRL 472
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1840515274 147 SGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVgaLIATHNLELANRMDRVFEMSDGLLVE 225
Cdd:COG4987 473 SGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGRTV--LLITHRLAGLERMDRILVLEDGRIVE 549
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
6-224 |
1.98e-40 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 137.89 E-value: 1.98e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFEQagteLQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSalddgKRTEVR 85
Cdd:cd03265 1 IEVENLVKKYGD----FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVV-----REPREV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 86 RRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPG 165
Cdd:cd03265 72 RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPE 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 166 LLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLV 224
Cdd:cd03265 152 VLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLcDRVAIIDHGRII 211
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
24-225 |
2.56e-40 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 137.85 E-value: 2.56e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLErPTAGTVRIAGTDVSALDDGKRtevrrrSVGFVYQFHHLLPEF 102
Cdd:cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLEtIAGFIK-PDSGKILLNGKDITNLPPEKR------DISYVPQNYALFPHM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 103 SALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAE 182
Cdd:cd03299 87 TVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKE 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1840515274 183 GVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVE 225
Cdd:cd03299 167 KLREELKKIRKEFGVTVLHVTHDFEEAWALaDKVAIMLNGKLIQ 210
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
4-220 |
4.37e-40 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 136.45 E-value: 4.37e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 4 PMLELSGIVRTFEqagtELQVLRGAELTVHAGELVALVGPSGAGKSTLLHI-AGLLeRPTAGTVRIAGTDVSALDDGkrt 82
Cdd:COG4133 1 MMLEAENLSCRRG----ERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRIlAGLL-PPSAGEVLWNGEPIRDARED--- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 83 evRRRSVGFVYQFHHLLPEFSALENIVLPQMINGVakRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALAN 162
Cdd:COG4133 73 --YRRRLAYLGHADGLKPELTVRENLRFWAALYGL--RADREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLS 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 163 GPGLLIADEPTGNLDphtAEGVfAMLTTIVRQ--ARVGALIATHNLELANRMDRVFEMSD 220
Cdd:COG4133 149 PAPLWLLDEPFTALD---AAGV-ALLAELIAAhlARGGAVLLTTHQPLELAAARVLDLGD 204
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
1-177 |
5.71e-40 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 139.48 E-value: 5.71e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIVRTFEQAGTELQ----VLR---GAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDV 73
Cdd:COG4608 3 MAEPLLEVRDLKKHFPVRGGLFGrtvgVVKavdGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 74 SALDDGKRTEVRRRsVGFVYQ--FHHLLPEFSALENIVLPQMINGVAKRTAR-ERALELLRMVGLEPRAGHR-PARLSGG 149
Cdd:COG4608 83 TGLSGRELRPLRRR-MQMVFQdpYASLNPRMTVGDIIAEPLRIHGLASKAERrERVAELLELVGLRPEHADRyPHEFSGG 161
|
170 180
....*....|....*....|....*...
gi 1840515274 150 EQQRVAIARALANGPGLLIADEPTGNLD 177
Cdd:COG4608 162 QRQRIGIARALALNPKLIVCDEPVSALD 189
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
22-229 |
5.91e-40 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 137.90 E-value: 5.91e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 22 LQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALdDGKRTEVRRRSVGFVYQ--FHHLL 99
Cdd:PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKL-NRAQRKAFRRDIQMVFQdsISAVN 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 100 PEFSALENIVLP-QMINGVAKRTARERALELLRMVGLEPR-AGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLD 177
Cdd:PRK10419 104 PRKTVREIIREPlRHLLSLDKAERLARASEMLRAVDLDDSvLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1840515274 178 PHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVEHARV 229
Cdd:PRK10419 184 LVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFcQRVMVMDNGQIVETQPV 236
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
6-223 |
6.50e-40 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 134.83 E-value: 6.50e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFeqagTELQVLRGAELTVHAGELVALVGPSGAGKSTLL-HIAGLLeRPTAGTVRIAGTDVSAlddgKRTEV 84
Cdd:cd03230 1 IEVRNLSKRY----GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIkIILGLL-KPDSGEIKVLGKDIKK----EPEEV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 RRRsVGFVYQFHHLLPEFSALENIvlpqmingvakrtareralellrmvglepraghrpaRLSGGEQQRVAIARALANGP 164
Cdd:cd03230 72 KRR-IGYLPEEPSLYENLTVRENL------------------------------------KLSGGMKQRLALAQALLHDP 114
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 165 GLLIADEPTGNLDPHTAEGVFAMLTTIVRQaRVGALIATHNLELANRM-DRVFEMSDGLL 223
Cdd:cd03230 115 ELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLcDRVAILNNGRI 173
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
35-224 |
1.21e-39 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 135.50 E-value: 1.21e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 35 GELVALVGPSGAGKSTLLH-IAGLlERPTAGTVRIAGTdvsALDDGKR---TEVRRRSVGFVYQFHHLLPEFSALENIV- 109
Cdd:cd03297 23 EEVTGIFGASGAGKSTLLRcIAGL-EKPDGGTIVLNGT---VLFDSRKkinLPPQQRKIGLVFQQYALFPHLNVRENLAf 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 110 -LPQMINGVAkrtaRERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAML 188
Cdd:cd03297 99 gLKRKRNRED----RISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPEL 174
|
170 180 190
....*....|....*....|....*....|....*..
gi 1840515274 189 TTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLV 224
Cdd:cd03297 175 KQIKKNLNIPVIFVTHDLSEAEYLaDRIVVMEDGRLQ 211
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
24-218 |
1.28e-39 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 135.35 E-value: 1.28e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIagtdvsaldDGKRTEVRRRSVGFVYQFHHLLPEF 102
Cdd:cd03235 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKaILGLL-KPTSGSIRV---------FGKPLEKERKRIGYVPQRRSIDRDF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 103 --SALEnIVL----PQM-INGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGN 175
Cdd:cd03235 84 piSVRD-VVLmglyGHKgLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1840515274 176 LDPHTAEGVFAMLTTiVRQARVGALIATHNLELANR-MDRVFEM 218
Cdd:cd03235 163 VDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVLEyFDRVLLL 205
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
6-226 |
1.38e-39 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 144.21 E-value: 1.38e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIvrTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLErPTAGTVRIAGTDVSALDdgkrTEV 84
Cdd:COG2274 474 IELENV--SFRYPGDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKlLLGLYE-PTSGRILIDGIDLRQID----PAS 546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 RRRSVGFVYQFHHLlpeFSA--LENIVLpqmingVAKRTARERALELLRMVGLEPRAGHRP-----------ARLSGGEQ 151
Cdd:COG2274 547 LRRQIGVVLQDVFL---FSGtiRENITL------GDPDATDEEIIEAARLAGLHDFIEALPmgydtvvgeggSNLSGGQR 617
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1840515274 152 QRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVgaLIATHNLELANRMDRVFEMSDGLLVEH 226
Cdd:COG2274 618 QRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLLKGRTV--IIIAHRLSTIRLADRIIVLDKGRIVED 690
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1-221 |
8.26e-39 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 137.77 E-value: 8.26e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIVRTFEqaGTElqVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLlERPTAGTVRIAGTDVSALDdg 79
Cdd:PRK09452 10 SLSPLVELRGISKSFD--GKE--VISNLDLTINNGEFLTLLGPSGCGKTTVLRlIAGF-ETPDSGRIMLDGQDITHVP-- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 80 krteVRRRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARA 159
Cdd:PRK09452 83 ----AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARA 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1840515274 160 LANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDG 221
Cdd:PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMsDRIVVMRDG 221
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
23-224 |
1.14e-38 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 132.17 E-value: 1.14e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTDVSALddgKRTEVRRRsVGFVyqfhhllpe 101
Cdd:cd03214 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKtLAGLL-KPSSGEILLDGKDLASL---SPKELARK-IAYV--------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 102 fsalenivlPQmingvakrtarerALELLRMVGLEpragHRP-ARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHT 180
Cdd:cd03214 79 ---------PQ-------------ALELLGLAHLA----DRPfNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAH 132
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1840515274 181 AEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLV 224
Cdd:cd03214 133 QIELLELLRRLARERGKTVVMVLHDLNLAARYaDRVILLKDGRIV 177
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
5-225 |
1.29e-38 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 134.55 E-value: 1.29e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFEQAG-----TELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDG 79
Cdd:TIGR02769 2 LLEVRDVTHTYRTGGlfgakQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 80 KRTEVRRrSVGFVYQ--FHHLLPEFSALENIVLP-QMINGVAKRTARERALELLRMVGLEPR-AGHRPARLSGGEQQRVA 155
Cdd:TIGR02769 82 QRRAFRR-DVQLVFQdsPSAVNPRMTVRQIIGEPlRHLTSLDESEQKARIAELLDMVGLRSEdADKLPRQLSGGQLQRIN 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1840515274 156 IARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVE 225
Cdd:TIGR02769 161 IARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFcQRVAVMDKGQIVE 231
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
1-221 |
2.69e-38 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 135.98 E-value: 2.69e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSepmLELSGIVRTFEQAgtelQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSalddgk 80
Cdd:PRK10851 1 MS---IEIANIKKSFGRT----QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS------ 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 81 RTEVRRRSVGFVYQFHHLLPEFSALENI-----VLP--QMINGVAkrtARERALELLRMVGLEPRAGHRPARLSGGEQQR 153
Cdd:PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIafgltVLPrrERPNAAA---IKAKVTQLLEMVQLAHLADRYPAQLSGGQKQR 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1840515274 154 VAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDG 221
Cdd:PRK10851 145 VALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVaDRVVVMSQG 213
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
14-221 |
5.04e-38 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 132.94 E-value: 5.04e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 14 TFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTL-LHIAGLLErPTAGTVRIAGTDVsaLDDGKRTEVRRRsVGFV 92
Cdd:TIGR04520 7 SFSYPESEKPALKNVSLSIEKGEFVAIIGHNGSGKSTLaKLLNGLLL-PTSGKVTVDGLDT--LDEENLWEIRKK-VGMV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 93 YQ----------------FhhllpefsALENIVLPQ--MingvakrtaRERALELLRMVGLEPRAGHRPARLSGGEQQRV 154
Cdd:TIGR04520 83 FQnpdnqfvgatveddvaF--------GLENLGVPReeM---------RKRVDEALKLVGMEDFRDREPHLLSGGQKQRV 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1840515274 155 AIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRMDRVFEMSDG 221
Cdd:TIGR04520 146 AIAGVLAMRPDIIILDEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMEEAVLADRVIVMNKG 212
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
40-225 |
1.15e-37 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 133.77 E-value: 1.15e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 40 LVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVsalddgkrTEV--RRRSVGFVYQFHHLLPEFSALENIVLPQMINGV 117
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV--------TNVppHLRHINMVFQSYALFPHMTVEENVAFGLKMRKV 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 118 AKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARV 197
Cdd:TIGR01187 73 PRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGI 152
|
170 180
....*....|....*....|....*....
gi 1840515274 198 GALIATHNLELANRM-DRVFEMSDGLLVE 225
Cdd:TIGR01187 153 TFVFVTHDQEEAMTMsDRIAIMRKGKIAQ 181
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-225 |
1.22e-37 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 132.45 E-value: 1.22e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIVRTFEQAgtELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTdvsALDDG 79
Cdd:PRK13635 1 MKEEIIRVEHISFRYPDA--ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKlLNGLL-LPEAGTITVGGM---VLSEE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 80 KRTEVRRRsVGFVYQ----------------FhhllpefsALENivlpqmiNGVAKRTARERALELLRMVGLEPRAGHRP 143
Cdd:PRK13635 75 TVWDVRRQ-VGMVFQnpdnqfvgatvqddvaF--------GLEN-------IGVPREEMVERVDQALRQVGMEDFLNREP 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 144 ARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRMDRVFEMSDGLL 223
Cdd:PRK13635 139 HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEI 218
|
..
gi 1840515274 224 VE 225
Cdd:PRK13635 219 LE 220
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
21-226 |
1.80e-37 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 130.25 E-value: 1.80e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 21 ELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTDVSALDDGKRTevrRRSVGFVYQFHHLL 99
Cdd:cd03224 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKtIMGLL-PPRSGSIRFDGRDITGLPPHERA---RAGIGYVPEGRRIF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 100 PEFSALENIVLPQMINGVAKRTAR-ERALELLRMvgLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDP 178
Cdd:cd03224 88 PELTVEENLLLGAYARRRAKRKARlERVYELFPR--LKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAP 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1840515274 179 HTAEGVFAMLTTIvRQARVGALIATHNLELANRM-DRVFEMSDGLLVEH 226
Cdd:cd03224 166 KIVEEIFEAIREL-RDEGVTILLVEQNARFALEIaDRAYVLERGRVVLE 213
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
3-221 |
4.72e-37 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 129.72 E-value: 4.72e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 3 EPMLELSGIvrtfeQAG-TELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTDVSALddgk 80
Cdd:COG0410 1 MPMLEVENL-----HAGyGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKaISGLL-PPRSGSIRFDGEDITGL---- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 81 RTEVR-RRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTAR--ERALELL-RmvgLEPRAGHRPARLSGGEQQRVAI 156
Cdd:COG0410 71 PPHRIaRLGIGYVPEGRRIFPSLTVEENLLLGAYARRDRAEVRAdlERVYELFpR---LKERRRQRAGTLSGGEQQMLAI 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 157 ARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIvRQARVGALIATHNLELANRM-DRVFEMSDG 221
Cdd:COG0410 148 GRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRL-NREGVTILLVEQNARFALEIaDRAYVLERG 212
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
23-221 |
1.15e-36 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 126.21 E-value: 1.15e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKRtevrRRSVGFVYQfhhllpef 102
Cdd:cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEEL----RRRIGYVPQ-------- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 103 salenivlpqmingvakrtareralellrmvglepraghrparLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAE 182
Cdd:cd00267 81 -------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRE 117
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1840515274 183 GVFAMLTTIVRQARvGALIATHNLELANR-MDRVFEMSDG 221
Cdd:cd00267 118 RLLELLRELAEEGR-TVIIVTHDPELAELaADRVIVLKDG 156
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
17-226 |
3.96e-36 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 128.60 E-value: 3.96e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 17 QAGT--ELQVLRGAELTVHAGELVALVGPSGAGKSTLL-HIAGLLeRPTAGTVRIAGTDVSALDDGKRTEVRRRSVGFVY 93
Cdd:PRK13634 13 QYKTpfERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLqHLNGLL-QPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVF 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 94 QF-HHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHR-PARLSGGEQQRVAIARALANGPGLLIADE 171
Cdd:PRK13634 92 QFpEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARsPFELSGGQMRRVAIAGVLAMEPEVLVLDE 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 172 PTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLE-LANRMDRVFEMSDGLLVEH 226
Cdd:PRK13634 172 PTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEdAARYADQIVVMHKGTVFLQ 227
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
4-218 |
5.53e-36 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 132.80 E-value: 5.53e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 4 PMLELSGIVRTFEQAGtelQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLErPTAGTVRIAGTDVSALDdgkrT 82
Cdd:TIGR02857 320 SSLEFSGVSVAYPGRR---PALRPVSFTVPPGERVALVGPSGAGKSTLLNlLLGFVD-PTEGSIAVNGVPLADAD----A 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 83 EVRRRSVGFVYQfHHLLPEFSALENIVL------PQMINGVAKRTARERALELLRMvGLEPRAGHRPARLSGGEQQRVAI 156
Cdd:TIGR02857 392 DSWRDQIAWVPQ-HPFLFAGTIAENIRLarpdasDAEIREALERAGLDEFVAALPQ-GLDTPIGEGGAGLSGGQAQRLAL 469
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1840515274 157 ARALANGPGLLIADEPTGNLDPHTAegvfAMLTTIVRQARVGA--LIATHNLELANRMDRVFEM 218
Cdd:TIGR02857 470 ARAFLRDAPLLLLDEPTAHLDAETE----AEVLEALRALAQGRtvLLVTHRLALAALADRIVVL 529
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
21-209 |
7.16e-36 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 127.39 E-value: 7.16e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 21 ELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDG---------KRTEVRRRSVGF 91
Cdd:PRK10619 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKdgqlkvadkNQLRLLRTRLTM 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 92 VYQFHHLLPEFSALENIV-LPQMINGVAKRTARERALELLRMVGLEPRA-GHRPARLSGGEQQRVAIARALANGPGLLIA 169
Cdd:PRK10619 97 VFQHFNLWSHMTVLENVMeAPIQVLGLSKQEARERAVKYLAKVGIDERAqGKYPVHLSGGQQQRVSIARALAMEPEVLLF 176
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1840515274 170 DEPTGNLDPHTAEGVFAMLTTIVRQARVgALIATHNLELA 209
Cdd:PRK10619 177 DEPTSALDPELVGEVLRIMQQLAEEGKT-MVVVTHEMGFA 215
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
5-229 |
9.10e-36 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 126.02 E-value: 9.10e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIvrTFEQAGTELQvlrgAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTDVSALDDGKrte 83
Cdd:COG3840 1 MLRLDDL--TYRYGDFPLR----FDLTIAAGERVAILGPSGAGKSTLLNlIAGFL-PPDSGRILWNGQDLTALPPAE--- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 84 vrrRSVGFVYQFHHLLPEFSALENIVL---PQMingvaKRTARERAL--ELLRMVGLEPRAGHRPARLSGGEQQRVAIAR 158
Cdd:COG3840 71 ---RPVSMLFQENNLFPHLTVAQNIGLglrPGL-----KLTAEQRAQveQALERVGLAGLLDRLPGQLSGGQRQRVALAR 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 159 ALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVEHARV 229
Cdd:COG3840 143 CLVRKRPILLLDEPFSALDPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIaDRVLLVADGRIAADGPT 214
|
|
| tungstate_WtpC |
NF040840 |
tungstate ABC transporter ATP-binding protein WtpC; |
5-225 |
9.80e-35 |
|
tungstate ABC transporter ATP-binding protein WtpC;
Pssm-ID: 468779 [Multi-domain] Cd Length: 347 Bit Score: 126.34 E-value: 9.80e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFEqagtELQvLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLErPTAGTVRIAGTDVSALDDGKRte 83
Cdd:NF040840 1 MIRIENLSKDWK----EFK-LRDISLEVKEGEYFIILGPSGAGKTVLLElIAGIWP-PDSGKIYLDGKDITNLPPEKR-- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 84 vrrrSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANG 163
Cdd:NF040840 73 ----GIAYVYQNYMLFPHKTVFENIAFGLKLRKVPKEEIERKVKEIMELLGISHLLHRKPRTLSGGEQQRVALARALIIE 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1840515274 164 PGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVE 225
Cdd:NF040840 149 PKLLLLDEPLSALDVQTRDELIREMKRWHREFGFTAIHVTHNFEEALSLaDRVGIMLNGRLSQ 211
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
35-227 |
1.29e-34 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 124.56 E-value: 1.29e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 35 GELVALVGPSGAGKSTLL-HIAGLLeRPTAGTVRIAGTDVSALDDGKRTEVRRRSVGFVYQFhhllPEFSALENIVLPQM 113
Cdd:PRK13641 33 GSFVALVGHTGSGKSTLMqHFNALL-KPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQF----PEAQLFENTVLKDV 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 114 ----IN-GVAKRTARERALELLRMVGL-EPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPhtaEGVFAM 187
Cdd:PRK13641 108 efgpKNfGFSEDEAKEKALKWLKKVGLsEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDP---EGRKEM 184
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1840515274 188 LTTIVRQARVG--ALIATHNL-ELANRMDRVFEMSDGLLVEHA 227
Cdd:PRK13641 185 MQLFKDYQKAGhtVILVTHNMdDVAEYADDVLVLEHGKLIKHA 227
|
|
| 3a0107s01c2 |
TIGR00972 |
phosphate ABC transporter, ATP-binding protein; This model represents the ATP-binding protein ... |
21-227 |
1.31e-34 |
|
phosphate ABC transporter, ATP-binding protein; This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. [Transport and binding proteins, Anions]
Pssm-ID: 273372 [Multi-domain] Cd Length: 247 Bit Score: 123.56 E-value: 1.31e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 21 ELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGtVRIAGT----DVSALDDGKRTEVRRRSVGFVYQFH 96
Cdd:TIGR00972 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPG-VRIEGKvlfdGQDIYDKKIDVVELRRRVGMVFQKP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 97 HLLPeFSALENIVLPQMINGV-AKRTARERALELLRMVGL----EPRAGHRPARLSGGEQQRVAIARALANGPGLLIADE 171
Cdd:TIGR00972 92 NPFP-MSIYDNIAYGPRLHGIkDKKELDEIVEESLKKAALwdevKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1840515274 172 PTGNLDPHTAEGVFAMLT------TIVrqarvgalIATHNLELANRM-DRVFEMSDGLLVEHA 227
Cdd:TIGR00972 171 PTSALDPIATGKIEELIQelkkkyTIV--------IVTHNMQQAARIsDRTAFFYDGELVEYG 225
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
25-221 |
2.26e-34 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 122.57 E-value: 2.26e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 25 LRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSAldDGKRTEVrrrsvgfVYQFHHLLPEFSA 104
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITE--PGPDRMV-------VFQNYSLLPWLTV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 105 LENIVLP-QMINGVAKRTARERAL-ELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAE 182
Cdd:TIGR01184 72 RENIALAvDRVLPDLSKSERRAIVeEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1840515274 183 GVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDG 221
Cdd:TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVDEALLLsDRVVMLTNG 191
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
25-224 |
2.45e-34 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 124.42 E-value: 2.45e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 25 LRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSalddgKRTEVRRRSVGFVYQFHHLLPEFSA 104
Cdd:TIGR01188 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVV-----REPRKVRRSIGIVPQYASVDEDLTG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 105 LENIVLPQMINGVAKRTARERALELLRMVGLEpRAGHRPAR-LSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEG 183
Cdd:TIGR01188 84 RENLEMMGRLYGLPKDEAEERAEELLELFELG-EAADRPVGtYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRA 162
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1840515274 184 VFAMLTTIVrQARVGALIATHNLELANRM-DRVFEMSDGLLV 224
Cdd:TIGR01188 163 IWDYIRALK-EEGVTILLTTHYMEEADKLcDRIAIIDHGRII 203
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
28-221 |
3.53e-34 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 125.21 E-value: 3.53e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 28 AELTVHAGELVALVGPSGAGKSTLLH-IAGLlERPTAGTVRIAGTDVsaLDDGKRTEV--RRRSVGFVYQFHHLLPEFSA 104
Cdd:COG4148 18 VDFTLPGRGVTALFGPSGSGKTTLLRaIAGL-ERPDSGRIRLGGEVL--QDSARGIFLppHRRRIGYVFQEARLFPHLSV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 105 LENIvlpqmiNGVAKRTARERAL----ELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHT 180
Cdd:COG4148 95 RGNL------LYGRKRAPRAERRisfdEVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLAR 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1840515274 181 AEGVFAMLTTIVRQARVGALIATHNLE----LAnrmDRVFEMSDG 221
Cdd:COG4148 169 KAEILPYLERLRDELDIPILYVSHSLDevarLA---DHVVLLEQG 210
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
24-209 |
8.87e-34 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 121.73 E-value: 8.87e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLErPTAGTVRIAGTDVsaldDGKRTEVrrrsvGFVYQFHHLLPEF 102
Cdd:PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNlIAGFVP-YQHGSITLDGKPV----EGPGAER-----GVVFQNEGLLPWR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 103 SALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAE 182
Cdd:PRK11248 86 NVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTRE 165
|
170 180
....*....|....*....|....*..
gi 1840515274 183 GVFAMLTTIVRQARVGALIATHNLELA 209
Cdd:PRK11248 166 QMQTLLLKLWQETGKQVLLITHDIEEA 192
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
5-221 |
1.12e-33 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 122.52 E-value: 1.12e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFEqagtELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIA-GLLErPTAGTVRIAGTDVSALDdgkrte 83
Cdd:COG4152 1 MLELKGLTKRFG----DKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIIlGILA-PDSGEVLWDGEPLDPED------ 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 84 vrRRSVGFvyqfhhlLPE-------FSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAI 156
Cdd:COG4152 70 --RRRIGY-------LPEerglypkMKVGEQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQL 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1840515274 157 ARALANGPGLLIADEPTGNLDPHTAEgvfAMLTTIVRQARVGALI--ATHNLELANRM-DRVFEMSDG 221
Cdd:COG4152 141 IAALLHDPELLILDEPFSGLDPVNVE---LLKDVIRELAAKGTTVifSSHQMELVEELcDRIVIINKG 205
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
23-225 |
1.61e-33 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 126.43 E-value: 1.61e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLErPTAGTVRIAGTDVSALDdgkrTEVRRRSVGFVYQFHHLLpE 101
Cdd:COG1132 354 PVLKDISLTIPPGETVALVGPSGSGKSTLVNlLLRFYD-PTSGRILIDGVDIRDLT----LESLRRQIGVVPQDTFLF-S 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 102 FSALENIVLpqmingvAKRTA-RERALELLRMV-----------GLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIA 169
Cdd:COG1132 428 GTIRENIRY-------GRPDAtDEEVEEAAKAAqahefiealpdGYDTVVGERGVNLSGGQRQRIAIARALLKDPPILIL 500
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 170 DEPTGNLDPHTAEGVFAMLTTIVRQARVgaLIATHNLELANRMDRVFEMSDGLLVE 225
Cdd:COG1132 501 DEATSALDTETEALIQEALERLMKGRTT--IVIAHRLSTIRNADRILVLDDGRIVE 554
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
6-224 |
4.10e-33 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 121.35 E-value: 4.10e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFEQ-AGTELQVLRGAELTVHAGELVALVGPSGAGKSTLL-HIAGLLeRPTAGTVRI----------AGTDV 73
Cdd:PRK13651 3 IKVKNIVKIFNKkLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIeHLNALL-LPDTGTIEWifkdeknkkkTKEKE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 74 SALDDG--KRTEVR--------RRSVGFVYQF-HHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHR 142
Cdd:PRK13651 82 KVLEKLviQKTRFKkikkikeiRRRVGVVFQFaEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 143 -PARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVgALIATHNLELA-NRMDRVFEMSD 220
Cdd:PRK13651 162 sPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKT-IILVTHDLDNVlEWTKRTIFFKD 240
|
....
gi 1840515274 221 GLLV 224
Cdd:PRK13651 241 GKII 244
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
25-220 |
1.20e-32 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 117.58 E-value: 1.20e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 25 LRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLERP--TAGTVRIAGTDVSALDdgkrteVRRRSVGFVYQFHHLLPE 101
Cdd:COG4136 17 LAPLSLTVAPGEILTLMGPSGSGKSTLLAaIAGTLSPAfsASGEVLLNGRRLTALP------AEQRRIGILFQDDLLFPH 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 102 FSALENIV--LPqmiNGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPH 179
Cdd:COG4136 91 LSVGENLAfaLP---PTIGRAQRRARVEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAEPRALLLDEPFSKLDAA 167
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1840515274 180 TAEGVFAMLTTIVRQARVGALIATHNLELANRMDRVFEMSD 220
Cdd:COG4136 168 LRAQFREFVFEQIRQRGIPALLVTHDEEDAPAAGRVLDLGN 208
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
7-221 |
1.20e-32 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 117.36 E-value: 1.20e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 7 ELSGIVRTFEQAGTelqVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDdgkrtevRR 86
Cdd:cd03226 1 RIENISFSYKKGTE---ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKE-------RR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 87 RSVGFVYQ--FHHLLPEFSALEniVLPQMINGVAKRTARERALELLRMVGLEPRagHrPARLSGGEQQRVAIARALANGP 164
Cdd:cd03226 71 KSIGYVMQdvDYQLFTDSVREE--LLLGLKELDAGNEQAETVLKDLDLYALKER--H-PLSLSGGQKQRLAIAAALLSGK 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1840515274 165 GLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVgALIATHNLELANRM-DRVFEMSDG 221
Cdd:cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKA-VIVITHDYEFLAKVcDRVLLLANG 202
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
4-224 |
1.62e-32 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 118.34 E-value: 1.62e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 4 PMLELSGIVRTFEQAgtelQVLRGAELTVHAGELVALVGPSGAGKSTLL-HIAGLLeRPTAGTVRIAGTDVSALDDGKRT 82
Cdd:PRK13548 1 AMLEARNLSVRLGGR----TLLDDVSLTLRPGEVVAILGPNGAGKSTLLrALSGEL-SPDSGEVRLNGRPLADWSPAELA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 83 evRRRSVgfVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALA- 161
Cdd:PRK13548 76 --RRRAV--LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAq 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1840515274 162 -----NGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLV 224
Cdd:PRK13548 152 lwepdGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYaDRIVLLHQGRLV 220
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
15-225 |
2.62e-32 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 120.91 E-value: 2.62e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 15 FEQAGTELQVlRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKRTEVRRRSVGFVYQ 94
Cdd:PRK10070 35 LEKTGLSLGV-KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQ 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 95 FHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTG 174
Cdd:PRK10070 114 SFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFS 193
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 175 NLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVE 225
Cdd:PRK10070 194 ALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIgDRIAIMQNGEVVQ 245
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
23-225 |
5.32e-32 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 115.78 E-value: 5.32e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVsalddGKRTEVRRRsVGFVYQFHHLLPEF 102
Cdd:cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSY-----QKNIEALRR-IGALIEAPGFYPNL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 103 SALENIVLPQMINGVAKrtarERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPhtaE 182
Cdd:cd03268 88 TARENLRLLARLLGIRK----KRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP---D 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1840515274 183 GVFAMLTTIVRQARVGA--LIATHNL-ELANRMDRVFEMSDGLLVE 225
Cdd:cd03268 161 GIKELRELILSLRDQGItvLISSHLLsEIQKVADRIGIINKGKLIE 206
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
3-221 |
5.46e-32 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 116.72 E-value: 5.46e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 3 EPMLELSGIVRTFEQAgtelQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAG-TVRI-----AGTDVSAL 76
Cdd:COG1119 1 DPLLELRNVTVRRGGK----TILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLfgerrGGEDVWEL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 77 ddgkrtevrRRSVGFVYQ-FHHLLPEFSALENIVL--------------PQMingvakrtaRERALELLRMVGLEPRAGH 141
Cdd:COG1119 77 ---------RKRIGLVSPaLQLRFPRDETVLDVVLsgffdsiglyreptDEQ---------RERARELLELLGLAHLADR 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 142 RPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLE-LANRMDRVFEMSD 220
Cdd:COG1119 139 PFGTLSQGEQRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEeIPPGITHVLLLKD 218
|
.
gi 1840515274 221 G 221
Cdd:COG1119 219 G 219
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-229 |
1.07e-31 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 120.52 E-value: 1.07e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIVRTFeqaGTeLQVLRGAELTVHAGELVALVGPSGAGKSTLLHI-AGLLeRPTAGTVRIAGTDVS----- 74
Cdd:COG3845 1 MMPPALELRGITKRF---GG-VVANDDVSLTVRPGEIHALLGENGAGKSTLMKIlYGLY-QPDSGEILIDGKPVRirspr 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 75 -ALDDGkrtevrrrsVGFVYQfhH--LLPEFSALENIVL---PQMINGVAKRTARERALELLRMVGLE--PRAghRPARL 146
Cdd:COG3845 76 dAIALG---------IGMVHQ--HfmLVPNLTVAENIVLglePTKGGRLDRKAARARIRELSERYGLDvdPDA--KVEDL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 147 SGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARvGALIATHNL----ELAnrmDRVFEMSDGL 222
Cdd:COG3845 143 SVGEQQRVEILKALYRGARILILDEPTAVLTPQEADELFEILRRLAAEGK-SIIFITHKLrevmAIA---DRVTVLRRGK 218
|
....*..
gi 1840515274 223 LVEHARV 229
Cdd:COG3845 219 VVGTVDT 225
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
6-224 |
1.45e-31 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 113.29 E-value: 1.45e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFEQagteLQVLRGAELTVHAGELVALVGPSGAGKSTLLHI-AGLLErPTAGTVRIAGTDVSALDdgkRTEV 84
Cdd:cd03216 1 LELRGITKRFGG----VKALDGVSLSVRRGEVHALLGENGAGKSTLMKIlSGLYK-PDSGEILVDGKEVSFAS---PRDA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 RRRSVGFVYQfhhllpefsalenivlpqmingvakrtareralellrmvglepraghrparLSGGEQQRVAIARALANGP 164
Cdd:cd03216 73 RRAGIAMVYQ---------------------------------------------------LSVGERQMVEIARALARNA 101
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1840515274 165 GLLIADEPTGNLDPHTAEGVFAMLTTIvRQARVGALIATHNL-ELANRMDRVFEMSDGLLV 224
Cdd:cd03216 102 RLLILDEPTAALTPAEVERLFKVIRRL-RAQGVAVIFISHRLdEVFEIADRVTVLRDGRVV 161
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
6-221 |
2.56e-31 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 115.16 E-value: 2.56e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFeqagTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKRtevr 85
Cdd:PRK11247 13 LLLNAVSKRY----GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTR---- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 86 rrsvgFVYQFHHLLPEFSALENIVLpqminGVaKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPG 165
Cdd:PRK11247 85 -----LMFQDARLLPWKKVIDNVGL-----GL-KGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPG 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1840515274 166 LLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDG 221
Cdd:PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMaDRVLLIEEG 210
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
23-227 |
2.61e-31 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 115.13 E-value: 2.61e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTLL--------HIAGLleRpTAGTVRIAGTDVSAlDDGKRTEVRRRsVGFVYQ 94
Cdd:COG1117 25 QALKDINLDIPENKVTALIGPSGCGKSTLLrclnrmndLIPGA--R-VEGEILLDGEDIYD-PDVDVVELRRR-VGMVFQ 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 95 FHHLLPeFSALENIVLPQMINGVA-KRTARERALELLRMVGL----EPRAGHRPARLSGGEQQRVAIARALANGPGLLIA 169
Cdd:COG1117 100 KPNPFP-KSIYDNVAYGLRLHGIKsKSELDEIVEESLRKAALwdevKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLM 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1840515274 170 DEPTGNLDPHTAEGVFAMLT------TIVrqarvgalIATHNLELANRM-DRVFEMSDGLLVEHA 227
Cdd:COG1117 179 DEPTSALDPISTAKIEELILelkkdyTIV--------IVTHNMQQAARVsDYTAFFYLGELVEFG 235
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
5-224 |
3.03e-31 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 115.21 E-value: 3.03e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIvrTFEQAGTelQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTDVSALDDGKRTe 83
Cdd:COG4559 1 MLEAENL--SVRLGGR--TLLDDVSLTLRPGELTAIIGPNGAGKSTLLKlLTGEL-TPSSGEVRLNGRPLAAWSPWELA- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 84 vRRRSVgfVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALA-- 161
Cdd:COG4559 75 -RRRAV--LPQHSSLAFPFTVEEVVALGRAPHGSSAAQDRQIVREALALVGLAHLAGRSYQTLSGGEQQRVQLARVLAql 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 162 -----NGPGLLIADEPTGNLDPHTAEGVFamltTIVRQ---ARVGALIATHNLELANRM-DRVFEMSDGLLV 224
Cdd:COG4559 152 wepvdGGPRWLFLDEPTSALDLAHQHAVL----RLARQlarRGGGVVAVLHDLNLAAQYaDRILLLHQGRLV 219
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
4-225 |
3.21e-31 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 117.63 E-value: 3.21e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 4 PMLELSGIVRTFE-QAGTElqvlrGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSalddgkRT 82
Cdd:PRK11607 18 PLLEIRNLTKSFDgQHAVD-----DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS------HV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 83 EVRRRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALAN 162
Cdd:PRK11607 87 PPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1840515274 163 GPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVE 225
Cdd:PRK11607 167 RPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMaGRIAIMNRGKFVQ 230
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
23-226 |
4.39e-31 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 114.18 E-value: 4.39e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKRtevRRRSVGFVYQFHHLLPEF 102
Cdd:cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR---ARLGIGYLPQEASIFRKL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 103 SALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAE 182
Cdd:cd03218 91 TVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQ 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1840515274 183 GVFAMlTTIVRQARVGALIATHNL-ELANRMDRVFEMSDGLLVEH 226
Cdd:cd03218 171 DIQKI-IKILKDRGIGVLITDHNVrETLSITDRAYIIYEGKVLAE 214
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
5-224 |
5.34e-31 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 114.79 E-value: 5.34e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFEQaGTElqVLRGAELTVHAGELVALVGPSGAGKSTL-LHIAGLLErPTAGTVRIAGTDVSAldDGKRTE 83
Cdd:PRK13639 1 ILETRDLKYSYPD-GTE--ALKGINFKAEKGEMVALLGPNGAGKSTLfLHFNGILK-PTSGEVLIKGEPIKY--DKKSLL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 84 VRRRSVGFVYQF-HHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALAN 162
Cdd:PRK13639 75 EVRKTVGIVFQNpDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAM 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1840515274 163 GPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQArVGALIATHNLELANR-MDRVFEMSDGLLV 224
Cdd:PRK13639 155 KPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEG-ITIIISTHDVDLVPVyADKVYVMSDGKII 216
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
21-221 |
6.59e-31 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 115.14 E-value: 6.59e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 21 ELQVLRGAELTVHAGELVALVGPSGAGKSTLL-HIAGLLErPTAGTVRIAGTDVSalDDG-KRTEVRRRsVGFVYQFhhl 98
Cdd:PRK13637 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIqHLNGLLK-PTSGKIIIDGVDIT--DKKvKLSDIRKK-VGLVFQY--- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 99 lPEFSALENIVLPQM----IN-GVAKRTARERALELLRMVGL--EPRAGHRPARLSGGEQQRVAIARALANGPGLLIADE 171
Cdd:PRK13637 92 -PEYQLFEETIEKDIafgpINlGLSEEEIENRVKRAMNIVGLdyEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDE 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1840515274 172 PTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLE-LANRMDRVFEMSDG 221
Cdd:PRK13637 171 PTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEdVAKLADRIIVMNKG 221
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
6-178 |
8.43e-31 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 112.67 E-value: 8.43e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFEQagteLQVLRGAELTVHAGeLVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSAlddgKRTEVR 85
Cdd:cd03264 1 LQLENLTKRYGK----KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLK----QPQKLR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 86 RRsVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPG 165
Cdd:cd03264 72 RR-IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPS 150
|
170
....*....|...
gi 1840515274 166 LLIADEPTGNLDP 178
Cdd:cd03264 151 ILIVDEPTAGLDP 163
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
30-224 |
1.33e-30 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 112.20 E-value: 1.33e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 30 LTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDdgkrteVRRRSVGFVYQFHHLLPEFSALENIV 109
Cdd:cd03298 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAP------PADRPVSMLFQENNLFAHLTVEQNVG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 110 LPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLT 189
Cdd:cd03298 93 LGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVL 172
|
170 180 190
....*....|....*....|....*....|....*.
gi 1840515274 190 TIVRQARVGALIATHNLELANRM-DRVFEMSDGLLV 224
Cdd:cd03298 173 DLHAETKMTVLMVTHQPEDAKRLaQRVVFLDNGRIA 208
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-215 |
2.14e-30 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 114.93 E-value: 2.14e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIVRTFEQAgtelQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSAlddgk 80
Cdd:PRK13536 37 MSTVAIDLAGVSKSYGDK----AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPA----- 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 81 RTEVRRRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARAL 160
Cdd:PRK13536 108 RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARAL 187
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 161 ANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVgALIATHNLELANRM-DRV 215
Cdd:PRK13536 188 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKT-ILLTTHFMEEAERLcDRL 242
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
3-221 |
2.79e-30 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 112.80 E-value: 2.79e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 3 EPMLELSGIVRTFEQAgtelQVLRGAELTVHAGELVALVGPSGAGKSTLL-HIAGLL--ERPTAGTVRIAGTDVSAldDG 79
Cdd:PRK09984 2 QTIIRVEKLAKTFNQH----QALHAVDLNIHHGEMVALLGPSGSGKSTLLrHLSGLItgDKSAGSHIELLGRTVQR--EG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 80 KRTEVRRRS---VGFVYQFHHLLPEFSALENIVLPQMINGVAKRTA--------RERALELLRMVGLEPRAGHRPARLSG 148
Cdd:PRK09984 76 RLARDIRKSranTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCfswftreqKQRALQALTRVGMVHFAHQRVSTLSG 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1840515274 149 GEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDG 221
Cdd:PRK09984 156 GQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYcERIVALRQG 229
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
6-226 |
4.13e-30 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 114.43 E-value: 4.13e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFEQAgtelQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSalddgkRTEVR 85
Cdd:PRK11432 7 VVLKNITKRFGSN----TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVT------HRSIQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 86 RRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARER---ALELLRMVGLEPRAghrPARLSGGEQQRVAIARALAN 162
Cdd:PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRvkeALELVDLAGFEDRY---VDQISGGQQQRVALARALIL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1840515274 163 GPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELAnrmdrvFEMSDGLLVEH 226
Cdd:PRK11432 154 KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEA------FAVSDTVIVMN 211
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
6-221 |
4.56e-30 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 109.61 E-value: 4.56e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIvrTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTDVSALDDGKrtev 84
Cdd:cd03246 1 LEVENV--SFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARlILGLL-RPTSGRVRLDGADISQWDPNE---- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 RRRSVGFVYQFHHLLPEfSALENIvlpqmingvakrtareralellrmvglepraghrparLSGGEQQRVAIARALANGP 164
Cdd:cd03246 74 LGDHVGYLPQDDELFSG-SIAENI-------------------------------------LSGGQRQRLGLARALYGNP 115
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 165 GLLIADEPTGNLDPHTAegvfAMLTTIVRQARVG---ALIATHNLELANRMDRVFEMSDG 221
Cdd:cd03246 116 RILVLDEPNSHLDVEGE----RALNQAIAALKAAgatRIVIAHRPETLASADRILVLEDG 171
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
6-224 |
5.28e-30 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 110.45 E-value: 5.28e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFEQAgtelQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLErPTAGTVRIAGTDVSALDdgkrtev 84
Cdd:cd03269 1 LEVENVTKRFGRV----TALDDISFSVEKGEIFGLLGPNGAGKTTTIRmILGIIL-PDSGEVLFDGKPLDIAA------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 rRRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGP 164
Cdd:cd03269 69 -RNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDP 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1840515274 165 GLLIADEPTGNLDPHTAEgvfAMLTTIVRQARVGA--LIATHNLELANRM-DRVFEMSDGLLV 224
Cdd:cd03269 148 ELLILDEPFSGLDPVNVE---LLKDVIRELARAGKtvILSTHQMELVEELcDRVLLLNKGRAV 207
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
28-221 |
7.32e-30 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 113.67 E-value: 7.32e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 28 AELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKRTEVRRRSVGFVYQFHHLLPEFSALEN 107
Cdd:TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 108 IVLpqminGVAKRTARERAL---ELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGV 184
Cdd:TIGR02142 96 LRY-----GMKRARPSERRIsfeRVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEI 170
|
170 180 190
....*....|....*....|....*....|....*...
gi 1840515274 185 FAMLTTIVRQARVGALIATHNL-ELANRMDRVFEMSDG 221
Cdd:TIGR02142 171 LPYLERLHAEFGIPILYVSHSLqEVLRLADRVVVLEDG 208
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-212 |
1.01e-29 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 112.21 E-value: 1.01e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIVRTFeqagTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSalddgK 80
Cdd:PRK13537 3 MSVAPIDFRNVEKRY----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVP-----S 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 81 RTEVRRRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARAL 160
Cdd:PRK13537 74 RARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARAL 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 161 ANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVgALIATHNLELANRM 212
Cdd:PRK13537 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKT-ILLTTHFMEEAERL 204
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
5-224 |
2.10e-29 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 109.38 E-value: 2.10e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSAlddgKRTEV 84
Cdd:cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK----EPAEA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 RRRsVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGP 164
Cdd:cd03266 77 RRR-LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDP 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 165 GLLIADEPTGNLDphtaegVFA--MLTTIVRQARVGA---LIATHNLELANRM-DRVFEMSDGLLV 224
Cdd:cd03266 156 PVLLLDEPTTGLD------VMAtrALREFIRQLRALGkciLFSTHIMQEVERLcDRVVVLHRGRVV 215
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
17-224 |
2.37e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 110.60 E-value: 2.37e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 17 QAGT--ELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKRTEVRRRSVGFVYQ 94
Cdd:PRK13649 13 QAGTpfEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 95 FhhllPEFSALENIVL------PQMInGVAKRTARERALELLRMVGL-EPRAGHRPARLSGGEQQRVAIARALANGPGLL 167
Cdd:PRK13649 93 F----PESQLFEETVLkdvafgPQNF-GVSQEEAEALAREKLALVGIsESLFEKNPFELSGGQMRRVAIAGILAMEPKIL 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1840515274 168 IADEPTGNLDPHTAEGVFAMLTTIvRQARVGALIATHNL-ELANRMDRVFEMSDGLLV 224
Cdd:PRK13649 168 VLDEPTAGLDPKGRKELMTLFKKL-HQSGMTIVLVTHLMdDVANYADFVYVLEKGKLV 224
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
20-225 |
3.29e-29 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 109.24 E-value: 3.29e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 20 TELQVLRGAELTVHAGELVALVGPSGAGKSTLLHiagLLER---PTAGTVRIAGTDVSALDdgkrTEVRRRSVGFVYQ-- 94
Cdd:cd03253 12 PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILR---LLFRfydVSSGSILIDGQDIREVT----LDSLRRAIGVVPQdt 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 95 --FHHllpefSALENI------VLPQMINGVAKRTARERALELLRMvGLEPRAGHRPARLSGGEQQRVAIARALANGPGL 166
Cdd:cd03253 85 vlFND-----TIGYNIrygrpdATDEEVIEAAKAAQIHDKIMRFPD-GYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1840515274 167 LIADEPTGNLDPHTAEGVFAMLTTiVRQARVGALIAtHNLELANRMDRVFEMSDGLLVE 225
Cdd:cd03253 159 LLLDEATSALDTHTEREIQAALRD-VSKGRTTIVIA-HRLSTIVNADKIIVLKDGRIVE 215
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
14-226 |
3.76e-29 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 108.86 E-value: 3.76e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 14 TFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLlhiAGLLER---PTAGTVRIAGTDVSALDDGKRtevrRRSVG 90
Cdd:cd03251 7 TFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTL---VNLIPRfydVDSGRILIDGHDVRDYTLASL----RRQIG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 91 FVYQFHHLLPEfSALENIVLpqmingvAKRTA-RERALELLRMV-----------GLEPRAGHRPARLSGGEQQRVAIAR 158
Cdd:cd03251 80 LVSQDVFLFND-TVAENIAY-------GRPGAtREEVEEAARAAnahefimelpeGYDTVIGERGVKLSGGQRQRIAIAR 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1840515274 159 ALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVrQARVGALIAtHNLELANRMDRVFEMSDGLLVEH 226
Cdd:cd03251 152 ALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIA-HRLSTIENADRIVVLEDGKIVER 217
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
23-209 |
3.85e-29 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 107.89 E-value: 3.85e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTLL-HIAGLLeRPTAGTVRIAGTdvsALDDGKR--TEVRRRsVGFVYQFhhll 99
Cdd:TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLlHLNGLL-RPQSGAVLIDGE---PLDYSRKglLERRQR-VGLVFQD---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 100 PE---FSA--LENIVLPQMINGVAKRTARER---ALELLRMVGLEPRAGHRparLSGGEQQRVAIARALANGPGLLIADE 171
Cdd:TIGR01166 77 PDdqlFAAdvDQDVAFGPLNLGLSEAEVERRvreALTAVGASGLRERPTHC---LSGGEKKRVAIAGAVAMRPDVLLLDE 153
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1840515274 172 PTGNLDPhtaEGVFAMLTTI--VRQARVGALIATHNLELA 209
Cdd:TIGR01166 154 PTAGLDP---AGREQMLAILrrLRAEGMTVVISTHDVDLA 190
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
6-225 |
4.14e-29 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 113.74 E-value: 4.14e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFEqagtELQVLRGAELTVHAGELVALVGPSGAGKSTLLHI-----------------------AGLLERPT 62
Cdd:TIGR03269 1 IEVKNLTKKFD----GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVlrgmdqyeptsgriiyhvalcekCGYVERPS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 63 ---------AGTVRIAGTDVSALDDGKRTEVRRRSVGFVYQFHHLLPEFSALENIV--LPQMinGVAKRTARERALELLR 131
Cdd:TIGR03269 77 kvgepcpvcGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLeaLEEI--GYEGKEAVGRAVDLIE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 132 MVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLE-LAN 210
Cdd:TIGR03269 155 MVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEvIED 234
|
250
....*....|....*
gi 1840515274 211 RMDRVFEMSDGLLVE 225
Cdd:TIGR03269 235 LSDKAIWLENGEIKE 249
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
6-224 |
4.30e-29 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 108.45 E-value: 4.30e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIvrTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTDVSALDdgkrTEV 84
Cdd:cd03245 3 IEFRNV--SFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKlLAGLY-KPTSGSVLLDGTDIRQLD----PAD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 RRRSVGFVYQFHHLLpeFSAL-ENIVLPqmiNGVAKRTARERALELLRMV--------GLEPRAGHRPARLSGGEQQRVA 155
Cdd:cd03245 76 LRRNIGYVPQDVTLF--YGTLrDNITLG---APLADDERILRAAELAGVTdfvnkhpnGLDLQIGERGRGLSGGQRQAVA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1840515274 156 IARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVgaLIATHNLELANRMDRVFEMSDGLLV 224
Cdd:cd03245 151 LARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTL--IIITHRPSLLDLVDRIIVMDSGRIV 217
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
3-226 |
5.56e-29 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 113.24 E-value: 5.56e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 3 EPMLELSGIVRTFEQAG-------TELQVLRGAELTVHAGELVALVGPSGAGKSTL-LHIAGLLerPTAGTVRIAGTDVS 74
Cdd:COG4172 273 PPLLEARDLKVWFPIKRglfrrtvGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLgLALLRLI--PSEGEIRFDGQDLD 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 75 ALDDGKRTEVRRRsVGFVYQ--FHHLLPEFSALENIVLPQMINGVA--KRTARERALELLRMVGLEPRAGHR-PARLSGG 149
Cdd:COG4172 351 GLSRRALRPLRRR-MQVVFQdpFGSLSPRMTVGQIIAEGLRVHGPGlsAAERRARVAEALEEVGLDPAARHRyPHEFSGG 429
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1840515274 150 EQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVEH 226
Cdd:COG4172 430 QRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREHGLAYLFISHDLAVVRALaHRVMVMKDGKVVEQ 507
|
|
| PQQ_ABC_ATP |
TIGR03864 |
ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system; Members of ... |
23-224 |
8.27e-29 |
|
ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system; Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 274822 [Multi-domain] Cd Length: 236 Bit Score: 108.15 E-value: 8.27e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVsalddgkRTEVRR--RSVGFVYQFHHLLP 100
Cdd:TIGR03864 15 RALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQSGQISVAGHDL-------RRAPRAalARLGVVFQQPTLDL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 101 EFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHT 180
Cdd:TIGR03864 88 DLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPAS 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1840515274 181 AEGVFAMLTTIVRQARVGALIATHNLELANRMDRVFEMSDGLLV 224
Cdd:TIGR03864 168 RAAITAHVRALARDQGLSVLWATHLVDEIEASDRLVVLHRGRVL 211
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
5-177 |
1.12e-28 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 110.32 E-value: 1.12e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFEqAGTelQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGlLERPTAGTVRIAGTDVSALddgkrtE 83
Cdd:PRK11650 3 GLKLQAVRKSYD-GKT--QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRmVAG-LERITSGEIWIGGRVVNEL------E 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 84 VRRRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANG 163
Cdd:PRK11650 73 PADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVRE 152
|
170
....*....|....
gi 1840515274 164 PGLLIADEPTGNLD 177
Cdd:PRK11650 153 PAVFLFDEPLSNLD 166
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
6-224 |
1.37e-28 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 107.36 E-value: 1.37e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLERP--TAGTVRIAGTDVsalddgKRT 82
Cdd:cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDaISGRVEGGgtTSGQILFNGQPR------KPD 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 83 EVRRRsVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARER----ALELLRMVGLEPRAGHRPARLSGGEQQRVAIAR 158
Cdd:cd03234 78 QFQKC-VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRkkrvEDVLLRDLALTRIGGNLVKGISGGERRRVSIAV 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1840515274 159 ALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARvGALIATHN--LELANRMDRVFEMSDGLLV 224
Cdd:cd03234 157 QLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNR-IVILTIHQprSDLFRLFDRILLLSSGEIV 223
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
5-221 |
1.45e-28 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 108.25 E-value: 1.45e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFEqAGT--ELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTDVSALDDGKR 81
Cdd:COG1101 1 MLELKNLSKTFN-PGTvnEKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNaIAGSL-PPDSGSILIDGKDVTKLPEYKR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 82 TevrrRSVGFVYQfHHLL---PEFSALENIVLpqmingvAKR-----------TARERA-----LELLRMvGLEPRAGHR 142
Cdd:COG1101 79 A----KYIGRVFQ-DPMMgtaPSMTIEENLAL-------AYRrgkrrglrrglTKKRRElfrelLATLGL-GLENRLDTK 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 143 PARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDG 221
Cdd:COG1101 146 VGLLSGGQRQALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNMEQALDYgNRLIMMHEG 225
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
21-226 |
1.50e-28 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 107.63 E-value: 1.50e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 21 ELQVLRGAELTVHAGELVALVGPSGAGKSTllhIAGLLER---PTAGTVRIAGTDVSALDdgkrTEVRRRSVGFVYQFHH 97
Cdd:cd03249 15 DVPILKGLSLTIPPGKTVALVGSSGCGKST---VVSLLERfydPTSGEILLDGVDIRDLN----LRWLRSQIGLVSQEPV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 98 LLpEFSALENIVLpqminGVAKRTARE-----RALELLRMV-----GLEPRAGHRPARLSGGEQQRVAIARALANGPGLL 167
Cdd:cd03249 88 LF-DGTIAENIRY-----GKPDATDEEveeaaKKANIHDFImslpdGYDTLVGERGSQLSGGQKQRIAIARALLRNPKIL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1840515274 168 IADEPTGNLDPHTAEGVFAMLTtivrQARVG--ALIATHNLELANRMDRVFEMSDGLLVEH 226
Cdd:cd03249 162 LLDEATSALDAESEKLVQEALD----RAMKGrtTIVIAHRLSTIRNADLIAVLQNGQVVEQ 218
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1-228 |
1.66e-28 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 112.11 E-value: 1.66e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKS-TLLHIAGLLERP----TAGTVRIAGTDVSA 75
Cdd:PRK15134 1 MTQPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLLPSPpvvyPSGDIRFHGESLLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 76 LDDGKRTEVRRRSVGFVYQfhHLLPEFSALENI------VLpQMINGVAKRTARERALELLRMVGLE---PRAGHRPARL 146
Cdd:PRK15134 81 ASEQTLRGVRGNKIAMIFQ--EPMVSLNPLHTLekqlyeVL-SLHRGMRREAARGEILNCLDRVGIRqaaKRLTDYPHQL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 147 SGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVE 225
Cdd:PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLaDRVAVMQNGRCVE 237
|
...
gi 1840515274 226 HAR 228
Cdd:PRK15134 238 QNR 240
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
29-224 |
1.84e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 108.67 E-value: 1.84e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 29 ELTVHAGELVALVGPSGAGKSTLL-HIAGLLErPTAGTVRIAGTDVSALDDGKRTEVRRRSVGFVYQFhhllPEFSALEN 107
Cdd:PRK13643 26 DLEVKKGSYTALIGHTGSGKSTLLqHLNGLLQ-PTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQF----PESQLFEE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 108 IVL------PQMInGVAKRTARERALELLRMVGLEPRAGHR-PARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHT 180
Cdd:PRK13643 101 TVLkdvafgPQNF-GIPKEKAEKIAAEKLEMVGLADEFWEKsPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1840515274 181 AEGVFAMLTTIVRQARVGALIATHNLELANRMDRVFEMSDGLLV 224
Cdd:PRK13643 180 RIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII 223
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
3-221 |
3.52e-28 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 106.65 E-value: 3.52e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 3 EPMLELSGIVRTFEQagteLQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTDVSALDDGKR 81
Cdd:COG1137 1 MMTLEAENLVKSYGK----RTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYmIVGLV-KPDSGRIFLDGEDITHLPMHKR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 82 TevrRRSVGFVYQ----FHHLlpefSALENI--VLpQMInGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVA 155
Cdd:COG1137 76 A---RLGIGYLPQeasiFRKL----TVEDNIlaVL-ELR-KLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVE 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1840515274 156 IARALANGPGLLIADEPTGNLDPHTAEGvfamLTTIVRQAR---VGALIATHN----LELAnrmDRVFEMSDG 221
Cdd:COG1137 147 IARALATNPKFILLDEPFAGVDPIAVAD----IQKIIRHLKergIGVLITDHNvretLGIC---DRAYIISEG 212
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
15-226 |
4.93e-28 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 108.13 E-value: 4.93e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 15 FEQAGTeLQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKRTEvRRRSVGFVYQ 94
Cdd:PRK11308 22 FKPERL-VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKL-LRQKIQIVFQ 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 95 --FHHLLPEF---SALENivlPQMIN---GVAKRtaRERALELLRMVGLEPRAGHR-PARLSGGEQQRVAIARALANGPG 165
Cdd:PRK11308 100 npYGSLNPRKkvgQILEE---PLLINtslSAAER--REKALAMMAKVGLRPEHYDRyPHMFSGGQRQRIAIARALMLDPD 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 166 LLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVEH 226
Cdd:PRK11308 175 VVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIaDEVMVMYLGRCVEK 236
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
12-225 |
4.94e-28 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 106.54 E-value: 4.94e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 12 VRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLL-----ERPTAGTVRIAGTDVSALDdgkRTEVRR 86
Cdd:PRK14247 6 IRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLielypEARVSGEVYLDGQDIFKMD---VIELRR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 87 RsVGFVYQFHHLLPEFSALENIVLPQMINGVA--KRTARERALELLRMVGL----EPRAGHRPARLSGGEQQRVAIARAL 160
Cdd:PRK14247 83 R-VQMVFQIPNPIPNLSIFENVALGLKLNRLVksKKELQERVRWALEKAQLwdevKDRLDAPAGKLSGGQQQRLCIARAL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 161 ANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVgaLIATHNLELANRM-DRVFEMSDGLLVE 225
Cdd:PRK14247 162 AFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTI--VLVTHFPQQAARIsDYVAFLYKGQIVE 225
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
2-224 |
5.83e-28 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 110.39 E-value: 5.83e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 2 SEPMLELSGIVRTFEQagteLQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDV------SA 75
Cdd:PRK11288 1 SSPYLSFDGIGKTFPG----VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMrfasttAA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 76 LDDGkrtevrrrsVGFVYQFHHLLPEFSALENIVLPQMING---VAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQ 152
Cdd:PRK11288 77 LAAG---------VAIIYQELHLVPEMTVAENLYLGQLPHKggiVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQ 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 153 RVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVgALIATHnlelanRMDRVFEMSDGLLV 224
Cdd:PRK11288 148 MVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRV-ILYVSH------RMEEIFALCDAITV 212
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
30-225 |
1.82e-27 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 109.55 E-value: 1.82e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 30 LTVHAGELVALVGPSGAGKSTLLH-IAGLLerPTAGTVRIAGTDVSALDdgkrTEVRRRSVGFVYQFHHLlPEFSALENI 108
Cdd:PRK11174 371 FTLPAGQRIALVGPSGAGKTSLLNaLLGFL--PYQGSLKINGIELRELD----PESWRKHLSWVGQNPQL-PHGTLRDNV 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 109 VL--PQM----INGVAKRTareRALELLRMV--GLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHT 180
Cdd:PRK11174 444 LLgnPDAsdeqLQQALENA---WVSEFLPLLpqGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS 520
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1840515274 181 AEGVFAMLTTIVRQARVgaLIATHNLELANRMDRVFEMSDGLLVE 225
Cdd:PRK11174 521 EQLVMQALNAASRRQTT--LMVTHQLEDLAQWDQIWVMQDGQIVQ 563
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-226 |
2.24e-27 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 105.01 E-value: 2.24e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIVRTFeqagTELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTDVSALDDG 79
Cdd:PRK11701 2 MDQPLLSVRGLTKLY----GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNaLSARL-APDAGEVHYRMRDGQLRDLY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 80 KRTEVRRRSV-----GFVYQfhH----LLPEFSALENIVLPQMINGVAK-RTARERALELLRMVGLEP-RAGHRPARLSG 148
Cdd:PRK11701 77 ALSEAERRRLlrtewGFVHQ--HprdgLRMQVSAGGNIGERLMAVGARHyGDIRATAGDWLERVEIDAaRIDDLPTTFSG 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 149 GEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELAnRM--DRVFEMSDGLLVEH 226
Cdd:PRK11701 155 GMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVA-RLlaHRLLVMKQGRVVES 233
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-227 |
3.44e-27 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 108.37 E-value: 3.44e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 2 SEPMLELSGIvrTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHiagLLER---PTAGTVRIAGTDVSALDD 78
Cdd:PRK11160 335 DQVSLTLNNV--SFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQ---LLTRawdPQQGEILLNGQPIADYSE 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 79 gkrtEVRRRSVGFVYQFHHLlpeFSAL--ENIVLpqmingvAKRTARERAL-ELLRMVGLEPRA------------GHRP 143
Cdd:PRK11160 410 ----AALRQAISVVSQRVHL---FSATlrDNLLL-------AAPNASDEALiEVLQQVGLEKLLeddkglnawlgeGGRQ 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 144 arLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVgaLIATHNLELANRMDRVFEMSDGLL 223
Cdd:PRK11160 476 --LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTV--LMITHRLTGLEQFDRICVMDNGQI 551
|
....
gi 1840515274 224 VEHA 227
Cdd:PRK11160 552 IEQG 555
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
17-225 |
4.31e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 104.86 E-value: 4.31e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 17 QAGT--ELQVLRGAELTVHAGELVALVGPSGAGKSTLL-HIAGLLeRPTAGTVRIAGTDVSALDDGKRTEVRRRSVGFVY 93
Cdd:PRK13646 13 QKGTpyEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIqNINALL-KPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVF 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 94 QFhhllPEFSALENIVLPQMINGVAK-----RTARERALELLRMVGLePR--AGHRPARLSGGEQQRVAIARALANGPGL 166
Cdd:PRK13646 92 QF----PESQLFEDTVEREIIFGPKNfkmnlDEVKNYAHRLLMDLGF-SRdvMSQSPFQMSGGQMRKIAIVSILAMNPDI 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 167 LIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNL-ELANRMDRVFEMSDGLLVE 225
Cdd:PRK13646 167 IVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMnEVARYADEVIVMKEGSIVS 226
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
4-221 |
7.46e-27 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 106.46 E-value: 7.46e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 4 PMLELSGIVRTFeqagTELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLErPTAGTVRIAGTDVSALDdgkRT 82
Cdd:PRK09536 2 PMIDVSDLSVEF----GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRaINGTLT-PTAGTVLVAGDDVEALS---AR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 83 EVRRRsVGFVYQFHHLLPEFSALENIVL---PQM----INGVAKRTARERALEllrMVGLEPRAGHRPARLSGGEQQRVA 155
Cdd:PRK09536 74 AASRR-VASVPQDTSLSFEFDVRQVVEMgrtPHRsrfdTWTETDRAAVERAME---RTGVAQFADRPVTSLSGGERQRVL 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1840515274 156 IARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVgALIATHNLELANRM-DRVFEMSDG 221
Cdd:PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKT-AVAAIHDLDLAARYcDELVLLADG 215
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
23-226 |
9.39e-27 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 102.74 E-value: 9.39e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTDVSALDDGKRTevrRRSVGFVYQFHHLLPE 101
Cdd:TIGR04406 15 KVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYmIVGLV-RPDAGKILIDGQDITHLPMHERA---RLGIGYLPQEASIFRK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 102 FSALENIVLPQMINGVAKRTARERALE-LLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPhT 180
Cdd:TIGR04406 91 LTVEENIMAVLEIRKDLDRAEREERLEaLLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKFILLDEPFAGVDP-I 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1840515274 181 AEGVFAMLTTIVRQARVGALIATHNL-ELANRMDRVFEMSDGLLVEH 226
Cdd:TIGR04406 170 AVGDIKKIIKHLKERGIGVLITDHNVrETLDICDRAYIISDGKVLAE 216
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
14-225 |
1.18e-26 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 106.97 E-value: 1.18e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 14 TFEQAGTElQVLRGAELTVHAGELVALVGPSGAGKSTLLhiaGLLER---PTAGTVRIAGTDVSALDdgkrTEVRRRSVG 90
Cdd:PRK13657 341 SFSYDNSR-QGVEDVSFEAKPGQTVAIVGPTGAGKSTLI---NLLQRvfdPQSGRILIDGTDIRTVT----RASLRRNIA 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 91 FVYQfHHLLPEFSALENIVL------PQMINGVAKRTArerALELL--RMVGLEPRAGHRPARLSGGEQQRVAIARALAN 162
Cdd:PRK13657 413 VVFQ-DAGLFNRSIEDNIRVgrpdatDEEMRAAAERAQ---AHDFIerKPDGYDTVVGERGRQLSGGERQRLAIARALLK 488
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1840515274 163 GPGLLIADEPTGNLDPHTAEGVFAMLTTiVRQARVGALIAtHNLELANRMDRVFEMSDGLLVE 225
Cdd:PRK13657 489 DPPILILDEATSALDVETEAKVKAALDE-LMKGRTTFIIA-HRLSTVRNADRILVFDNGRVVE 549
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
19-221 |
1.36e-26 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 106.76 E-value: 1.36e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 19 GTELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTDVSALDDgkrtEVRRRSVGFvyqfhh 97
Cdd:COG4618 342 GSKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARlLVGVW-PPTAGSVRLDGADLSQWDR----EELGRHIGY------ 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 98 lLPEFSAL------ENIvlpqmingvakrtAR------ERALELLRMVGL-----------EPRAGHRPARLSGGEQQRV 154
Cdd:COG4618 411 -LPQDVELfdgtiaENI-------------ARfgdadpEKVVAAAKLAGVhemilrlpdgyDTRIGEGGARLSGGQRQRI 476
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1840515274 155 AIARALANGPGLLIADEPTGNLDphtAEGVFAMLTTI--VRQARVGALIATHNLELANRMDRVFEMSDG 221
Cdd:COG4618 477 GLARALYGDPRLVVLDEPNSNLD---DEGEAALAAAIraLKARGATVVVITHRPSLLAAVDKLLVLRDG 542
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
30-211 |
1.93e-26 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 101.97 E-value: 1.93e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 30 LTVHAGELVALVGPSGAGKSTLLH-IAGLLErPTAGTVRIAGtdvsalDDGKRTEVRRRSVGFVYQFHHLLPEFSALENI 108
Cdd:PRK10771 20 LTVERGERVAILGPSGAGKSTLLNlIAGFLT-PASGSLTLNG------QDHTTTPPSRRPVSMLFQENNLFSHLTVAQNI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 109 VL---PQM-INGVAKRTARERAlellRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGV 184
Cdd:PRK10771 93 GLglnPGLkLNAAQREKLHAIA----RQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEM 168
|
170 180
....*....|....*....|....*..
gi 1840515274 185 FAMLTTIVRQARVGALIATHNLELANR 211
Cdd:PRK10771 169 LTLVSQVCQERQLTLLMVSHSLEDAAR 195
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
21-224 |
2.03e-26 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 102.03 E-value: 2.03e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 21 ELQVLRGAELTVHAGELVALVGPSGAGKSTLLHI-AGLLeRPTAGTVRIAGtdvsaLDDGKRTEVRRRSVGFVY-QFHHL 98
Cdd:cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKIlSGLL-QPTSGEVRVAG-----LVPWKRRKKFLRRIGVVFgQKTQL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 99 LPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAgHRPAR-LSGGEQQRVAIARALANGPGLLIADEPTGNLD 177
Cdd:cd03267 107 WWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELL-DTPVRqLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1840515274 178 PHTAEGVFAMLTTIVRQARVGALIATHNL-ELANRMDRVFEMSDGLLV 224
Cdd:cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMkDIEALARRVLVIDKGRLL 233
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-224 |
2.50e-26 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 106.02 E-value: 2.50e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIVRTFeqagTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGK 80
Cdd:PRK09700 1 MATPYISMAGIGKSF----GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 81 RTEVrrrSVGFVYQFHHLLPEFSALENIVLPQM-------INGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQR 153
Cdd:PRK09700 77 AAQL---GIGIIYQELSVIDELTVLENLYIGRHltkkvcgVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQM 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1840515274 154 VAIARALANGPGLLIADEPTGNLDPHTAEGVFAmlttIVRQAR---VGALIATHNL-ELANRMDRVFEMSDGLLV 224
Cdd:PRK09700 154 LEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFL----IMNQLRkegTAIVYISHKLaEIRRICDRYTVMKDGSSV 224
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
2-219 |
3.06e-26 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 101.33 E-value: 3.06e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 2 SEPMLELSGIvrTFEQAGTelQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALddgkR 81
Cdd:PRK10247 4 NSPLLQLQNV--GYLAGDA--KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTL----K 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 82 TEVRRRSVGFVYQFHHLLPEfSALENIVLPQMINGvaKRTARERALELLRMVGL-EPRAGHRPARLSGGEQQRVAIARAL 160
Cdd:PRK10247 76 PEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN--QQPDPAIFLDDLERFALpDTILTKNIAELSGGEKQRISLIRNL 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1840515274 161 ANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRMDRVFEMS 219
Cdd:PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQ 211
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
2-224 |
3.18e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 102.38 E-value: 3.18e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 2 SEPMLELSGIvrTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHI-AGLLeRPTAGTVRIAGTDVSALDdgk 80
Cdd:PRK13632 4 KSVMIKVENV--SFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKIlTGLL-KPQSGEIKIDGITISKEN--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 81 RTEVRRRsVGFVYQ-----FHHLLPE----FSaLENIVLP-----QMINGVAKRTARERALEllrmvglepragHRPARL 146
Cdd:PRK13632 78 LKEIRKK-IGIIFQnpdnqFIGATVEddiaFG-LENKKVPpkkmkDIIDDLAKKVGMEDYLD------------KEPQNL 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1840515274 147 SGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIvRQARVGALIA-THNLELANRMDRVFEMSDGLLV 224
Cdd:PRK13632 144 SGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDL-RKTRKKTLISiTHDMDEAILADKVIVFSEGKLI 221
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
19-226 |
5.27e-26 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 99.55 E-value: 5.27e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 19 GTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHI-AGLLERP-TAGTVRIAGTDVSAlddgkrtEVRRRSVGFVYQfh 96
Cdd:cd03213 19 KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAlAGRRTGLgVSGEVLINGRPLDK-------RSFRKIIGYVPQ-- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 97 hllpefsalENIVLPQMingvakrTARErALE---LLRmvglepraghrpaRLSGGEQQRVAIARALANGPGLLIADEPT 173
Cdd:cd03213 90 ---------DDILHPTL-------TVRE-TLMfaaKLR-------------GLSGGERKRVSIALELVSNPSLLFLDEPT 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1840515274 174 GNLDPHTAEGVFAMLTTIVRQARVGaLIATHNL--ELANRMDRVFEMSDGLLVEH 226
Cdd:cd03213 140 SGLDSSSALQVMSLLRRLADTGRTI-ICSIHQPssEIFELFDKLLLLSQGRVIYF 193
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-221 |
5.59e-26 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 101.22 E-value: 5.59e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIVRTFeqaGTELQVlRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGK 80
Cdd:PRK11300 1 MSQPLLSVSGLMMRF---GGLLAV-NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 81 rteVRRRsvGFVYQFHH--LLPEFSALENIVLPQ-------MINGV--------AKRTARERALELLRMVGLEPRAGHRP 143
Cdd:PRK11300 77 ---IARM--GVVRTFQHvrLFREMTVIENLLVAQhqqlktgLFSGLlktpafrrAESEALDRAATWLERVGLLEHANRQA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 144 ARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELAnrM---DRVFEMSD 220
Cdd:PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLV--MgisDRIYVVNQ 229
|
.
gi 1840515274 221 G 221
Cdd:PRK11300 230 G 230
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
23-226 |
6.30e-26 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 100.38 E-value: 6.30e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTllhIAGLLER---PTAGTVRIAGTDVSALddgKRTEVRRRsVGFVYQFHHLL 99
Cdd:cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTT---LINLLMRfydPQKGQILIDGIDIRDI---SRKSLRSM-IGVVLQDTFLF 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 100 PEfSALENIvlpQMINGVAKRTARERALELLRMV--------GLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADE 171
Cdd:cd03254 90 SG-TIMENI---RLGRPNATDEEVIEAAKEAGAHdfimklpnGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDE 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1840515274 172 PTGNLDPHTAEGVFAMLTTIvRQARVGALIAtHNLELANRMDRVFEMSDGLLVEH 226
Cdd:cd03254 166 ATSNIDTETEKLIQEALEKL-MKGRTSIIIA-HRLSTIKNADKILVLDDGKIIEE 218
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
23-225 |
7.76e-26 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 100.29 E-value: 7.76e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTDVSALDDGKRTevrRRSVGFVYQFHHLLPE 101
Cdd:TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKtLMGLL-PVKSGSIRLDGEDITKLPPHERA---RAGIAYVPQGREIFPR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 102 FSALENIVLpqminGVAKRTARERAL--ELLRM--VGLEPRagHRPA-RLSGGEQQRVAIARALANGPGLLIADEPTGNL 176
Cdd:TIGR03410 90 LTVEENLLT-----GLAALPRRSRKIpdEIYELfpVLKEML--GRRGgDLSGGQQQQLAIARALVTRPKLLLLDEPTEGI 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1840515274 177 DPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVE 225
Cdd:TIGR03410 163 QPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELaDRYYVMERGRVVA 212
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
16-224 |
2.97e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 99.78 E-value: 2.97e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 16 EQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLL-HIAGLLeRPTAGTVRIAGTDVSalDDGKRTEVRRRSvGFVYQ 94
Cdd:PRK13633 17 NEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAkHMNALL-IPSEGKVYVDGLDTS--DEENLWDIRNKA-GMVFQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 95 FhhllPEFSALENIVL------PQMInGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLI 168
Cdd:PRK13633 93 N----PDNQIVATIVEedvafgPENL-GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECII 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 169 ADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRMDRVFEMSDGLLV 224
Cdd:PRK13633 168 FDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVV 223
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-225 |
3.85e-25 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 99.08 E-value: 3.85e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIVRTFEQAgtelQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLL-----ERPTAGTVRIAGTDVSa 75
Cdd:PRK14239 1 MTEPILQVSDLSVYYNKK----KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMndlnpEVTITGSIVYNGHNIY- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 76 lddGKRTEV--RRRSVGFVYQFHHLLPeFSALENIVLPQMINGVAKRTARERALEL-LRMVGL----EPRAGHRPARLSG 148
Cdd:PRK14239 76 ---SPRTDTvdLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKsLKGASIwdevKDRLHDSALGLSG 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1840515274 149 GEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVgaLIATHNLELANRM-DRVFEMSDGLLVE 225
Cdd:PRK14239 152 GQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTM--LLVTRSMQQASRIsDRTGFFLDGDLIE 227
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
23-209 |
8.89e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 98.65 E-value: 8.89e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKST-LLHIAGLlERPTAGTVRIAGTDVSAlddgkRTEVRRRS-VGFVYQFhhllP 100
Cdd:PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTlLLHLNGI-YLPQRGRVKVMGREVNA-----ENEKWVRSkVGLVFQD----P 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 101 E---FSA--LENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGN 175
Cdd:PRK13647 89 DdqvFSStvWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAY 168
|
170 180 190
....*....|....*....|....*....|....
gi 1840515274 176 LDPHTAEGVFAMLTTIVRQARVgALIATHNLELA 209
Cdd:PRK13647 169 LDPRGQETLMEILDRLHNQGKT-VIVATHDVDLA 201
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
21-204 |
9.06e-25 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 96.66 E-value: 9.06e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 21 ELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVsalddGKRTEVRRRSVGFVYQFHHLLP 100
Cdd:TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPL-----AEQRDEPHENILYLGHLPGLKP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 101 EFSALENIVLPQMINGVAKRTArERALELLRMVGLEpragHRPAR-LSGGEQQRVAIARALANGPGLLIADEPTGNLDPh 179
Cdd:TIGR01189 87 ELSALENLHFWAAIHGGAQRTI-EDALAAVGLTGFE----DLPAAqLSAGQQRRLALARLWLSRRPLWILDEPTTALDK- 160
|
170 180
....*....|....*....|....*...
gi 1840515274 180 taEGVfAMLTTIVRQ--ARVG-ALIATH 204
Cdd:TIGR01189 161 --AGV-ALLAGLLRAhlARGGiVLLTTH 185
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
3-224 |
1.68e-24 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 100.49 E-value: 1.68e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 3 EPMLELSGIVRTFEQAGTelqVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTDVSALDdgkR 81
Cdd:COG3845 255 EVVLEVENLSVRDDRGVP---ALKDVSLEVRAGEILGIAGVAGNGQSELAEaLAGLR-PPASGSIRLDGEDITGLS---P 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 82 TEVRRRSVGFVYQ--FHH-LLPEFSALENIVL-----PQMING--VAKRTARERALELLRMVGLEPRAGHRPAR-LSGGE 150
Cdd:COG3845 328 RERRRLGVAYIPEdrLGRgLVPDMSVAENLILgryrrPPFSRGgfLDRKAIRAFAEELIEEFDVRTPGPDTPARsLSGGN 407
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1840515274 151 QQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTiVRQARVGALIATHNL-ELANRMDRVFEMSDGLLV 224
Cdd:COG3845 408 QQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLE-LRDAGAAVLLISEDLdEILALSDRIAVMYEGRIV 481
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
23-225 |
1.92e-24 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 97.22 E-value: 1.92e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLL-----ERPTAGTVRIAGTDVSAlDDGKRTEVRRRsVGFVYQFHH 97
Cdd:PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLlelneEARVEGEVRLFGRNIYS-PDVDPIEVRRE-VGMVFQYPN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 98 LLPEFSALENIVLPQMINGVAKRTAR--ERALELLRMVGL----EPRAGHRPARLSGGEQQRVAIARALANGPGLLIADE 171
Cdd:PRK14267 96 PFPHLTIYDNVAIGVKLNGLVKSKKEldERVEWALKKAALwdevKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1840515274 172 PTGNLDPHTAEGVFAMLTTIVRQARVgaLIATHNLELANRM-DRVFEMSDGLLVE 225
Cdd:PRK14267 176 PTANIDPVGTAKIEELLFELKKEYTI--VLVTHSPAQAARVsDYVAFLYLGKLIE 228
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
14-225 |
2.24e-24 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 95.07 E-value: 2.24e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 14 TFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLhiaGLLER---PTAGTVRIAGTDVSALDDgkrteVRRRSVG 90
Cdd:cd03247 7 SFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLL---QLLTGdlkPQQGEITLDGVPVSDLEK-----ALSSLIS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 91 FVYQFHHLlpeFSAlenivlpqmingvakrtareralELLRMVGlepraghrpARLSGGEQQRVAIARALANGPGLLIAD 170
Cdd:cd03247 79 VLNQRPYL---FDT-----------------------TLRNNLG---------RRFSGGERQRLALARILLQDAPIVLLD 123
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 171 EPTGNLDPHTAEgvfAMLTTIVRQARVGALI-ATHNLELANRMDRVFEMSDGLLVE 225
Cdd:cd03247 124 EPTVGLDPITER---QLLSLIFEVLKDKTLIwITHHLTGIEHMDKILFLENGKIIM 176
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
25-224 |
2.35e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 97.37 E-value: 2.35e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 25 LRGAELTVHAGELVALVGPSGAGKSTL-LHIAGLLeRPTAGTVRIAGTDvsALDDGKRTEVRRRsVGFVYQFhhllPEFS 103
Cdd:PRK13644 18 LENINLVIKKGEYIGIIGKNGSGKSTLaLHLNGLL-RPQKGKVLVSGID--TGDFSKLQGIRKL-VGIVFQN----PETQ 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 104 AL------------ENIVLPQMingvakrTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADE 171
Cdd:PRK13644 90 FVgrtveedlafgpENLCLPPI-------EIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDE 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1840515274 172 PTGNLDPHTAEGVFAMLTTIVRQARVGALIaTHNLELANRMDRVFEMSDGLLV 224
Cdd:PRK13644 163 VTSMLDPDSGIAVLERIKKLHEKGKTIVYI-THNLEELHDADRIIVMDRGKIV 214
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
24-221 |
3.64e-24 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 94.42 E-value: 3.64e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGlLERPTAGTVRIAGTDVSALDDGKRtevRRRSVGFV---YQFHHLL 99
Cdd:cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEaLFG-LRPPASGEITLDGKPVTRRSPRDA---IRAGIAYVpedRKREGLV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 100 PEFSALENIVLPQMingvakrtareralellrmvglepraghrparLSGGEQQRVAIARALANGPGLLIADEPTGNLDPH 179
Cdd:cd03215 91 LDLSVAENIALSSL--------------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVG 138
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1840515274 180 TAEGVFAMlttIVRQARVGA---LIATHNLELANRMDRVFEMSDG 221
Cdd:cd03215 139 AKAEIYRL---IRELADAGKavlLISSELDELLGLCDRILVMYEG 180
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
35-229 |
4.03e-24 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 99.74 E-value: 4.03e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 35 GELVALVGPSGAGKSTLLHI-AGLLERPT--AGTVRIAGTDVSAlddgkrTEVRRRSvGFVYQFHHLLPEFSALENIVLP 111
Cdd:TIGR00955 51 GELLAVMGSSGAGKTTLMNAlAFRSPKGVkgSGSVLLNGMPIDA------KEMRAIS-AYVQQDDLFIPTLTVREHLMFQ 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 112 ---QMINGVAKRTARERALELLRMVGLEPRAGHR---PAR---LSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAE 182
Cdd:TIGR00955 124 ahlRMPRRVTKKEKRERVDEVLQALGLRKCANTRigvPGRvkgLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAY 203
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1840515274 183 GVFAMLTTIVRQARVgALIATH--NLELANRMDRVFEMSDGLLVEHARV 229
Cdd:TIGR00955 204 SVVQVLKGLAQKGKT-IICTIHqpSSELFELFDKIILMAEGRVAYLGSP 251
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
14-228 |
4.66e-24 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 95.63 E-value: 4.66e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 14 TFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDdgkrTEVRRRSVGFVY 93
Cdd:cd03252 7 RFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALAD----PAWLRRQVGVVL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 94 QfHHLLPEFSALENIVL--PQMingvakrtARERALELLRMV-----------GLEPRAGHRPARLSGGEQQRVAIARAL 160
Cdd:cd03252 83 Q-ENVLFNRSIRDNIALadPGM--------SMERVIEAAKLAgahdfiselpeGYDTIVGEQGAGLSGGQRQRIAIARAL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1840515274 161 ANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVrqARVGALIATHNLELANRMDRVFEMSDGLLVEHAR 228
Cdd:cd03252 154 IHNPRILIFDEATSALDYESEHAIMRNMHDIC--AGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGS 219
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
4-224 |
6.26e-24 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 98.97 E-value: 6.26e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 4 PMLELSGIVRTFeqAGTElqVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKRTE 83
Cdd:PRK15439 10 PLLCARSISKQY--SGVE--VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 84 VrrrSVGFVYQFHHLLPEFSALENIVLpqminGVAKRTARERALE-LLRMVGLEPRAGHRPARLSGGEQQRVAIARALAN 162
Cdd:PRK15439 86 L---GIYLVPQEPLLFPNLSVKENILF-----GLPKRQASMQKMKqLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMR 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1840515274 163 GPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQArVGALIATHNL-ELANRMDRVFEMSDGLLV 224
Cdd:PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQG-VGIVFISHKLpEIRQLADRISVMRDGTIA 219
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
21-226 |
6.34e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 96.62 E-value: 6.34e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 21 ELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIA-GLLERPTAGTvrIAGTDVSALDDGKRTEVR--RRSVGFVYQFhh 97
Cdd:PRK13645 23 EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTnGLIISETGQT--IVGDYAIPANLKKIKEVKrlRKEIGLVFQF-- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 98 llPEFSALENIVLPQM----IN-GVAKRTARERALELLRMVGL-EPRAGHRPARLSGGEQQRVAIARALANGPGLLIADE 171
Cdd:PRK13645 99 --PEYQLFQETIEKDIafgpVNlGENKQEAYKKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDE 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1840515274 172 PTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNlelanrMDRVFEMSDGLLVEH 226
Cdd:PRK13645 177 PTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN------MDQVLRIADEVIVMH 225
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
24-225 |
8.45e-24 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 95.50 E-value: 8.45e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLL------ERPTAGTVRIAGTDVSALDDGKRtevrRRSVGFVYQFHH 97
Cdd:PRK14246 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLieiydsKIKVDGKVLYFGKDIFQIDAIKL----RKEVGMVFQQPN 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 98 LLPEFSALENIVLPQMINGVA-KRTARERALELLRMVGLEPRAGHR---PA-RLSGGEQQRVAIARALANGPGLLIADEP 172
Cdd:PRK14246 101 PFPHLSIYDNIAYPLKSHGIKeKREIKKIVEECLRKVGLWKEVYDRlnsPAsQLSGGQQQRLTIARALALKPKVLLMDEP 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1840515274 173 TGNLDPHTAEGVFAMLTTIVRQARVgaLIATHNLELANRM-DRVFEMSDGLLVE 225
Cdd:PRK14246 181 TSMIDIVNSQAIEKLITELKNEIAI--VIVSHNPQQVARVaDYVAFLYNGELVE 232
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
31-228 |
9.01e-24 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 96.73 E-value: 9.01e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 31 TVHAGELVALVGPSGAGKS-TLLHIAGLLERP---TAGTVRIAGTDVSALDDGKRTEVRRRSVGFVYQ--FHHLLPEFSA 104
Cdd:PRK11022 29 SVKQGEVVGIVGESGSGKSvSSLAIMGLIDYPgrvMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQdpMTSLNPCYTV 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 105 ----LENIVLPQminGVAKRTARERALELLRMVGL---EPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLD 177
Cdd:PRK11022 109 gfqiMEAIKVHQ---GGNKKTRRQRAIDLLNQVGIpdpASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALD 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 178 PHTAEGVFAMLTTIVRQARVGALIATHNLEL-ANRMDRVFEMSDGLLVEHAR 228
Cdd:PRK11022 186 VTIQAQIIELLLELQQKENMALVLITHDLALvAEAAHKIIVMYAGQVVETGK 237
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
24-215 |
1.09e-23 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 93.45 E-value: 1.09e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTdvsalddgkrtevrrRSVGFVYQFHHLLPEF 102
Cdd:NF040873 7 VLHGVDLTIPAGSLTAVVGPNGSGKSTLLKvLAGVL-RPTSGTVRRAGG---------------ARVAYVPQRSEVPDSL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 103 SA-LENIVL-----PQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNL 176
Cdd:NF040873 71 PLtVRDLVAmgrwaRRGLWRRLTRDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTGL 150
|
170 180 190
....*....|....*....|....*....|....*....
gi 1840515274 177 DPHTAEGVFAMLTTIVRQARvGALIATHNLELANRMDRV 215
Cdd:NF040873 151 DAESRERIIALLAEEHARGA-TVVVVTHDLELVRRADPC 188
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
30-177 |
1.39e-23 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 97.02 E-value: 1.39e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 30 LTVHAGELVALVGPSGAGKSTLLH-IAGLlERPTAGTVRIAGTDVSALDDGKRtevrrrSVGFVYQFHHLLPEFSALENI 108
Cdd:PRK11000 24 LDIHEGEFVVFVGPSGCGKSTLLRmIAGL-EDITSGDLFIGEKRMNDVPPAER------GVGMVFQSYALYPHLSVAENM 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 109 VLPQMINGVAKRTARER---ALELLRMVGLEPRaghRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLD 177
Cdd:PRK11000 97 SFGLKLAGAKKEEINQRvnqVAEVLQLAHLLDR---KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
20-229 |
1.45e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 95.25 E-value: 1.45e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 20 TELQVLRGAELTVHAGELVALVGPSGAGKSTLL-HIAGLLeRPTAGTVRIAGTDVSAlddgKRTEVRRRSVGFVYQFHHL 98
Cdd:PRK13652 15 GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFrHFNGIL-KPTSGSVLIRGEPITK----ENIREVRKFVGLVFQNPDD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 99 LPEFSALENIVLPQMIN-GVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLD 177
Cdd:PRK13652 90 QIFSPTVEQDIAFGPINlGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLD 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1840515274 178 PHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVEHARV 229
Cdd:PRK13652 170 PQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMaDYIYVMDKGRIVAYGTV 222
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
5-224 |
2.21e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 95.69 E-value: 2.21e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTF-EQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLL-HIAGLLeRPTAGTVRIAGTDVSALDDGKRT 82
Cdd:PRK13631 21 ILRVKNLYCVFdEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVtHFNGLI-KSKYGTIQVGDIYIGDKKNNHEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 83 EVR------------RRSVGFVYQFhhllPEFSALE-----NIVLPQMINGVAKRTARERALELLRMVGL-EPRAGHRPA 144
Cdd:PRK13631 100 ITNpyskkiknfkelRRRVSMVFQF----PEYQLFKdtiekDIMFGPVALGVKKSEAKKLAKFYLNKMGLdDSYLERSPF 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 145 RLSGGEQQRVAIARALANGPGLLIADEPTGNLDPhtaEGVFAMLTTIVRQARVG--ALIATHnlelanRMDRVFEMSDGL 222
Cdd:PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDP---KGEHEMMQLILDAKANNktVFVITH------TMEHVLEVADEV 246
|
..
gi 1840515274 223 LV 224
Cdd:PRK13631 247 IV 248
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
14-226 |
2.42e-23 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 97.48 E-value: 2.42e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 14 TFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLlhiAGLLER---PTAGTVRIAGTDVSALddgkRTEVRRRSVG 90
Cdd:TIGR02203 337 TFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTL---VNLIPRfyePDSGQILLDGHDLADY----TLASLRRQVA 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 91 FVYQFHHLLPEFSAlENIVLPQMinGVAKRTARERALE---LLRMV-----GLEPRAGHRPARLSGGEQQRVAIARALAN 162
Cdd:TIGR02203 410 LVSQDVVLFNDTIA-NNIAYGRT--EQADRAEIERALAaayAQDFVdklplGLDTPIGENGVLLSGGQRQRLAIARALLK 486
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1840515274 163 GPGLLIADEPTGNLDPHTAEGVFAMLTTIVrQARVGALIAtHNLELANRMDRVFEMSDGLLVEH 226
Cdd:TIGR02203 487 DAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIA-HRLSTIEKADRIVVMDDGRIVER 548
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
24-206 |
5.02e-23 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 96.66 E-value: 5.02e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLErPTAGTVRIAGTDVSALDDgkrTEVRRRsVGFVYQFHHLLpEF 102
Cdd:TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLAtLAGLLD-PLQGEVTLDGVPVSSLDQ---DEVRRR-VSVCAQDAHLF-DT 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 103 SALENIVLpqmingVAKRTARERALELLRMVGLEPRAGHRP-----------ARLSGGEQQRVAIARALANGPGLLIADE 171
Cdd:TIGR02868 424 TVRENLRL------ARPDATDEELWAALERVGLADWLRALPdgldtvlgeggARLSGGERQRLALARALLADAPILLLDE 497
|
170 180 190
....*....|....*....|....*....|....*
gi 1840515274 172 PTGNLDPHTAEGVFAMLTTIVRQARVgaLIATHNL 206
Cdd:TIGR02868 498 PTEHLDAETADELLEDLLAALSGRTV--VLITHHL 530
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
14-221 |
5.55e-23 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 96.65 E-value: 5.55e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 14 TFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDdgkrTEVRRRSVGFVY 93
Cdd:TIGR01842 323 TIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWD----RETFGKHIGYLP 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 94 QFHHLLPEFSAlENI------VLPQMINGVAKRT-ARERALELLRmvGLEPRAGHRPARLSGGEQQRVAIARALANGPGL 166
Cdd:TIGR01842 399 QDVELFPGTVA-ENIarfgenADPEKIIEAAKLAgVHELILRLPD--GYDTVIGPGGATLSGGQRQRIALARALYGDPKL 475
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1840515274 167 LIADEPTGNLDphtAEGVFAMLTTI--VRQARVGALIATHNLELANRMDRVFEMSDG 221
Cdd:TIGR01842 476 VVLDEPNSNLD---EEGEQALANAIkaLKARGITVVVITHRPSLLGCVDKILVLQDG 529
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
24-221 |
6.58e-23 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 96.29 E-value: 6.58e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLLHI-AGLLErPTAGTVRIAGtdvsalddGKRtevrrrsVGFVYQFHHLLPEF 102
Cdd:COG0488 13 LLDDVSLSINPGDRIGLVGRNGAGKSTLLKIlAGELE-PDSGEVSIPK--------GLR-------IGYLPQEPPLDDDL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 103 SALENIV------------------LPQMINGVAKR--------------TARERALELLRMVGLEPRAGHRP-ARLSGG 149
Cdd:COG0488 77 TVLDTVLdgdaelraleaeleeleaKLAEPDEDLERlaelqeefealggwEAEARAEEILSGLGFPEEDLDRPvSELSGG 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1840515274 150 EQQRVAIARALANGPGLLIADEPTGNLDphtAEGVfAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDG 221
Cdd:COG0488 157 WRRRVALARALLSEPDLLLLDEPTNHLD---LESI-EWLEEFLKNYPGTVLVVSHDRYFLDRVaTRILELDRG 225
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
21-225 |
7.56e-23 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 96.33 E-value: 7.56e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 21 ELQVLRGAELTVHAGELVALVGPSGAGKSTllhIAGLLER---PTAGTVRIAGTDVSALDDgkrtEVRRRSVGFVYQfHH 97
Cdd:TIGR00958 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKST---VAALLQNlyqPTGGQVLLDGVPLVQYDH----HYLHRQVALVGQ-EP 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 98 LLPEFSALENIV-------LPQMINGVAKRTARERALELLRmvGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIAD 170
Cdd:TIGR00958 565 VLFSGSVRENIAygltdtpDEEIMAAAKAANAHDFIMEFPN--GYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILD 642
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1840515274 171 EPTGNLDphtAEGVFAMLTTIVRQARVGALIAtHNLELANRMDRVFEMSDGLLVE 225
Cdd:TIGR00958 643 EATSALD---AECEQLLQESRSRASRTVLLIA-HRLSTVERADQILVLKKGSVVE 693
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
21-210 |
9.43e-23 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 91.94 E-value: 9.43e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 21 ELQVLRGAELTVHAGELVALVGPSGAGKSTLL-HIAG-LLERPTAGTVRIAGTDVSalddgkrtevrrrsvgfvyqfhhl 98
Cdd:COG2401 42 ERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLrLLAGaLKGTPVAGCVDVPDNQFG------------------------ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 99 lPEFSALENIVLPQMINgvakrtareRALELLRMVGL-EP---RAghRPARLSGGEQQRVAIARALANGPGLLIADEPTG 174
Cdd:COG2401 98 -REASLIDAIGRKGDFK---------DAVELLNAVGLsDAvlwLR--RFKELSTGQKFRFRLALLLAERPKLLVIDEFCS 165
|
170 180 190
....*....|....*....|....*....|....*.
gi 1840515274 175 NLDPHTAEGVFAMLTTIVRQARVGALIATHNLELAN 210
Cdd:COG2401 166 HLDRQTAKRVARNLQKLARRAGITLVVATHHYDVID 201
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
25-211 |
1.22e-22 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 92.54 E-value: 1.22e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 25 LRGAELTVHAGELVALVGPSGAGKSTLLH----IAGLLERPTA-GTVRIAGTDVSAlDDGKRTEVRRRsVGFVYQFHHLL 99
Cdd:PRK14243 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRcfnrLNDLIPGFRVeGKVTFHGKNLYA-PDVDPVEVRRR-IGMVFQKPNPF 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 100 PEfSALENIVLPQMING-------VAKRTARERAL-----ELLRMVGLEpraghrparLSGGEQQRVAIARALANGPGLL 167
Cdd:PRK14243 104 PK-SIYDNIAYGARINGykgdmdeLVERSLRQAALwdevkDKLKQSGLS---------LSGGQQQRLCIARAIAVQPEVI 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1840515274 168 IADEPTGNLDPHTAEGVFAMLTTIVRQARVgaLIATHNLELANR 211
Cdd:PRK14243 174 LMDEPCSALDPISTLRIEELMHELKEQYTI--IIVTHNMQQAAR 215
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
21-225 |
1.42e-22 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 91.44 E-value: 1.42e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 21 ELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGkrtevrrrsVGFvyqfhhlLP 100
Cdd:cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLG---------GGF-------NP 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 101 EFSALENIVLPQMINGVAKRTARERALELLRMVGLEpRAGHRPAR-LSGGEQQRVAIARALANGPGLLIADEPTGNLDPH 179
Cdd:cd03220 98 ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELG-DFIDLPVKtYSSGMKARLAFAIATALEPDILLIDEVLAVGDAA 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1840515274 180 TAEGVFAMLTTIVRQARvGALIATHNLELANRM-DRVFEMSDGLLVE 225
Cdd:cd03220 177 FQEKCQRRLRELLKQGK-TVILVSHDPSSIKRLcDRALVLEKGKIRF 222
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
3-225 |
1.52e-22 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 92.20 E-value: 1.52e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 3 EPMLELSGIVRTFEQAgtelQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLErPTAGTVRIAGTD-----VSAL 76
Cdd:TIGR02323 1 KPLLQVSGLSKSYGGG----KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGcLAGRLA-PDHGTATYIMRSgaeleLYQL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 77 DDGKRTEVRRRSVGFVYQ--FHHLLPEFSALENIVLPQMINGVAKR-TARERALELLRMVGLEP-RAGHRPARLSGGEQQ 152
Cdd:TIGR02323 76 SEAERRRLMRTEWGFVHQnpRDGLRMRVSAGANIGERLMAIGARHYgNIRATAQDWLEEVEIDPtRIDDLPRAFSGGMQQ 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1840515274 153 RVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVE 225
Cdd:TIGR02323 156 RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLaQRLLVMQQGRVVE 229
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
27-225 |
3.24e-22 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 94.10 E-value: 3.24e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 27 GAELTVHAGELVALVGPSGAGKSTLLHI-AGLLErPTAGT--VRIAGTDVSALDDGKRTEVR-RRSVGFVYQFHHLLPEF 102
Cdd:TIGR03269 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIiAGVLE-PTSGEvnVRVGDEWVDMTKPGPDGRGRaKRYIGILHQEYDLYPHR 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 103 SALENivLPQMIN-GVAKRTARERALELLRMVGLEPRAGHR-----PARLSGGEQQRVAIARALANGPGLLIADEPTGNL 176
Cdd:TIGR03269 381 TVLDN--LTEAIGlELPDELARMKAVITLKMVGFDEEKAEEildkyPDELSEGERHRVALAQVLIKEPRIVILDEPTGTM 458
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1840515274 177 DPHTAEGVfamlTTIVRQARVGA----LIATHNLELANRM-DRVFEMSDGLLVE 225
Cdd:TIGR03269 459 DPITKVDV----THSILKAREEMeqtfIIVSHDMDFVLDVcDRAALMRDGKIVK 508
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
21-210 |
7.94e-22 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 89.16 E-value: 7.94e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 21 ELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGtdvsalDDGKRTEVRRRSvgfVYQFHH-- 97
Cdd:PRK13539 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRlIAGLL-PPAAGTIKLDG------GDIDDPDVAEAC---HYLGHRna 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 98 LLPEFSALENIVLPQMINGvAKRTARERALELlrmVGLEPrAGHRPAR-LSGGEQQRVAIARALANGPGLLIADEPTGNL 176
Cdd:PRK13539 84 MKPALTVAENLEFWAAFLG-GEELDIAAALEA---VGLAP-LAHLPFGyLSAGQKRRVALARLLVSNRPIWILDEPTAAL 158
|
170 180 190
....*....|....*....|....*....|....*.
gi 1840515274 177 DPHtAEGVFAMLTTIvRQARVG-ALIATHN-LELAN 210
Cdd:PRK13539 159 DAA-AVALFAELIRA-HLAQGGiVIAATHIpLGLPG 192
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
3-173 |
9.59e-22 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 92.77 E-value: 9.59e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 3 EPMLELSGIVRTfeqagtelQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLlERPTAGTVRIAGTdvsalddgkr 81
Cdd:COG1129 254 EVVLEVEGLSVG--------GVVRDVSFSVRAGEILGIAGLVGAGRTELARaLFGA-DPADSGEIRLDGK---------- 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 82 tEVRRRSV------GFVY-----QFHHLLPEFSALENIVLPQM----ING-VAKRTARERALELLRMVGLEPRAGHRPAR 145
Cdd:COG1129 315 -PVRIRSPrdairaGIAYvpedrKGEGLVLDLSIRENITLASLdrlsRGGlLDRRRERALAEEYIKRLRIKTPSPEQPVG 393
|
170 180
....*....|....*....|....*....
gi 1840515274 146 -LSGGEQQRVAIARALANGPGLLIADEPT 173
Cdd:COG1129 394 nLSGGNQQKVVLAKWLATDPKVLILDEPT 422
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
19-224 |
1.03e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 90.68 E-value: 1.03e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 19 GTElqVLRGAELTVHAGELVALVGPSGAGKSTLL-HIAGLLeRPTAGTVRIAG--TDVSAlddgKRTEVRRRSVGFVYQF 95
Cdd:PRK13636 18 GTH--ALKGININIKKGEVTAILGGNGAGKSTLFqNLNGIL-KPSSGRILFDGkpIDYSR----KGLMKLRESVGMVFQD 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 96 -HHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAgHRPAR-LSGGEQQRVAIARALANGPGLLIADEPT 173
Cdd:PRK13636 91 pDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-DKPTHcLSFGQKKRVAIAGVLVMEPKVLVLDEPT 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 174 GNLDPHTAEGVFAMLTTIVRQARVGALIATHNLEL-ANRMDRVFEMSDGLLV 224
Cdd:PRK13636 170 AGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIvPLYCDNVFVMKEGRVI 221
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
23-226 |
1.05e-21 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 89.57 E-value: 1.05e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLERpTAGTVRIAGTDVSALDDGKRTevrRRSVGFVYQFHHLLPE 101
Cdd:PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYmVVGIVPR-DAGNIIIDDEDISLLPLHARA---RRGIGYLPQEASIFRR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 102 FSALENIV-LPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHT 180
Cdd:PRK10895 93 LSVYDNLMaVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIS 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1840515274 181 AEGVFAMLTTIvRQARVGALIATHNL-ELANRMDRVFEMSDGLLVEH 226
Cdd:PRK10895 173 VIDIKRIIEHL-RDSGLGVLITDHNVrETLAVCERAYIVSQGHLIAH 218
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-226 |
1.63e-21 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 92.05 E-value: 1.63e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 4 PMLELSGIVRTFEqagtELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLErPTAGTVRIaGTDVSalddgkrt 82
Cdd:COG0488 314 KVLELEGLSKSYG----DKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKlLAGELE-PDSGTVKL-GETVK-------- 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 83 evrrrsVGFVYQFHHLL-PEFSALENIVlpqminGVAKRTARERALELLRMVGLEPRAGHRPAR-LSGGEQQRVAIARAL 160
Cdd:COG0488 380 ------IGYFDQHQEELdPDKTVLDELR------DGAPGGTEQEVRGYLGRFLFSGDDAFKPVGvLSGGEKARLALAKLL 447
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1840515274 161 ANGPGLLIADEPTGNLDPHTaegvfamlttivRQARVGALIA--------THNLELANRM-DRVFEMSDGLLVEH 226
Cdd:COG0488 448 LSPPNVLLLDEPTNHLDIET------------LEALEEALDDfpgtvllvSHDRYFLDRVaTRILEFEDGGVREY 510
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-224 |
1.94e-21 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 91.91 E-value: 1.94e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIVRTFeqagTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHI-AGLLERPT-AGTVRIAGTDVSAlDD 78
Cdd:PRK13549 1 MMEYLLEMKNITKTF----GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVlSGVYPHGTyEGEIIFEGEELQA-SN 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 79 GKRTEvrRRSVGFVYQFHHLLPEFSALENIVLPQMI--NGVAKRTA-RERALELLRMVGLEPRAGHRPARLSGGEQQRVA 155
Cdd:PRK13549 76 IRDTE--RAGIAIIHQELALVKELSVLENIFLGNEItpGGIMDYDAmYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVE 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 156 IARALANGPGLLIADEPTGNLdphtAEGVFAMLTTIVRQAR---VGALIATHNLelanrmDRVFEMSDGLLV 224
Cdd:PRK13549 154 IAKALNKQARLLILDEPTASL----TESETAVLLDIIRDLKahgIACIYISHKL------NEVKAISDTICV 215
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
32-221 |
4.13e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 88.64 E-value: 4.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 32 VHAGELVALVGPSGAGKSTLLH-IAGLLErPTAGTVRIAGTDVSAlddgKRTEVRRRSVGFVYQ-----FHHLLPE---- 101
Cdd:PRK13650 30 VKQGEWLSIIGHNGSGKSTTVRlIDGLLE-AESGQIIIDGDLLTE----ENVWDIRHKIGMVFQnpdnqFVGATVEddva 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 102 FsALENivlpqmiNGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPhta 181
Cdd:PRK13650 105 F-GLEN-------KGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP--- 173
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1840515274 182 EGVFAMLTTI--VRQARVGALIA-THNLELANRMDRVFEMSDG 221
Cdd:PRK13650 174 EGRLELIKTIkgIRDDYQMTVISiTHDLDEVALSDRVLVMKNG 216
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
5-227 |
5.66e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 88.61 E-value: 5.66e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFEQAgTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSAlddgKRTEV 84
Cdd:PRK13642 4 ILEVENLVFKYEKE-SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTA----ENVWN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 RRRSVGFVYQFHHLLPEFSALENIVLPQMIN-GVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANG 163
Cdd:PRK13642 79 LRRKIGMVFQNPDNQFVGATVEDDVAFGMENqGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALR 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1840515274 164 PGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRMDRVFEMSDGLLVEHA 227
Cdd:PRK13642 159 PEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEA 222
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
5-212 |
8.63e-21 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 89.16 E-value: 8.63e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSgivrtFEQ--AGTELQVlrgaELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKRT 82
Cdd:PRK11144 1 MLELN-----FKQqlGDLCLTV----NLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 83 EVRRRSVGFVYQFHHLLPEFSALENIVLpqminGVAKrTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALAN 162
Cdd:PRK11144 72 PPEKRRIGYVFQDARLFPHYKVRGNLRY-----GMAK-SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLT 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1840515274 163 GPGLLIADEPTGNLD-PHTAEgVFAMLTTIVRQARVGALIATHNLE----LANRM 212
Cdd:PRK11144 146 APELLLMDEPLASLDlPRKRE-LLPYLERLAREINIPILYVSHSLDeilrLADRV 199
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
24-221 |
9.25e-21 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 90.25 E-value: 9.25e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLlerPTAGTVRIAgtdvsaLDDGKRTevrrrsvgfvyqfhhllpef 102
Cdd:COG4178 378 LLEDLSLSLKPGERLLITGPSGSGKSTLLRaIAGL---WPYGSGRIA------RPAGARV-------------------- 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 103 salenIVLPQ---MING----------VAKRTARERALELLRMVGLEPRAGH------RPARLSGGEQQRVAIARALANG 163
Cdd:COG4178 429 -----LFLPQrpyLPLGtlreallypaTAEAFSDAELREALEAVGLGHLAERldeeadWDQVLSLGEQQRLAFARLLLHK 503
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1840515274 164 PGLLIADEPTGNLDPHTAEGVFAMLTTIVRQArvgALIA-THNLELANRMDRVFEMSDG 221
Cdd:COG4178 504 PDWLFLDEATSALDEENEAALYQLLREELPGT---TVISvGHRSTLAAFHDRVLELTGD 559
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
6-178 |
1.51e-20 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 86.30 E-value: 1.51e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFEQAgtelQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTDVSALDdgkrtev 84
Cdd:TIGR03740 1 LETKNLSKRFGKQ----TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKmITGIL-RPTSGEIIFDGHPWTRKD------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 rRRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKrtarERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGP 164
Cdd:TIGR03740 69 -LHKIGSLIESPPLYENLTARENLKVHTTLLGLPD----SRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHP 143
|
170
....*....|....
gi 1840515274 165 GLLIADEPTGNLDP 178
Cdd:TIGR03740 144 KLLILDEPTNGLDP 157
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
24-221 |
1.83e-20 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 85.21 E-value: 1.83e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLLhiAGLL-E-RPTAGTVRIAGtdvsalddgkrtevrrrSVGFVYQFHHLLPE 101
Cdd:cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLL--SALLgElEKLSGSVSVPG-----------------SIAYVSQEPWIQNG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 102 fSALENIVL-----PQMINGVAKRTARERALELLRMvGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNL 176
Cdd:cd03250 81 -TIRENILFgkpfdEERYEKVIKACALEPDLEILPD-GDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAV 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1840515274 177 DPHTAEGVF--------AMLTTIVrqarvgalIATHNLELANRMDRVFEMSDG 221
Cdd:cd03250 159 DAHVGRHIFencilgllLNNKTRI--------LVTHQLQLLPHADQIVVLDNG 203
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
23-221 |
2.36e-20 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 85.60 E-value: 2.36e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTllhIAGLLER---PTAGTVRIAGTDVSALDDgkrtEVRRRSVGFVYQfHHLL 99
Cdd:cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKST---VVALLENfyqPQGGQVLLDGKPISQYEH----KYLHSKVSLVGQ-EPVL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 100 PEFSALENIV--LPQ----MINGVAKRTARERALELLRMvGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPT 173
Cdd:cd03248 100 FARSLQDNIAygLQScsfeCVKEAAQKAHAHSFISELAS-GYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEAT 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1840515274 174 GNLDPHTAEGVFAMLTTIVRQARVgaLIATHNLELANRMDRVFEMSDG 221
Cdd:cd03248 179 SALDAESEQQVQQALYDWPERRTV--LVIAHRLSTVERADQILVLDGG 224
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
23-225 |
2.92e-20 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 88.72 E-value: 2.92e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTllhIAGLLER---PTAGTVRIAGTDVSALddgkRTEVRRRSVGFVYQ----F 95
Cdd:COG5265 372 PILKGVSFEVPAGKTVAIVGPSGAGKST---LARLLFRfydVTSGRILIDGQDIRDV----TQASLRAAIGIVPQdtvlF 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 96 HHllpefSALENI------VLPQMINGVAkrtareRALELLRMV-----GLEPRAGHRPARLSGGEQQRVAIARALANGP 164
Cdd:COG5265 445 ND-----TIAYNIaygrpdASEEEVEAAA------RAAQIHDFIeslpdGYDTRVGERGLKLSGGEKQRVAIARTLLKNP 513
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1840515274 165 GLLIADEPTGNLDPHTAEGVFAML-------TTIVrqarvgalIAtHNLELANRMDRVFEMSDGLLVE 225
Cdd:COG5265 514 PILIFDEATSALDSRTERAIQAALrevargrTTLV--------IA-HRLSTIVDADEILVLEAGRIVE 572
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
30-228 |
6.78e-20 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 86.11 E-value: 6.78e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 30 LTVHAGELVALVGPSGAGKSTLLH-IAGLLE---RPTAGTVRIAGTDVSALDDGKRTEVRRRSVGFVYQ--FHHLLPefS 103
Cdd:COG4170 28 LTLNEGEIRGLVGESGSGKSLIAKaICGITKdnwHVTADRFRWNGIDLLKLSPRERRKIIGREIAMIFQepSSCLDP--S 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 104 ALeniVLPQMINGVAKRT-----------ARERALELLRMVGLEpraGHR------PARLSGGEQQRVAIARALANGPGL 166
Cdd:COG4170 106 AK---IGDQLIEAIPSWTfkgkwwqrfkwRKKRAIELLHRVGIK---DHKdimnsyPHELTEGECQKVMIAMAIANQPRL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1840515274 167 LIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLE-LANRMDRVFEMSDGLLVEHAR 228
Cdd:COG4170 180 LIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLEsISQWADTITVLYCGQTVESGP 242
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
11-226 |
1.09e-19 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 84.36 E-value: 1.09e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 11 IVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLL-HIAGLLErPTAGTVRIAGTdVSALddgkrTEVrrrSV 89
Cdd:COG1134 28 LLRRRRTRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLkLIAGILE-PTSGRVEVNGR-VSAL-----LEL---GA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 90 GFVyqfhhllPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEpRAGHRPAR-LSGGEQQRVAIARALANGPGLLI 168
Cdd:COG1134 98 GFH-------PELTGRENIYLNGRLLGLSRKEIDEKFDEIVEFAELG-DFIDQPVKtYSSGMRARLAFAVATAVDPDILL 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1840515274 169 ADEPTGNLDPHTAEGVFAMLTTIVRQARvGALIATHNLELANRM-DRVFEMSDGLLVEH 226
Cdd:COG1134 170 VDEVLAVGDAAFQKKCLARIRELRESGR-TVIFVSHSMGAVRRLcDRAIWLEKGRLVMD 227
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
24-225 |
1.62e-19 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 86.72 E-value: 1.62e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDdgkRTEVRRrSVGFVYQFHHLLpEFS 103
Cdd:TIGR01193 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDID---RHTLRQ-FINYLPQEPYIF-SGS 563
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 104 ALENIVLpqminGVAKRTARERALELLRMV-----------GLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEP 172
Cdd:TIGR01193 564 ILENLLL-----GAKENVSQDEIWAACEIAeikddienmplGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDES 638
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1840515274 173 TGNLDPHTAEGVFAMLTTIvrQARVGALIAtHNLELANRMDRVFEMSDGLLVE 225
Cdd:TIGR01193 639 TSNLDTITEKKIVNNLLNL--QDKTIIFVA-HRLSVAKQSDKIIVLDHGKIIE 688
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
3-224 |
1.67e-19 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 86.21 E-value: 1.67e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 3 EPMLELSGIVRTFEQagteLQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSAldDGKRt 82
Cdd:PRK10762 2 QALLQLKGIDKAFPG----VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTF--NGPK- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 83 EVRRRSVGFVYQFHHLLPEFSALENIVLPQ----MINGVAKRTARERALELLRMVGLePRAGHRP-ARLSGGEQQRVAIA 157
Cdd:PRK10762 75 SSQEAGIGIIHQELNLIPQLTIAENIFLGRefvnRFGRIDWKKMYAEADKLLARLNL-RFSSDKLvGELSIGEQQMVEIA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1840515274 158 RALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARvGALIATHnlelanRMDRVFEMSDGLLV 224
Cdd:PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGR-GIVYISH------RLKEIFEICDDVTV 213
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
4-223 |
1.72e-19 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 86.99 E-value: 1.72e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 4 PMLELSGIVRTFEQAGTElqVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDV-SALDdgkrt 82
Cdd:TIGR01257 927 PGVCVKNLVKIFEPSGRP--AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIeTNLD----- 999
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 83 eVRRRSVGFVYQ----FHHLlpefSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIAR 158
Cdd:TIGR01257 1000 -AVRQSLGMCPQhnilFHHL----TVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAI 1074
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 159 ALANGPGLLIADEPTGNLDPHTAEGVFAMLTTiVRQARVgALIATHNLELANRM-DRVFEMSDGLL 223
Cdd:TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLK-YRSGRT-IIMSTHHMDEADLLgDRIAIISQGRL 1138
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1-221 |
1.78e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 84.03 E-value: 1.78e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIvrTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGtdvSALDDGK 80
Cdd:PRK13648 3 DKNSIIVFKNV--SFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNN---QAITDDN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 81 RTEVRRRsVGFVYQFhhllPEFSALENIVLPQMING-----VAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVA 155
Cdd:PRK13648 78 FEKLRKH-IGIVFQN----PDNQFVGSIVKYDVAFGlenhaVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 156 IARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRMDRVFEMSDG 221
Cdd:PRK13648 153 IAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKG 218
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
4-227 |
1.79e-19 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 85.24 E-value: 1.79e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 4 PMLELSGIVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLE---RPTAGTVRIAGTDVSALDDG 79
Cdd:PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKaICGVTKdnwRVTADRMRFDDIDLLRLSPR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 80 KRTEVRRRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTA--------RERALELLRMVGL-EPRAGHR--PARLSG 148
Cdd:PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRwwqrfgwrKRRAIELLHRVGIkDHKDAMRsfPYELTE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 149 GEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVEHA 227
Cdd:PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWaDKINVLYCGQTVETA 241
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
24-227 |
2.05e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 84.38 E-value: 2.05e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAG-----TVRIAGTDVSALDDgkRTEVRRRsVGFVYQFHHL 98
Cdd:PRK14271 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGyrysgDVLLGGRSIFNYRD--VLEFRRR-VGMLFQRPNP 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 99 LPeFSALENIVLPQMINGVAKR-----TARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPT 173
Cdd:PRK14271 113 FP-MSIMDNVLAGVRAHKLVPRkefrgVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPT 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1840515274 174 GNLDPHTAEGVFAMLTTIVRqaRVGALIATHNLELANRM-DRVFEMSDGLLVEHA 227
Cdd:PRK14271 192 SALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAARIsDRAALFFDGRLVEEG 244
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
20-212 |
2.10e-19 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 84.75 E-value: 2.10e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 20 TELQVLRGAELTVHAGELVALVGPSGAGKSTLLHI-AGLLeRPTAGTVRIAGTDVSAlddgKRTEVRRRsVGFVY-QFHH 97
Cdd:COG4586 33 REVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMlTGIL-VPTSGEVRVLGYVPFK----RRKEFARR-IGVVFgQRSQ 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 98 LLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAgHRPAR-LSGGEQQRVAIARALANGPGLLIADEPTGNL 176
Cdd:COG4586 107 LWWDLPAIDSFRLLKAIYRIPDAEYKKRLDELVELLDLGELL-DTPVRqLSLGQRMRCELAAALLHRPKILFLDEPTIGL 185
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1840515274 177 DPHTAEGVFAMLTTIVRQARVGALIATHNL----ELANRM 212
Cdd:COG4586 186 DVVSKEAIREFLKEYNRERGTTILLTSHDMddieALCDRV 225
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
26-190 |
2.56e-19 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 82.54 E-value: 2.56e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 26 RGAELTVHAGELVALVGPSGAGKSTLLHI-AGLLeRPTAGTVRIAGTDVSALDDgkrtevrrrsvgfvyQFHHLL----- 99
Cdd:PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRIlAGLA-RPDAGEVLWQGEPIRRQRD---------------EYHQDLlylgh 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 100 -----PEFSALENIVLPQMINGVAKRTARERALEllrMVGLEPRAgHRPAR-LSGGEQQRVAIARALANGPGLLIADEP- 172
Cdd:PRK13538 82 qpgikTELTALENLRFYQRLHGPGDDEALWEALA---QVGLAGFE-DVPVRqLSAGQQRRVALARLWLTRAPLWILDEPf 157
|
170 180
....*....|....*....|....*....
gi 1840515274 173 -----------TGNLDPHTAEGVFAMLTT 190
Cdd:PRK13538 158 taidkqgvarlEALLAQHAEQGGMVILTT 186
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
26-229 |
3.98e-19 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 82.83 E-value: 3.98e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 26 RGAELTVHAGELVALVGPSGAGKStlLHIAGLLE------RPTAGTVRIAGTDVSAlddgkrTEVRRRSVGFVYQfhHLL 99
Cdd:PRK10418 20 HGVSLTLQRGRVLALVGGSGSGKS--LTCAAALGilpagvRQTAGRVLLDGKPVAP------CALRGRKIATIMQ--NPR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 100 PEFSALENIV--LPQMINGVAKRTARERALELLRMVGLEPRA---GHRPARLSGGEQQRVAIARALANGPGLLIADEPTG 174
Cdd:PRK10418 90 SAFNPLHTMHthARETCLALGKPADDATLTAALEAVGLENAArvlKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTT 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 175 NLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVEHARV 229
Cdd:PRK10418 170 DLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLaDDVAVMSHGRIVEQGDV 225
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
15-225 |
4.31e-19 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 83.99 E-value: 4.31e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 15 FEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLErPTAGTVRIAGTDVSALDDGKRTEVRRrSVGFVY 93
Cdd:PRK15079 27 FWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARaIIGLVK-ATDGEVAWLGKDLLGMKDDEWRAVRS-DIQMIF 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 94 Q--FHHLLPEFSALENIV------LPQMingvAKRTARERALELLRMVGLEPRAGHR-PARLSGGEQQRVAIARALANGP 164
Cdd:PRK15079 105 QdpLASLNPRMTIGEIIAeplrtyHPKL----SRQEVKDRVKAMMLKVGLLPNLINRyPHEFSGGQCQRIGIARALILEP 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 165 GLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVE 225
Cdd:PRK15079 181 KLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHIsDRVLVMYLGHAVE 242
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
30-224 |
6.12e-19 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 82.20 E-value: 6.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 30 LTVHAGELVALVGPSGAGKSTLLH-IAGLLerPTAGTVRIAGTDVSALDdgKRTEVRRRSV-------GF---VYQFHHL 98
Cdd:COG4138 17 AQVNAGELIHLIGPNGAGKSTLLArMAGLL--PGQGEILLNGRPLSDWS--AAELARHRAYlsqqqspPFampVFQYLAL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 99 -LPefsalenivlpqminGVAKRTARERAL-ELLRMVGLEPRAGHRPARLSGGEQQRVAIARAL------ANGPG-LLIA 169
Cdd:COG4138 93 hQP---------------AGASSEAVEQLLaQLAEALGLEDKLSRPLTQLSGGEWQRVRLAAVLlqvwptINPEGqLLLL 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1840515274 170 DEPTGNLDPHTAegvfAMLTTIVR---QARVGALIATHNLELANR-MDRVFEMSDGLLV 224
Cdd:COG4138 158 DEPMNSLDVAQQ----AALDRLLRelcQQGITVVMSSHDLNHTLRhADRVWLLKQGKLV 212
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
2-225 |
6.63e-19 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 84.91 E-value: 6.63e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 2 SEPMLELSGIVRTF-------EQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVS 74
Cdd:PRK10261 310 GEPILQVRNLVTRFplrsgllNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 75 ALDDGKRTEVRRrSVGFVYQ--FHHLLPEFSALENIVLPQMINGVAK-RTARERALELLRMVGLEPRAGHR-PARLSGGE 150
Cdd:PRK10261 390 TLSPGKLQALRR-DIQFIFQdpYASLDPRQTVGDSIMEPLRVHGLLPgKAAAARVAWLLERVGLLPEHAWRyPHEFSGGQ 468
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 151 QQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRMD-RVFEMSDGLLVE 225
Cdd:PRK10261 469 RQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERIShRVAVMYLGQIVE 544
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
23-224 |
1.69e-18 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 81.59 E-value: 1.69e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTL-LHIAGLLeRPTAGTVRIAGtdvSALDDGKRTEVR-RRSVGFVYQFHHLLP 100
Cdd:PRK13638 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLfMNLSGLL-RPQKGAVLWQG---KPLDYSKRGLLAlRQQVATVFQDPEQQI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 101 EFSALENIVLPQMIN-GVAKRTARERALELLRMVGLEpRAGHRPAR-LSGGEQQRVAIARALANGPGLLIADEPTGNLDP 178
Cdd:PRK13638 91 FYTDIDSDIAFSLRNlGVPEAEITRRVDEALTLVDAQ-HFRHQPIQcLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDP 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1840515274 179 HTAEGVFAMLTTIVRQARvGALIATHNLELanrmdrVFEMSDGLLV 224
Cdd:PRK13638 170 AGRTQMIAIIRRIVAQGN-HVIISSHDIDL------IYEISDAVYV 208
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
23-207 |
2.31e-18 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 83.22 E-value: 2.31e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTllhiAGL-LER--PTAGTVRIAGTDVSALDDGKRTEVRRRsVGFVYQ--FHH 97
Cdd:PRK15134 300 VVVKNISFTLRPGETLGLVGESGSGKST----TGLaLLRliNSQGEIWFDGQPLHNLNRRQLLPVRHR-IQVVFQdpNSS 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 98 LLPEFSAL----ENIVLPQMINGVAKRTarERALELLRMVGLEPRAGHR-PARLSGGEQQRVAIARALANGPGLLIADEP 172
Cdd:PRK15134 375 LNPRLNVLqiieEGLRVHQPTLSAAQRE--QQVIAVMEEVGLDPETRHRyPAEFSGGQRQRIAIARALILKPSLIILDEP 452
|
170 180 190
....*....|....*....|....*....|....*
gi 1840515274 173 TGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLE 207
Cdd:PRK15134 453 TSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH 487
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
5-221 |
2.61e-18 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 82.95 E-value: 2.61e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFEqagtELQVLRGAELTVHAGELVALVGPSGAGKSTLLHI-AGLLERPT-AGTVRIAGTDVSAlddGKRT 82
Cdd:TIGR02633 1 LLEMKGIVKTFG----GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKIlSGVYPHGTwDGEIYWSGSPLKA---SNIR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 83 EVRRRSVGFVYQFHHLLPEFSALENIVLPQMINGVAKRTARE----RALELLRMVGLEPRAGHRP-ARLSGGEQQRVAIA 157
Cdd:TIGR02633 74 DTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNamylRAKNLLRELQLDADNVTRPvGDYGGGQQQLVEIA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1840515274 158 RALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIvRQARVGALIATHNL-ELANRMDRVFEMSDG 221
Cdd:TIGR02633 154 KALNKQARLLILDEPSSSLTEKETEILLDIIRDL-KAHGVACVYISHKLnEVKAVCDTICVIRDG 217
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
14-224 |
3.02e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 81.00 E-value: 3.02e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 14 TFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLERPTAGTVRIagtDVSALDDGKRT--EVRRRsVG 90
Cdd:PRK13640 12 SFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKlINGLLLPDDNPNSKI---TVDGITLTAKTvwDIREK-VG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 91 FVYQFhhllPEFS------------ALENIVLP--QMINGVAKrtareraleLLRMVGLEPRAGHRPARLSGGEQQRVAI 156
Cdd:PRK13640 88 IVFQN----PDNQfvgatvgddvafGLENRAVPrpEMIKIVRD---------VLADVGMLDYIDSEPANLSGGQKQRVAI 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1840515274 157 ARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRMDRVFEMSDGLLV 224
Cdd:PRK13640 155 AGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLL 222
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
23-225 |
4.73e-18 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 78.72 E-value: 4.73e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLE-RPTAGTVRIAGTDVSALDdgkrTEVR-RRSVGFVYQFhhll 99
Cdd:cd03217 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKtIMGHPKyEVTEGEILFKGEDITDLP----PEERaRLGIFLAFQY---- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 100 pefsalenivlPQMINGVakrtareRALELLRMVGlepraghrpARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPH 179
Cdd:cd03217 86 -----------PPEIPGV-------KNADFLRYVN---------EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDID 138
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1840515274 180 TAEGVFAMLTTIvRQARVGALIATHNLELANRM--DRVFEMSDGLLVE 225
Cdd:cd03217 139 ALRLVAEVINKL-REEGKSVLIITHYQRLLDYIkpDRVHVLYDGRIVK 185
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
21-224 |
5.64e-18 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 82.23 E-value: 5.64e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 21 ELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLERPT-AGTVRIagtdvsalDDGKRTEVRRRSVGFVYQFHHL 98
Cdd:PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNaLAGRIQGNNfTGTILA--------NNRKPTKQILKRTGFVTQDDIL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 99 LPEFSALENIV------LPQMINGVAKRTARERALELLRMVGLEPRA-GHRPAR-LSGGEQQRVAIARALANGPGLLIAD 170
Cdd:PLN03211 152 YPHLTVRETLVfcsllrLPKSLTKQEKILVAESVISELGLTKCENTIiGNSFIRgISGGERKRVSIAHEMLINPSLLILD 231
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1840515274 171 EPTGNLDphtAEGVFAMLTTIVRQARVGALIAThnlELANRMDRVFEMSDGLLV 224
Cdd:PLN03211 232 EPTSGLD---ATAAYRLVLTLGSLAQKGKTIVT---SMHQPSSRVYQMFDSVLV 279
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-229 |
1.09e-17 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 80.15 E-value: 1.09e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKS-TLLHIAGLLERP--TAGTVRIAGTDVSALD 77
Cdd:PRK09473 8 QADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSqTAFALMGLLAANgrIGGSATFNGREILNLP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 78 DGKRTEVRRRSVGFVYQ--FHHLLPEFSALENIVLPQMIN-GVAKRTARERALELLRMVGLePRAGHR----PARLSGGE 150
Cdd:PRK09473 88 EKELNKLRAEQISMIFQdpMTSLNPYMRVGEQLMEVLMLHkGMSKAEAFEESVRMLDAVKM-PEARKRmkmyPHEFSGGM 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 151 QQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLE-LANRMDRVFEMSDGLLVEHARV 229
Cdd:PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGvVAGICDKVLVMYAGRTMEYGNA 246
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
21-222 |
1.12e-17 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 77.92 E-value: 1.12e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 21 ELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTdvsalDDGKRTEVRRRSVGFVYQFHHLLP 100
Cdd:cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG-----PLDFQRDSIARGLLYLGHAPGIKT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 101 EFSALENIVLPQMINGvakRTARERALELLRMVGLEpragHRP-ARLSGGEQQRVAIARALANGPGLLIADEPTGNLDph 179
Cdd:cd03231 87 TLSVLENLRFWHADHS---DEQVEEALARVGLNGFE----DRPvAQLSAGQQRRVALARLLLSGRPLWILDEPTTALD-- 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1840515274 180 tAEGVfAMLTTIVRQ--ARVGALIATHNLELANRMDRVFEMSDGL 222
Cdd:cd03231 158 -KAGV-ARFAEAMAGhcARGGMVVLTTHQDLGLSEAGARELDLGF 200
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
2-229 |
1.31e-17 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 81.05 E-value: 1.31e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 2 SEPMLELSGIVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKS-TLLHIAGLLERpTAGTVRIAG---------- 70
Cdd:PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSvTALALMRLLEQ-AGGLVQCDKmllrrrsrqv 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 71 TDVSALDDGKRTEVRRRSVGFVYQ--FHHLLPEFSALENIV----LPQMINGVAKRTARERALELLRMVGLEPRAGHRPA 144
Cdd:PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQepMTSLNPVFTVGEQIAesirLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 145 RLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLE-LANRMDRVFEMSDGLL 223
Cdd:PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGvVAEIADRVLVMYQGEA 247
|
....*.
gi 1840515274 224 VEHARV 229
Cdd:PRK10261 248 VETGSV 253
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-211 |
1.86e-17 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 78.00 E-value: 1.86e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIVRTFeqagTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSaldDGK 80
Cdd:PRK11614 1 MEKVMLSFDKVSAHY----GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDIT---DWQ 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 81 RTEVRRRSVGFVYQFHHLLPEFSALENIVlpqMINGVAKRTARERALEllRMVGLEPRAGHRPAR----LSGGEQQRVAI 156
Cdd:PRK11614 74 TAKIMREAVAIVPEGRRVFSRMTVEENLA---MGGFFAERDQFQERIK--WVYELFPRLHERRIQragtMSGGEQQMLAI 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1840515274 157 ARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALI---ATHNLELANR 211
Cdd:PRK11614 149 GRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVeqnANQALKLADR 206
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
5-179 |
3.86e-17 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 77.43 E-value: 3.86e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFEQAgtelQVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKRTev 84
Cdd:COG4604 1 MIEIKNVSKRYGGK----VVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELA-- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 RRRSvgfvyqfhhllpefsaleniVLPQMINGVAKRTARE-----------------------RALELLrmvGLEPRAGH 141
Cdd:COG4604 75 KRLA--------------------ILRQENHINSRLTVRElvafgrfpyskgrltaedreiidEAIAYL---DLEDLADR 131
|
170 180 190
....*....|....*....|....*....|....*...
gi 1840515274 142 RPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPH 179
Cdd:COG4604 132 YLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMK 169
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
31-226 |
4.18e-17 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 77.57 E-value: 4.18e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 31 TVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKRTevrrRSVGFVYQFhhllPEFSALENIVL 110
Cdd:COG4167 35 TLEAGQTLAIIGENGSGKSTLAKMLAGIIEPTSGEILINGHKLEYGDYKYRC----KHIRMIFQD----PNTSLNPRLNI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 111 PQMINGVAKR----TARERA---LELLRMVGLEP-RAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPhtae 182
Cdd:COG4167 107 GQILEEPLRLntdlTAEEREeriFATLRLVGLLPeHANFYPHMLSSGQKQRVALARALILQPKIIIADEALAALDM---- 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1840515274 183 gvfAMLTTIVR-----QARVGalIA----THNLELANRM-DRVFEMSDGLLVEH 226
Cdd:COG4167 183 ---SVRSQIINlmlelQEKLG--ISyiyvSQHLGIVKHIsDKVLVMHQGEVVEY 231
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
23-212 |
4.70e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 77.38 E-value: 4.70e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERpTAGTVRIAGTdVSALDDG---KRTEVRR--RSVGFVYQFHH 97
Cdd:PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGR-VEFFNQNiyeRRVNLNRlrRQVSMVHPKPN 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 98 LLPeFSALENIVL--------PQM-INGVAkrtarERALELLRMVGLEPRAGHRPA-RLSGGEQQRVAIARALANGPGLL 167
Cdd:PRK14258 99 LFP-MSVYDNVAYgvkivgwrPKLeIDDIV-----ESALKDADLWDEIKHKIHKSAlDLSGGQQQRLCIARALAVKPKVL 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1840515274 168 IADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM 212
Cdd:PRK14258 173 LMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRL 217
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
30-180 |
5.83e-17 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 77.50 E-value: 5.83e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 30 LTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKRTEVRRRsVGFVYQFHHLLPEFSALENIV 109
Cdd:PRK11831 28 LTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR-MSMLFQSGALFTDMNVFDNVA 106
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 110 LP-QMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHT 180
Cdd:PRK11831 107 YPlREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT 178
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
31-224 |
6.98e-17 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 76.90 E-value: 6.98e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 31 TVHAGELVALVGPSGAGKSTLLH-IAGLLerPTAGTVRIAGTDVSALDDGKRTEVR------RRSVGFVYQFHHLlpefs 103
Cdd:PRK03695 18 EVRAGEILHLVGPNGAGKSTLLArMAGLL--PGSGSIQFAGQPLEAWSAAELARHRaylsqqQTPPFAMPVFQYL----- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 104 ALEnivLPQminGVAKRTARERALELLRMVGLEPRAgHRPA-RLSGGEQQRVAIARAL------ANGPG-LLIADEPTGN 175
Cdd:PRK03695 91 TLH---QPD---KTRTEAVASALNEVAEALGLDDKL-GRSVnQLSGGEWQRVRLAAVVlqvwpdINPAGqLLLLDEPMNS 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1840515274 176 LDPHTAEGVFAMLTTIVRQARvGALIATHNLelaNRM----DRVFEMSDGLLV 224
Cdd:PRK03695 164 LDVAQQAALDRLLSELCQQGI-AVVMSSHDL---NHTlrhaDRVWLLKQGKLL 212
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
14-225 |
1.25e-16 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 78.14 E-value: 1.25e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 14 TFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTllhIAGLLER---PTAGTVRIAGTDvsaLDDGKRTEVRRRsVG 90
Cdd:PRK11176 348 TFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKST---IANLLTRfydIDEGEILLDGHD---LRDYTLASLRNQ-VA 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 91 FVYQFHHLLPEFSAlENIVLPQmiNGVAKRTARERALELLRMV--------GLEPRAGHRPARLSGGEQQRVAIARALAN 162
Cdd:PRK11176 421 LVSQNVHLFNDTIA-NNIAYAR--TEQYSREQIEEAARMAYAMdfinkmdnGLDTVIGENGVLLSGGQRQRIAIARALLR 497
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1840515274 163 GPGLLIADEPTGNLDPHTAEGVFAMLTTIvrQARVGALIATHNLELANRMDRVFEMSDGLLVE 225
Cdd:PRK11176 498 DSPILILDEATSALDTESERAIQAALDEL--QKNRTSLVIAHRLSTIEKADEILVVEDGEIVE 558
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
24-224 |
1.34e-16 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 76.21 E-value: 1.34e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDDGKRTevrrRSVGFVYQfHHLLPEfs 103
Cdd:PRK11231 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA----RRLALLPQ-HHLTPE-- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 104 aleNIVLPQMIN-------------GVAKRTARERALELLRMVGLeprAGHRPARLSGGEQQRVAIARALANGPGLLIAD 170
Cdd:PRK11231 90 ---GITVRELVAygrspwlslwgrlSAEDNARVNQAMEQTRINHL---ADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLD 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1840515274 171 EPTGNLD-PHTAEgvfamLTTIVRQARV-GALIAT--HNLELANRM-DRVFEMSDGLLV 224
Cdd:PRK11231 164 EPTTYLDiNHQVE-----LMRLMRELNTqGKTVVTvlHDLNQASRYcDHLVVLANGHVM 217
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
5-176 |
1.54e-16 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 77.91 E-value: 1.54e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 5 MLELSGIVRTFeqAGteLQVLRGAELTVHAGELVALVGPSGAGKSTLLHI-AGllerptagtVRIAGT-DVSALDDGKRT 82
Cdd:NF040905 1 ILEMRGITKTF--PG--VKALDDVNLSVREGEIHALCGENGAGKSTLMKVlSG---------VYPHGSyEGEILFDGEVC 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 83 EVR------RRSVGFVYQFHHLLPEFSALENIVLPqmiNGVAKR------TARERALELLRMVGLEPRAGHRPARLSGGE 150
Cdd:NF040905 68 RFKdirdseALGIVIIHQELALIPYLSIAENIFLG---NERAKRgvidwnETNRRARELLAKVGLDESPDTLVTDIGVGK 144
|
170 180
....*....|....*....|....*.
gi 1840515274 151 QQRVAIARALANGPGLLIADEPTGNL 176
Cdd:NF040905 145 QQLVEIAKALSKDVKLLILDEPTAAL 170
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
23-221 |
2.06e-16 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 73.25 E-value: 2.06e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLErPTAGTVRIAGTdvsalddgkrtevrrrsVGFVYqfhhllpe 101
Cdd:cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKlIAGELE-PDEGIVTWGST-----------------VKIGY-------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 102 fsalenivLPQmingvakrtareralellrmvglepraghrparLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTA 181
Cdd:cd03221 68 --------FEQ---------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESI 106
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1840515274 182 EGVFAMLT----TIvrqarvgaLIATHNLELANRM-DRVFEMSDG 221
Cdd:cd03221 107 EALEEALKeypgTV--------ILVSHDRYFLDQVaTKIIELEDG 143
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
24-225 |
2.35e-16 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 74.84 E-value: 2.35e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLErPTAGTVRIAGTDVSALDdgkrTEVRRRSVGFVYQFHHLLP-- 100
Cdd:cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLaLFRLVE-LSSGSILIDGVDISKIG----LHDLRSRISIIPQDPVLFSgt 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 101 ---------EFS------ALENIVLPQMINGVAKrtareralellrmvGLEPRAGHRPARLSGGEQQRVAIARALANGPG 165
Cdd:cd03244 94 irsnldpfgEYSdeelwqALERVGLKEFVESLPG--------------GLDTVVEEGGENLSVGQRQLLCLARALLRKSK 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 166 LLIADEPTGNLDPHTAEGVFAMLttivRQARVGALIAT--HNLELANRMDRVFEMSDGLLVE 225
Cdd:cd03244 160 ILVLDEATASVDPETDALIQKTI----REAFKDCTVLTiaHRLDTIIDSDRILVLDKGRVVE 217
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
32-204 |
3.92e-16 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 74.11 E-value: 3.92e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 32 VHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDdgkrtevRRRSVGFVYQFHHLLPEFSALENIvlp 111
Cdd:PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD-------RSRFMAYLGHLPGLKADLSTLENL--- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 112 QMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTI 191
Cdd:PRK13543 104 HFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAH 183
|
170
....*....|...
gi 1840515274 192 VRqARVGALIATH 204
Cdd:PRK13543 184 LR-GGGAALVTTH 195
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
23-221 |
7.98e-16 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 75.93 E-value: 7.98e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGlLERPTAGTVRIAGTDVSalDDGKRTEVRRRsVGFVYQF--HHLL 99
Cdd:NF033858 15 VALDDVSLDIPAGCMVGLIGPDGVGKSSLLSlIAG-ARKIQQGRVEVLGGDMA--DARHRRAVCPR-IAYMPQGlgKNLY 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 100 PEFSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAgHRPA-RLSGGEQQRVAIARALANGPGLLIADEPTGNLDP 178
Cdd:NF033858 91 PTLSVFENLDFFGRLFGQDAAERRRRIDELLRATGLAPFA-DRPAgKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDP 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1840515274 179 hTAEGVFAMLTTIVRQARVG--ALIATHNLELANRMDRVFEMSDG 221
Cdd:NF033858 170 -LSRRQFWELIDRIRAERPGmsVLVATAYMEEAERFDWLVAMDAG 213
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
23-225 |
1.09e-15 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 73.56 E-value: 1.09e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLE-RPTAGTVRIAGTDVSALDdgkrTEVR-RRSVGFVYQFHhll 99
Cdd:COG0396 14 EILKGVNLTIKPGEVHAIMGPNGSGKSTLAKvLMGHPKyEVTSGSILLDGEDILELS----PDERaRAGIFLAFQYP--- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 100 PEF----------SALENIVLPQMingvAKRTARERALELLRMVGLEPRAGHRP--ARLSGGEQQRVAIARALANGPGLL 167
Cdd:COG0396 87 VEIpgvsvsnflrTALNARRGEEL----SAREFLKLLKEKMKELGLDEDFLDRYvnEGFSGGEKKRNEILQMLLLEPKLA 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1840515274 168 IADEPTGNLDPHT----AEGVFAMlttivRQARVGALIATHNLELANRM--DRVFEMSDGLLVE 225
Cdd:COG0396 163 ILDETDSGLDIDAlrivAEGVNKL-----RSPDRGILIITHYQRILDYIkpDFVHVLVDGRIVK 221
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
6-223 |
5.09e-15 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 73.16 E-value: 5.09e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFEQAGTELQV-------LRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDD 78
Cdd:PRK15439 253 LELPGNRRQQAAGAPVLTVedltgegFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALST 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 79 GKRTEVrrrsvGFVY-----QFHHLLPEFSALENIV-LPQMINGVAKRTARERA-LE-LLRMVGLEPRAGHRPAR-LSGG 149
Cdd:PRK15439 333 AQRLAR-----GLVYlpedrQSSGLYLDAPLAWNVCaLTHNRRGFWIKPARENAvLErYRRALNIKFNHAEQAARtLSGG 407
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1840515274 150 EQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQaRVGALIATHNLELANRM-DRVFEMSDGLL 223
Cdd:PRK15439 408 NQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMaDRVLVMHQGEI 481
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
14-211 |
6.90e-15 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 71.74 E-value: 6.90e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 14 TFEQAGTELqvLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALDdgkrtevrrrSVGFVY 93
Cdd:PRK10575 18 SFRVPGRTL--LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWS----------SKAFAR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 94 QFHHLLPEFSALENIVLPQMIN----------GVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANG 163
Cdd:PRK10575 86 KVAYLPQQLPAAEGMTVRELVAigrypwhgalGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQD 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1840515274 164 PGLLIADEPTGNLD-PHTAEgVFAMLTTIVRQARVGALIATHNLELANR 211
Cdd:PRK10575 166 SRCLLLDEPTSALDiAHQVD-VLALVHRLSQERGLTVIAVLHDINMAAR 213
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
24-226 |
1.27e-14 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 71.01 E-value: 1.27e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLERPTA-------GTVRIAGTDVSALDdgKRTEVRRRSVgfVYQF 95
Cdd:PRK13547 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKaLAGDLTGGGAprgarvtGDVTLNGEPLAAID--APRLARLRAV--LPQA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 96 HHLLPEFSALENIVLPQMIN----GVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALAN--------- 162
Cdd:PRK13547 92 AQPAFAFSAREIVLLGRYPHarraGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQlwpphdaaq 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1840515274 163 GPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANR-MDRVFEMSDGLLVEH 226
Cdd:PRK13547 172 PPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARhADRIAMLADGAIVAH 236
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
30-215 |
1.31e-14 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 72.46 E-value: 1.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 30 LTVHAGELVALVGPSGAGKSTLLHI-AGLLErPTAGTVRIAGTDVsaldDGKRTEVRRRsVGFVYQFHHLLPEFSALENI 108
Cdd:NF033858 287 FRIRRGEIFGFLGSNGCGKSTTMKMlTGLLP-ASEGEAWLFGQPV----DAGDIATRRR-VGYMSQAFSLYGELTVRQNL 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 109 VLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAML 188
Cdd:NF033858 361 ELHARLFHLPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVARDMFWRLL 440
|
170 180
....*....|....*....|....*..
gi 1840515274 189 TTIVRQARVGALIATHNLELANRMDRV 215
Cdd:NF033858 441 IELSREDGVTIFISTHFMNEAERCDRI 467
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
24-226 |
1.92e-14 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 71.67 E-value: 1.92e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLlhiAGLLE---RPTAGTVRIAGTDVSALDDGkrteVRRRSVGFVYQFHHLLP 100
Cdd:PRK10790 356 VLQNINLSVPSRGFVALVGHTGSGKSTL---ASLLMgyyPLTEGEIRLDGRPLSSLSHS----VLRQGVAMVQQDPVVLA 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 101 EfSALENIVLPQMINGVAKRTARERA--LELLRMV--GLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNL 176
Cdd:PRK10790 429 D-TFLANVTLGRDISEEQVWQALETVqlAELARSLpdGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANI 507
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1840515274 177 DPHTAEGVFAMLTTIVRQarvgaliaTHNLELANRMDRVFEmSDGLLVEH 226
Cdd:PRK10790 508 DSGTEQAIQQALAAVREH--------TTLVVIAHRLSTIVE-ADTILVLH 548
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
23-208 |
3.79e-14 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 69.37 E-value: 3.79e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVriagtdvsalddgKRTEVRRrsVGFVYQFHHL---L 99
Cdd:PRK09544 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-------------KRNGKLR--IGYVPQKLYLdttL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 100 P----EFSALENIVLPQMINGVAKRTARERALEllrmvglepragHRPARLSGGEQQRVAIARALANGPGLLIADEPTGN 175
Cdd:PRK09544 83 PltvnRFLRLRPGTKKEDILPALKRVQAGHLID------------APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQG 150
|
170 180 190
....*....|....*....|....*....|...
gi 1840515274 176 LDPHTAEGVFAMLTTIVRQARVGALIATHNLEL 208
Cdd:PRK09544 151 VDVNGQVALYDLIDQLRRELDCAVLMVSHDLHL 183
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
18-196 |
7.73e-14 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 67.27 E-value: 7.73e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 18 AGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIagLLERPTAGTVriagTDVSALDDGKRTEVRRRSVGFVYQFHH 97
Cdd:cd03232 16 KGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDV--LAGRKTAGVI----TGEILINGRPLDKNFQRSTGYVEQQDV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 98 LLPEFsalenivlpqmingvakrTARErALE---LLRMVGLEPRaghrparlsggeqQRVAIARALANGPGLLIADEPTG 174
Cdd:cd03232 90 HSPNL------------------TVRE-ALRfsaLLRGLSVEQR-------------KRLTIGVELAAKPSILFLDEPTS 137
|
170 180
....*....|....*....|..
gi 1840515274 175 NLDPHTAEGVFAMLTTIVRQAR 196
Cdd:cd03232 138 GLDSQAAYNIVRFLKKLADSGQ 159
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
6-212 |
9.62e-14 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 69.38 E-value: 9.62e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFeqagTELQVLRGAELTVHAGELVALVGPSGAGK---STLLHIAGllerPTAGTVRIAGTDVSAlddgkRT 82
Cdd:NF000106 14 VEVRGLVKHF----GEVKAVDGVDLDVREGTVLGVLGP*GAA**rgALPAHV*G----PDAGRRPWRF*TWCA-----NR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 83 EVRRRSVGFVYQFHHLLPE-FSALENIVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALA 161
Cdd:NF000106 81 RALRRTIG*HRPVR*GRREsFSGRENLYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMI 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1840515274 162 NGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVgALIATHNLELANRM 212
Cdd:NF000106 161 GRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRDGAT-VLLTTQYMEEAEQL 210
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
25-182 |
1.21e-13 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 69.21 E-value: 1.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 25 LRGAELTVHAGELVALVGPSGAGKSTLLHIagllerptagtvrIAGtDVsALDDGK---RTEVR---------RRSVGFV 92
Cdd:PRK11147 19 LDNAELHIEDNERVCLVGRNGAGKSTLMKI-------------LNG-EV-LLDDGRiiyEQDLIvarlqqdppRNVEGTV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 93 YQF--------HHLLPEFSALENIVL----PQMINGVAKRTAR----------ERALELLRMVGLEPRAghRPARLSGGE 150
Cdd:PRK11147 84 YDFvaegieeqAEYLKRYHDISHLVEtdpsEKNLNELAKLQEQldhhnlwqleNRINEVLAQLGLDPDA--ALSSLSGGW 161
|
170 180 190
....*....|....*....|....*....|..
gi 1840515274 151 QQRVAIARALANGPGLLIADEPTGNLDPHTAE 182
Cdd:PRK11147 162 LRKAALGRALVSNPDVLLLDEPTNHLDIETIE 193
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
23-228 |
1.23e-13 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 67.05 E-value: 1.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTL-LHIAGLLErPTAGTVRIAGTDVSALDDGKRtevrRRSVGFVYQFhhllpe 101
Cdd:cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLiLALFRFLE-AEEGKIEIDGIDISTIPLEDL----RSSLTIIPQD------ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 102 fsalenivlPQMINGVAK-------RTARERALELLRMVGleprAGhrpARLSGGEQQRVAIARALANGPGLLIADEPTG 174
Cdd:cd03369 91 ---------PTLFSGTIRsnldpfdEYSDEEIYGALRVSE----GG---LNLSQGQRQLLCLARALLKRPRVLVLDEATA 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 175 NLDPHTAegvfAMLTTIVRQARVGALIAT--HNLELANRMDRVFEMSDGLLVEHAR 228
Cdd:cd03369 155 SIDYATD----ALIQKTIREEFTNSTILTiaHRLRTIIDYDKILVMDAGEVKEYDH 206
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
19-221 |
1.25e-13 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 67.36 E-value: 1.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 19 GTELQVLRGAELTVHAGELVALVGPSGAGKSTLLhIAGLLERPT-AGTVRIAGTDVSALDDGKRTEVRRRSVGFVYQFHH 97
Cdd:cd03290 11 GSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLL-LAILGEMQTlEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPW 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 98 LLpEFSALENIVL-----PQMINGVAKRTARERALELLRMvGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEP 172
Cdd:cd03290 90 LL-NATVEENITFgspfnKQRYKAVTDACSLQPDIDLLPF-GDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDP 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1840515274 173 TGNLDPHTA-----EGVFAMLttivRQARVGALIATHNLELANRMDRVFEMSDG 221
Cdd:cd03290 168 FSALDIHLSdhlmqEGILKFL----QDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
1-206 |
1.25e-13 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 68.37 E-value: 1.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIVRTFEQAGTelqVLRGAELTVHAGELVALVGPSGAGKSTLLhiaglleRPTAGTVRIAGTDVSALDDGK 80
Cdd:PRK15056 2 MQQAGIVVNDVTVTWRNGHT---ALRDASFTVPGGSIAALVGVNGSGKSTLF-------KALMGFVRLASGKISILGQPT 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 81 RTEVRRRSVGFVYQFHHLLPEFSAL-ENIVLPQMINGV-----AKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRV 154
Cdd:PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLvEDVVMMGRYGHMgwlrrAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRV 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 155 AIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVgALIATHNL 206
Cdd:PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKT-MLVSTHNL 202
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
3-225 |
3.95e-13 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 66.74 E-value: 3.95e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 3 EPMLELSGIVRTFE-QAG----TELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLErPTAGTVRIAGTDVSAL 76
Cdd:PRK15112 2 ETLLEVRNLSKTFRyRTGwfrrQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKmLAGMIE-PTSGELLIDDHPLHFG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 77 DDGKRTEvRRRSVgFVYQFHHLLPEFSALENIVLPQMINGVAKRTARERAL-ELLRMVGLEP-RAGHRPARLSGGEQQRV 154
Cdd:PRK15112 81 DYSYRSQ-RIRMI-FQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIiETLRQVGLLPdHASYYPHMLAPGQKQRL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 155 AIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRM-DRVFEMSDGLLVE 225
Cdd:PRK15112 159 GLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHIsDQVLVMHQGEVVE 230
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
37-219 |
8.82e-13 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 64.55 E-value: 8.82e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 37 LVALVGPSGAGKSTLLH-----IAGLLERPTAGTVR----IAGTDVSA-------LDDGKRTEVRRrsvgfvyqfhhllp 100
Cdd:cd03240 24 LTLIVGQNGAGKTTIIEalkyaLTGELPPNSKGGAHdpklIREGEVRAqvklafeNANGKKYTITR-------------- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 101 EFSALENIV-LPQmingvakrtaRERALELLRMVGlepraghrpaRLSGGEQQ------RVAIARALANGPGLLIADEPT 173
Cdd:cd03240 90 SLAILENVIfCHQ----------GESNWPLLDMRG----------RCSGGEKVlasliiRLALAETFGSNCGILALDEPT 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1840515274 174 GNLDPHTAEGVFAMLTTIVRQARVGALIA-THNLELANRMDRVFEMS 219
Cdd:cd03240 150 TNLDEENIEESLAEIIEERKSQKNFQLIViTHDEELVDAADHIYRVE 196
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
20-225 |
8.98e-13 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 66.92 E-value: 8.98e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 20 TELQVLRGAELTVHAGELVALVGPSGAGKSTLLHiAGLLERPTAGTVRIagtdvsalddgkrteVRRRSVGFVYQFHHLl 99
Cdd:PLN03232 628 TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLIS-AMLGELSHAETSSV---------------VIRGSVAYVPQVSWI- 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 100 peFSAL--ENIVL-----PQMINGVAKRTARERALELLRMVGLEpRAGHRPARLSGGEQQRVAIARALANGPGLLIADEP 172
Cdd:PLN03232 691 --FNATvrENILFgsdfeSERYWRAIDVTALQHDLDLLPGRDLT-EIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDP 767
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1840515274 173 TGNLDPHTAEGVFAMLTTIVRQARVGALIaTHNLELANRMDRVFEMSDGLLVE 225
Cdd:PLN03232 768 LSALDAHVAHQVFDSCMKDELKGKTRVLV-TNQLHFLPLMDRIILVSEGMIKE 819
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
14-225 |
1.66e-12 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 66.12 E-value: 1.66e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 14 TFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLERpTAGTVRIAGtdvsalddgkrtevrrrSVGFV 92
Cdd:TIGR00957 643 TFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSaLLAEMDK-VEGHVHMKG-----------------SVAYV 704
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 93 YQfHHLLPEFSALENIVL-----PQMINGVAKRTARERALELLRMvGLEPRAGHRPARLSGGEQQRVAIARALANGPGLL 167
Cdd:TIGR00957 705 PQ-QAWIQNDSLRENILFgkalnEKYYQQVLEACALLPDLEILPS-GDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 782
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1840515274 168 IADEPTGNLDPHTAEGVF-------AMLTTIVRqarvgaLIATHNLELANRMDRVFEMSDGLLVE 225
Cdd:TIGR00957 783 LFDDPLSAVDAHVGKHIFehvigpeGVLKNKTR------ILVTHGISYLPQVDVIIVMSGGKISE 841
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
32-207 |
3.71e-12 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 65.42 E-value: 3.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 32 VHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAG----TDVSALddgkrtevrRRSVGFVYQFHHLLPEFSALEN 107
Cdd:TIGR01257 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGksilTNISDV---------HQNMGYCPQFDAIDDLLTGREH 2032
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 108 IVLPQMINGVAKRTARERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAM 187
Cdd:TIGR01257 2033 LYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNT 2112
|
170 180
....*....|....*....|
gi 1840515274 188 LTTIVRQARvGALIATHNLE 207
Cdd:TIGR01257 2113 IVSIIREGR-AVVLTSHSME 2131
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
11-221 |
9.30e-12 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 61.89 E-value: 9.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 11 IVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLL-HIAGLLErptaGTVRIAGtDVS--ALDDGKRTEVRRR 87
Cdd:cd03233 9 ISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLkALANRTE----GNVSVEG-DIHynGIPYKEFAEKYPG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 88 SVGFVYQFHHLLPEFSALENIvlpqmingvakrtarERALELLrmvglepraGHRPAR-LSGGEQQRVAIARALANGPGL 166
Cdd:cd03233 84 EIIYVSEEDVHFPTLTVRETL---------------DFALRCK---------GNEFVRgISGGERKRVSIAEALVSRASV 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1840515274 167 LIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATH--NLELANRMDRVFEMSDG 221
Cdd:cd03233 140 LCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYqaSDEIYDLFDKVLVLYEG 196
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
30-225 |
1.05e-11 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 63.99 E-value: 1.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 30 LTVHAGELVALVGPSGAGKSTLLHiAGLLERPTagtvrIAGTDVsalddgkrteVRRRSVGFVYQFHHLlpeFSAL--EN 107
Cdd:PLN03130 638 LDVPVGSLVAIVGSTGEGKTSLIS-AMLGELPP-----RSDASV----------VIRGTVAYVPQVSWI---FNATvrDN 698
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 108 IVL-----PQMINGVAKRTARERALELLRMvGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAE 182
Cdd:PLN03130 699 ILFgspfdPERYERAIDVTALQHDLDLLPG-GDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGR 777
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1840515274 183 GVF--AMLTTIVRQARVgalIATHNLELANRMDRVFEMSDGLLVE 225
Cdd:PLN03130 778 QVFdkCIKDELRGKTRV---LVTNQLHFLSQVDRIILVHEGMIKE 819
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
30-225 |
1.19e-11 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 63.45 E-value: 1.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 30 LTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSAlddGKRTEVRRR-SVGF--VYQFHHLL-PE-FSA 104
Cdd:PRK10522 344 LTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTA---EQPEDYRKLfSAVFtdFHLFDQLLgPEgKPA 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 105 LENIVlpqmingvakrtarERALELLRMVGLEPRAGHRPA--RLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAE 182
Cdd:PRK10522 421 NPALV--------------EKWLERLKMAHKLELEDGRISnlKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRR 486
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1840515274 183 GVFAMLTTIVRQARVGALIATHNLELANRMDRVFEMSDGLLVE 225
Cdd:PRK10522 487 EFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
31-180 |
1.80e-11 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 63.03 E-value: 1.80e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 31 TVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTdvsalddgkrteVRrrsVGFVYQFH-HLLPEFSALENIV 109
Cdd:TIGR03719 344 KLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEIGET------------VK---LAYVDQSRdALDPNKTVWEEIS 408
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1840515274 110 LPQMINGVAKRTARERAlellrMVGL--------EPRAGhrpaRLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHT 180
Cdd:TIGR03719 409 GGLDIIKLGKREIPSRA-----YVGRfnfkgsdqQKKVG----QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
31-182 |
2.85e-11 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 62.28 E-value: 2.85e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 31 TVHAGELVALVGPSGAGKSTLLHIagLLE--RPTAGTVRIaGTDVS-ALDDGKRTEvrrrsvgfvyqfhhLLPEFSALEN 107
Cdd:PRK11147 341 QVQRGDKIALIGPNGCGKTTLLKL--MLGqlQADSGRIHC-GTKLEvAYFDQHRAE--------------LDPEKTVMDN 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 108 IVLPQ---MINGvakrtaRER-ALELLRMVGLEPRAGHRPAR-LSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAE 182
Cdd:PRK11147 404 LAEGKqevMVNG------RPRhVLGYLQDFLFHPKRAMTPVKaLSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLE 477
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
35-177 |
3.70e-11 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 60.88 E-value: 3.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 35 GELVALVGPSGAGKSTLLH-IAGLLErPTAGTVRIAGTDVSAlddgKRTEVRRRSVGFVYQF-HHLLPEFSALenivlPQ 112
Cdd:cd03237 25 SEVIGILGPNGIGKTTFIKmLAGVLK-PDEGDIEIELDTVSY----KPQYIKADYEGTVRDLlSSITKDFYTH-----PY 94
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1840515274 113 MINGVAKRTARERALEllRMVglepraghrpARLSGGEQQRVAIARALANGPGLLIADEPTGNLD 177
Cdd:cd03237 95 FKTEIAKPLQIEQILD--REV----------PELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
12-200 |
5.72e-11 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 61.65 E-value: 5.72e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 12 VRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLhiaGLLERP---TAGTVRIAGTDVSALddgkRTEVRRRS 88
Cdd:PRK10789 318 IRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLL---SLIQRHfdvSEGDIRFHDIPLTKL----QLDSWRSR 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 89 VGFVYQFHHLLPEfSALENIVL------PQMINGVAK-RTARERALELLRmvGLEPRAGHRPARLSGGEQQRVAIARALA 161
Cdd:PRK10789 391 LAVVSQTPFLFSD-TVANNIALgrpdatQQEIEHVARlASVHDDILRLPQ--GYDTEVGERGVMLSGGQKQRISIARALL 467
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1840515274 162 NGPGLLIADEPTGNLDPHTAEGVFAML-------TTIVRQARVGAL 200
Cdd:PRK10789 468 LNAEILILDDALSAVDGRTEHQILHNLrqwgegrTVIISAHRLSAL 513
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
14-181 |
7.57e-11 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 61.28 E-value: 7.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 14 TFEQ--AGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLHIagLLERPTAGTVriagTDVSALDDG-KRTEVRRRSVG 90
Cdd:TIGR00956 766 TYEVkiKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNV--LAERVTTGVI----TGGDRLVNGrPLDSSFQRSIG 839
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 91 FVYQFHHLLPE--------FSALenIVLPQMINGVAKRTARERALELLRM-------VGLePRAGhrparLSGGEQQRVA 155
Cdd:TIGR00956 840 YVQQQDLHLPTstvreslrFSAY--LRQPKSVSKSEKMEYVEEVIKLLEMesyadavVGV-PGEG-----LNVEQRKRLT 911
|
170 180
....*....|....*....|....*..
gi 1840515274 156 IARALANGPGLLI-ADEPTGNLDPHTA 181
Cdd:TIGR00956 912 IGVELVAKPKLLLfLDEPTSGLDSQTA 938
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
2-177 |
1.48e-10 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 60.21 E-value: 1.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 2 SEPMLELSGIVRTFEqaGTELQVLRGaelTVHAGELVALVGPSGAGKSTLLHI-AGLLErPTAGTVRIAgTDVSAlddgK 80
Cdd:PRK13409 337 RETLVEYPDLTKKLG--DFSLEVEGG---EIYEGEVIGIVGPNGIGKTTFAKLlAGVLK-PDEGEVDPE-LKISY----K 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 81 RTEVRRRSVGFVYQFhhllpefsaLENIvlPQMINGVAKRTareralELLRMVGLEPRAGHRPARLSGGEQQRVAIARAL 160
Cdd:PRK13409 406 PQYIKPDYDGTVEDL---------LRSI--TDDLGSSYYKS------EIIKPLQLERLLDKNVKDLSGGELQRVAIAACL 468
|
170
....*....|....*..
gi 1840515274 161 ANGPGLLIADEPTGNLD 177
Cdd:PRK13409 469 SRDADLYLLDEPSAHLD 485
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
16-181 |
3.49e-10 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 59.47 E-value: 3.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 16 EQAGTE--LQVLRGAELTVHAGELVALVGPSGAGKSTLLHIagLLERPTA----GTVRIAGTDvsalddgKRTEVRRRSV 89
Cdd:PLN03140 885 EQGVTEdrLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGgyieGDIRISGFP-------KKQETFARIS 955
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 90 GFVYQFHHLLPEFSALENIV------LPQMINGVAKRTARERALELLRM-------VGLEPRAGhrparLSGGEQQRVAI 156
Cdd:PLN03140 956 GYCEQNDIHSPQVTVRESLIysaflrLPKEVSKEEKMMFVDEVMELVELdnlkdaiVGLPGVTG-----LSTEQRKRLTI 1030
|
170 180
....*....|....*....|....*
gi 1840515274 157 ARALANGPGLLIADEPTGNLDPHTA 181
Cdd:PLN03140 1031 AVELVANPSIIFMDEPTSGLDARAA 1055
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
1-224 |
6.55e-10 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 58.26 E-value: 6.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLELSGIVRTFEqaGTELQVLRGaelTVHAGELVALVGPSGAGKSTLLHI-AGLLErPTAGTVrIAGTDVSAlddg 79
Cdd:COG1245 337 EEETLVEYPDLTKSYG--GFSLEVEGG---EIREGEVLGIVGPNGIGKTTFAKIlAGVLK-PDEGEV-DEDLKISY---- 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 80 KRTEVRRRSVGFVYQFhhllpefsaLENiVLPQMINGVAKRTareralELLRMVGLEPRAGHRPARLSGGEQQRVAIARA 159
Cdd:COG1245 406 KPQYISPDYDGTVEEF---------LRS-ANTDDFGSSYYKT------EIIKPLGLEKLLDKNVKDLSGGELQRVAIAAC 469
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1840515274 160 LANGPGLLIADEPTGNLDphtAEGVFAMLTTIVRQAR---VGALIATHNLELanrMDRVfemSDGLLV 224
Cdd:COG1245 470 LSRDADLYLLDEPSAHLD---VEQRLAVAKAIRRFAEnrgKTAMVVDHDIYL---IDYI---SDRLMV 528
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
26-225 |
7.31e-10 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 58.26 E-value: 7.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 26 RGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDV---SALDDGKR-----TEVRRRSvGFvyqfhh 97
Cdd:PRK09700 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDIsprSPLDAVKKgmayiTESRRDN-GF------ 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 98 lLPEFSALENI-VLPQMING------------VAKRTA-RERALELLRMVGLEPRAGHrparLSGGEQQRVAIARALANG 163
Cdd:PRK09700 353 -FPNFSIAQNMaISRSLKDGgykgamglfhevDEQRTAeNQRELLALKCHSVNQNITE----LSGGNQQKVLISKWLCCC 427
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 164 PGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRMDRVFEMSDGLLVE 225
Cdd:PRK09700 428 PEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
31-177 |
9.70e-10 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 57.90 E-value: 9.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 31 TVHAGELVALVGPSGAGKSTLLHI-AGLLeRPTAGTVRiagtdvsalDDGKRTEVRRRSVGFVYQFHhllpeFSALEN-- 107
Cdd:PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKIlSGEL-IPNLGDYE---------EEPSWDEVLKRFRGTELQNY-----FKKLYNge 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 108 ---IVLPQMINGVAKR---TARE---------RALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEP 172
Cdd:PRK13409 160 ikvVHKPQYVDLIPKVfkgKVREllkkvdergKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEP 239
|
....*
gi 1840515274 173 TGNLD 177
Cdd:PRK13409 240 TSYLD 244
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
19-221 |
1.53e-09 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 57.43 E-value: 1.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 19 GTELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLE---RPTAGTVRIAGTDVSALDDGKRTEVrrrsvgfVY- 93
Cdd:TIGR00956 71 TKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKtIASNTDgfhIGVEGVITYDGITPEEIKKHYRGDV-------VYn 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 94 -----QFHHLLP----EFSALenIVLPQM-INGVAKRTARERALEL-LRMVGL----EPRAGHRPAR-LSGGEQQRVAIA 157
Cdd:TIGR00956 144 aetdvHFPHLTVgetlDFAAR--CKTPQNrPDGVSREEYAKHIADVyMATYGLshtrNTKVGNDFVRgVSGGERKRVSIA 221
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 158 RALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNL--ELANRMDRVFEMSDG 221
Cdd:TIGR00956 222 EASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCsqDAYELFDKVIVLYEG 287
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
35-177 |
1.93e-09 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 57.10 E-value: 1.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 35 GELVALVGPSGAGKSTLLHI-AGLLeRPTAGTVRiagtdvsalDDGKRTEVRRRSVGFVYQFHhllpeFSALEN-----I 108
Cdd:COG1245 99 GKVTGILGPNGIGKSTALKIlSGEL-KPNLGDYD---------EEPSWDEVLKRFRGTELQDY-----FKKLANgeikvA 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 109 VLPQMINGVAKR---TARE---------RALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNL 176
Cdd:COG1245 164 HKPQYVDLIPKVfkgTVREllekvdergKLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSSYL 243
|
.
gi 1840515274 177 D 177
Cdd:COG1245 244 D 244
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
31-180 |
3.98e-09 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 55.90 E-value: 3.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 31 TVHAGELVALVGPSGAGKSTLLH-IAGlLERPTAGTVRIAGTdvsalddgkrteVRrrsVGFVYQFH-HLLPEFSALENI 108
Cdd:PRK11819 346 SLPPGGIVGIIGPNGAGKSTLFKmITG-QEQPDSGTIKIGET------------VK---LAYVDQSRdALDPNKTVWEEI 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 109 VLPQMINGVAKRTARERAlellrMVGL--------EPRAGHrparLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHT 180
Cdd:PRK11819 410 SGGLDIIKVGNREIPSRA-----YVGRfnfkggdqQKKVGV----LSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVET 480
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
24-221 |
4.05e-09 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 55.25 E-value: 4.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLErPTAGTVRIAGtdvsalddgkrtevrrrSVGFVYQFHHLLPEf 102
Cdd:cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMlILGELE-PSEGKIKHSG-----------------RISFSSQFSWIMPG- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 103 SALENIVLpqminGVAKRTARERAleLLRMVGLEPRAGHRPAR-----------LSGGEQQRVAIARALANGPGLLIADE 171
Cdd:cd03291 113 TIKENIIF-----GVSYDEYRYKS--VVKACQLEEDITKFPEKdntvlgeggitLSGGQRARISLARAVYKDADLYLLDS 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 172 PTGNLDPHTAEGVF--AMLTTIVRQARVgalIATHNLELANRMDRVFEMSDG 221
Cdd:cd03291 186 PFGYLDVFTEKEIFesCVCKLMANKTRI---LVTSKMEHLKKADKILILHEG 234
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
24-221 |
4.78e-09 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 56.07 E-value: 4.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLErPTAGTVRIAGtdvsalddgkrtevrrrSVGFVYQFHHLLPEf 102
Cdd:TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMmIMGELE-PSEGKIKHSG-----------------RISFSPQTSWIMPG- 501
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 103 SALENIVLpqminGVA----KRTARERALELLRMVGLEPRAGHRP-----ARLSGGEQQRVAIARALANGPGLLIADEPT 173
Cdd:TIGR01271 502 TIKDNIIF-----GLSydeyRYTSVIKACQLEEDIALFPEKDKTVlgeggITLSGGQRARISLARAVYKDADLYLLDSPF 576
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1840515274 174 GNLDPHTAEGVF--AMLTTIVRQARVgalIATHNLELANRMDRVFEMSDG 221
Cdd:TIGR01271 577 THLDVVTEKEIFesCLCKLMSNKTRI---LVTSKLEHLKKADKILLLHEG 623
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
23-184 |
6.57e-09 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 55.33 E-value: 6.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIA-GTDVS------ALDDGK--RTEV--------- 84
Cdd:TIGR03719 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEARPQpGIKVGylpqepQLDPTKtvRENVeegvaeikd 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 ---RRRSVGFVY-----QFHHLLPEFSALENIVlpQMINGVAKRTARERALELLRMvglePRAGHRPARLSGGEQQRVAI 156
Cdd:TIGR03719 99 aldRFNEISAKYaepdaDFDKLAAEQAELQEII--DAADAWDLDSQLEIAMDALRC----PPWDADVTKLSGGERRRVAL 172
|
170 180
....*....|....*....|....*...
gi 1840515274 157 ARALANGPGLLIADEPTGNLDphtAEGV 184
Cdd:TIGR03719 173 CRLLLSKPDMLLLDEPTNHLD---AESV 197
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-225 |
7.65e-09 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 54.26 E-value: 7.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 1 MSEPMLElsgiVRTFEQAGTELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGlleRP----TAGTVRIAGTDVSA 75
Cdd:CHL00131 3 KNKPILE----IKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKvIAG---HPaykiLEGDILFKGESILD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 76 LDDGKRTevrRRSV--GFVY--------------------QFHHLLPEFSALENIvlpQMINgvakrtareralELLRMV 133
Cdd:CHL00131 76 LEPEERA---HLGIflAFQYpieipgvsnadflrlaynskRKFQGLPELDPLEFL---EIIN------------EKLKLV 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 134 GLEPRAGHRPAR--LSGGEQQRVAIAR-ALANgPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARvGALIATHNLELAN 210
Cdd:CHL00131 138 GMDPSFLSRNVNegFSGGEKKRNEILQmALLD-SELAILDETDSGLDIDALKIIAEGINKLMTSEN-SIILITHYQRLLD 215
|
250
....*....|....*..
gi 1840515274 211 RM--DRVFEMSDGLLVE 225
Cdd:CHL00131 216 YIkpDYVHVMQNGKIIK 232
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
35-211 |
9.25e-09 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 54.22 E-value: 9.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 35 GELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALddgKRTEVRRRsVGFVYQfHHLLPEFSALENIV----L 110
Cdd:PRK10253 33 GHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHY---ASKEVARR-IGLLAQ-NATTPGDITVQELVargrY 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 111 PQMINGVAKRTARERAL-ELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLT 189
Cdd:PRK10253 108 PHQPLFTRWRKEDEEAVtKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLS 187
|
170 180
....*....|....*....|..
gi 1840515274 190 TIVRQARVGALIATHNLELANR 211
Cdd:PRK10253 188 ELNREKGYTLAAVLHDLNQACR 209
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
31-226 |
1.36e-08 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 54.24 E-value: 1.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 31 TVHAGELVALVGPSGAGKSTLLH-IAGLLERpTAGTVRIAGTDVS------ALDDGKR--TEVRRRSvgfvyqfhHLLPE 101
Cdd:PRK10762 274 TLRKGEILGVSGLMGAGRTELMKvLYGALPR-TSGYVTLDGHEVVtrspqdGLANGIVyiSEDRKRD--------GLVLG 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 102 FSALENIVLPQM---------INGVAKRTARERALELLRMVglEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEP 172
Cdd:PRK10762 345 MSVKENMSLTALryfsraggsLKHADEQQAVSDFIRLFNIK--TPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEP 422
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 173 TGNLDphtaegvfamlttivrqarVGA------LIATHNLE------LANRMDRVFEMSDGLLVEH 226
Cdd:PRK10762 423 TRGVD-------------------VGAkkeiyqLINQFKAEglsiilVSSEMPEVLGMSDRILVMH 469
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
40-184 |
1.75e-08 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 53.97 E-value: 1.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 40 LVGPSGAGKSTLLHI-AGLlERPTAGTVRIA-GTDVS------ALDDGK--RTEVRRrSVGFVYQ--------------- 94
Cdd:PRK11819 38 VLGLNGAGKSTLLRImAGV-DKEFEGEARPApGIKVGylpqepQLDPEKtvRENVEE-GVAEVKAaldrfneiyaayaep 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 95 ---FHHLLPEFSALENIVlpQMINGVAKRTARERALELLRMvglePRAGHRPARLSGGEQQRVAIARALANGPGLLIADE 171
Cdd:PRK11819 116 dadFDALAAEQGELQEII--DAADAWDLDSQLEIAMDALRC----PPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDE 189
|
170
....*....|...
gi 1840515274 172 PTGNLDphtAEGV 184
Cdd:PRK11819 190 PTNHLD---AESV 199
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
25-221 |
1.94e-08 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 52.33 E-value: 1.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 25 LRGAELTVHAGELVALVGPSGAGKSTLLHiagllerptagtvriagtdvsaldDGKRTEVRRRSVGFvyqfhhlLPEFSA 104
Cdd:cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVN------------------------EGLYASGKARLISF-------LPKFSR 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 105 LENIVLPQmingvakrtareraLELLRMVGLEPRAGHRPAR-LSGGEQQRVAIARALANGPG--LLIADEPTGNLDPHTA 181
Cdd:cd03238 60 NKLIFIDQ--------------LQFLIDVGLGYLTLGQKLStLSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQDI 125
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1840515274 182 EGVFAMLTTIVRQARVGALIaTHNLELANRMDRVFEMSDG 221
Cdd:cd03238 126 NQLLEVIKGLIDLGNTVILI-EHNLDVLSSADWIIDFGPG 164
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
146-208 |
2.27e-08 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 51.77 E-value: 2.27e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1840515274 146 LSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAML----TTIVRQARVGALIATHNLEL 208
Cdd:cd03223 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLkelgITVISVGHRPSLWKFHDRVL 158
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
31-177 |
2.65e-08 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 53.39 E-value: 2.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 31 TVHAGELVALVGPSGAGKSTLLH-IAGLLERPTAGTVRIAGTDVS------ALDDG--KRTEVRRRsvgfvyqfHHLLPE 101
Cdd:PRK13549 284 SLRRGEILGIAGLVGAGRTELVQcLFGAYPGRWEGEIFIDGKPVKirnpqqAIAQGiaMVPEDRKR--------DGIVPV 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 102 FSALENIVLP--------QMINGVAKRTARERALELLRMVGLEPRAghRPARLSGGEQQRVAIARALANGPGLLIADEPT 173
Cdd:PRK13549 356 MGVGKNITLAaldrftggSRIDDAAELKTILESIQRLKVKTASPEL--AIARLSGGNQQKAVLAKCLLLNPKILILDEPT 433
|
....
gi 1840515274 174 GNLD 177
Cdd:PRK13549 434 RGID 437
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
35-222 |
2.84e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 51.22 E-value: 2.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 35 GELVALVGPSGAGKSTLLH-IAGLLERPTAGTVRIAGtdvsalddgkrtevrrrsvgfvyqfhhllpefsalenivlpqm 113
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARaLARELGPPGGGVIYIDG------------------------------------------- 38
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 114 ingvakrtarERALELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIV- 192
Cdd:smart00382 39 ----------EDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLl 108
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1840515274 193 ----RQARVGALIATHN------LELANRMDRVFEMSDGL 222
Cdd:smart00382 109 lllkSEKNLTVILTTNDekdlgpALLRRRFDRRIVLLLIL 148
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
24-178 |
4.00e-08 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 53.09 E-value: 4.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGllERPTA--------GTVRIAGTDVSALddgkrtevrRRSVGFVYQ 94
Cdd:PRK10938 275 ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSlITG--DHPQGysndltlfGRRRGSGETIWDI---------KKHIGYVSS 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 95 FHHLLPEFSA-LENIVLPQMINGVAKRTA-----RERALELLRMVGLEPRAGHRPAR-LSGGEQQRVAIARALANGPGLL 167
Cdd:PRK10938 344 SLHLDYRVSTsVRNVILSGFFDSIGIYQAvsdrqQKLAQQWLDILGIDKRTADAPFHsLSWGQQRLALIVRALVKHPTLL 423
|
170
....*....|.
gi 1840515274 168 IADEPTGNLDP 178
Cdd:PRK10938 424 ILDEPLQGLDP 434
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
30-218 |
4.17e-08 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 51.21 E-value: 4.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 30 LTVHAGELVALVGPSGAGKSTLLhiagllerptagtvriagtdvsalddgkrtevrrRSVGFV--YQFHHLLPEFSALEN 107
Cdd:cd03227 16 VTFGEGSLTIITGPNGSGKSTIL----------------------------------DAIGLAlgGAQSATRRRSGVKAG 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 108 IVlpqmingvakRTARERALELLRMvglepraghrpaRLSGGEQQRVAIARALA----NGPGLLIADEPTGNLDPHTAEG 183
Cdd:cd03227 62 CI----------VAAVSAELIFTRL------------QLSGGEKELSALALILAlaslKPRPLYILDEIDRGLDPRDGQA 119
|
170 180 190
....*....|....*....|....*....|....*.
gi 1840515274 184 VFAMLT-TIVRQARVgaLIATHNLELANRMDRVFEM 218
Cdd:cd03227 120 LAEAILeHLVKGAQV--IVITHLPELAELADKLIHI 153
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
28-177 |
6.16e-08 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 52.22 E-value: 6.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 28 AELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIagtdvsaldDGKRTEVR--RRSV--GFVyqfhhLLPEFS 103
Cdd:PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYL---------DGKPIDIRspRDAIraGIM-----LCPEDR 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 104 ALENIV----LPQMINGVAKR------------TARERALELLRMVGLEPRAGHRPAR-LSGGEQQRVAIARALANGPGL 166
Cdd:PRK11288 338 KAEGIIpvhsVADNINISARRhhlragclinnrWEAENADRFIRSLNIKTPSREQLIMnLSGGNQQKAILGRWLSEDMKV 417
|
170
....*....|.
gi 1840515274 167 LIADEPTGNLD 177
Cdd:PRK11288 418 ILLDEPTRGID 428
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
24-225 |
8.32e-08 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 52.47 E-value: 8.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSALddGKRtEVRRrsvgfvyQFhHLLPEFS 103
Cdd:PTZ00243 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAY--GLR-ELRR-------QF-SMIPQDP 1393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 104 ALENIVLPQMINGVAKRTARE--RALELLRMV--------GLEPRAGHRPARLSGGEQQRVAIARA-LANGPGLLIADEP 172
Cdd:PTZ00243 1394 VLFDGTVRQNVDPFLEASSAEvwAALELVGLRervaseseGIDSRVLEGGSNYSVGQRQLMCMARAlLKKGSGFILMDEA 1473
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 173 TGNLDP-------HTAEGVFAMLTTIVrqarvgalIAtHNLELANRMDRVFEMSDGLLVE 225
Cdd:PTZ00243 1474 TANIDPaldrqiqATVMSAFSAYTVIT--------IA-HRLHTVAQYDKIIVMDHGAVAE 1524
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
23-204 |
1.20e-07 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 50.95 E-value: 1.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTL-LHIAGLLE-RPTAGTVRIAGTDVSALDDGKRTEvrrRSVGFVYQFHHLLP 100
Cdd:PRK09580 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLsATLAGREDyEVTGGTVEFKGKDLLELSPEDRAG---EGIFMAFQYPVEIP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 101 EFSalENIVLPQMINGVAKRTAR------------ERALELLRMvglepraghrPARL---------SGGEQQRVAIARA 159
Cdd:PRK09580 92 GVS--NQFFLQTALNAVRSYRGQepldrfdfqdlmEEKIALLKM----------PEDLltrsvnvgfSGGEKKRNDILQM 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1840515274 160 LANGPGLLIADEPTGNLDPH----TAEGVFAMlttivRQARVGALIATH 204
Cdd:PRK09580 160 AVLEPELCILDESDSGLDIDalkiVADGVNSL-----RDGKRSFIIVTH 203
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
34-213 |
1.25e-07 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 50.33 E-value: 1.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 34 AGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTDVSalddgKRTEVRRRSVGFVYQFHHLLPEFSALENIVLPQ 112
Cdd:PRK13540 26 AGGLLHLKGSNGAGKTTLLKlIAGLL-NPEKGEILFERQSIK-----KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDI 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 113 MINGVAKRTAreralELLRMVGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTiv 192
Cdd:PRK13540 100 HFSPGAVGIT-----ELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQE-- 172
|
170 180
....*....|....*....|..
gi 1840515274 193 RQARVGALIATHNLELA-NRMD 213
Cdd:PRK13540 173 HRAKGGAVLLTSHQDLPlNKAD 194
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
31-223 |
1.25e-07 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 51.36 E-value: 1.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 31 TVHAGELVALVGPSGAGKSTLLH-IAGLLERPTAGTVRIAGTDVSALDDGKRTEVRRRSVGFVYQFHHLLPEFSALENIV 109
Cdd:TIGR02633 282 SLRRGEILGVAGLVGAGRTELVQaLFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNIT 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 110 LpQMINGVAKRTARERALEL----LRMVGLEPRAGHrP----ARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTA 181
Cdd:TIGR02633 362 L-SVLKSFCFKMRIDAAAELqiigSAIQRLKVKTAS-PflpiGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAK 439
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1840515274 182 EGVFAMLTTIVRQARVGALIATHNLELANRMDRVFEMSDGLL 223
Cdd:TIGR02633 440 YEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
28-179 |
1.55e-07 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 51.40 E-value: 1.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 28 AELTVHAGELVALVGPSGAGKSTLLH------IAGLlerPTAGTV-----RIAGTDVSALD-----DGKRTEVRRRSVGF 91
Cdd:PLN03073 196 ASVTLAFGRHYGLVGRNGTGKTTFLRymamhaIDGI---PKNCQIlhveqEVVGDDTTALQcvlntDIERTQLLEEEAQL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 92 VYQFHHL----------LPEFSALENIVLPQMINGVAKR-------TARERALELLRMVGLEPRAGHRPAR-LSGGEQQR 153
Cdd:PLN03073 273 VAQQRELefetetgkgkGANKDGVDKDAVSQRLEEIYKRlelidayTAEARAASILAGLSFTPEMQVKATKtFSGGWRMR 352
|
170 180
....*....|....*....|....*.
gi 1840515274 154 VAIARALANGPGLLIADEPTGNLDPH 179
Cdd:PLN03073 353 IALARALFIEPDLLLLDEPTNHLDLH 378
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
6-177 |
1.61e-07 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 51.05 E-value: 1.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 6 LELSGIVRTFEqagtELQVLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLErPTAGTVriagtdvsalddgKRTEv 84
Cdd:PRK15064 320 LEVENLTKGFD----NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRtLVGELE-PDSGTV-------------KWSE- 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 85 rRRSVGFVYQFHHllPEFSALENIV-----------LPQMINGVakrtareraleLLRMVGLEPRAGHRPARLSGGEQQR 153
Cdd:PRK15064 381 -NANIGYYAQDHA--YDFENDLTLFdwmsqwrqegdDEQAVRGT-----------LGRLLFSQDDIKKSVKVLSGGEKGR 446
|
170 180
....*....|....*....|....
gi 1840515274 154 VAIARALANGPGLLIADEPTGNLD 177
Cdd:PRK15064 447 MLFGKLMMQKPNVLVMDEPTNHMD 470
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
22-177 |
2.63e-07 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 50.55 E-value: 2.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 22 LQVLRG-------AELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGT-------------DVSALD---D 78
Cdd:PRK10636 7 LQIRRGvrvlldnATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNwqlawvnqetpalPQPALEyviD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 79 GKRtevrrrsvgfvyQFHHLLPEFSALENI-------VLPQMINGVAKRTARERALELLRMVGLEPRAGHRPAR-LSGGE 150
Cdd:PRK10636 87 GDR------------EYRQLEAQLHDANERndghaiaTIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSdFSGGW 154
|
170 180
....*....|....*....|....*..
gi 1840515274 151 QQRVAIARALANGPGLLIADEPTGNLD 177
Cdd:PRK10636 155 RMRLNLAQALICRSDLLLLDEPTNHLD 181
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
38-221 |
5.68e-07 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 49.47 E-value: 5.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 38 VALVGPSGAGKSTLLH-IAGLLErPTAGTVRiagtdvsalddgKRTEVRRRsvgfVYQFHHLLP-EFSALENIVLPQMIN 115
Cdd:PLN03073 538 IAMVGPNGIGKSTILKlISGELQ-PSSGTVF------------RSAKVRMA----VFSQHHVDGlDLSSNPLLYMMRCFP 600
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 116 GVAKRTARERalelLRMVGLEPRAGHRPA-RLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLttIVRQ 194
Cdd:PLN03073 601 GVPEQKLRAH----LGSFGVTGNLALQPMyTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGL--VLFQ 674
|
170 180
....*....|....*....|....*...
gi 1840515274 195 ArvGALIATHNLEL-ANRMDRVFEMSDG 221
Cdd:PLN03073 675 G--GVLMVSHDEHLiSGSVDELWVVSEG 700
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
24-201 |
6.78e-07 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 49.52 E-value: 6.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLLHiAGLLERPTAGTVRIAGTDVSALDdgkrTEVRRRSVGfvyqfhhllpefs 103
Cdd:TIGR01271 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLS-ALLRLLSTEGEIQIDGVSWNSVT----LQTWRKAFG------------- 1295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 104 aleniVLPQMI---NGVAKRT----ARERALELLRM---VGLEPRAGHRPARL-----------SGGEQQRVAIARALAN 162
Cdd:TIGR01271 1296 -----VIPQKVfifSGTFRKNldpyEQWSDEEIWKVaeeVGLKSVIEQFPDKLdfvlvdggyvlSNGHKQLMCLARSILS 1370
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1840515274 163 GPGLLIADEPTGNLDP-------HTAEGVFAMLTTIVRQARVGALI 201
Cdd:TIGR01271 1371 KAKILLLDEPSAHLDPvtlqiirKTLKQSFSNCTVILSEHRVEALL 1416
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
146-215 |
8.45e-07 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 49.26 E-value: 8.45e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 146 LSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRMDRV 215
Cdd:PTZ00265 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKI 1428
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
24-221 |
9.48e-07 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 49.01 E-value: 9.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLLhiagllerptagtvriaGTDVSALDDGKRTEVRRRSVGFVYQFHHLLpEFS 103
Cdd:PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLL-----------------QSLLSQFEISEGRVWAERSIAYVPQQAWIM-NAT 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 104 ALENIVL-----PQMINGVAKRTARERALELLRMvGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDP 178
Cdd:PTZ00243 737 VRGNILFfdeedAARLADAVRVSQLEADLAQLGG-GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1840515274 179 HTAEgvfamltTIVRQARVGAL------IATHNLELANRMDRVFEMSDG 221
Cdd:PTZ00243 816 HVGE-------RVVEECFLGALagktrvLATHQVHVVPRADYVVALGDG 857
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
24-225 |
1.45e-06 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 48.40 E-value: 1.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTL-LHIAGLLErPTAGTVRIAGTDVS--ALDD--GKRTEVRRRSVGFVYQFHHL 98
Cdd:TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLtLGLFRINE-SAEGEIIIDGLNIAkiGLHDlrFKITIIPQDPVLFSGSLRMN 1379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 99 LPEFSAL--ENIVLpqmingvakrtarerALELLRM--------VGLEPRAGHRPARLSGGEQQRVAIARALANGPGLLI 168
Cdd:TIGR00957 1380 LDPFSQYsdEEVWW---------------ALELAHLktfvsalpDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILV 1444
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1840515274 169 ADEPTGNLDPHTAEGVFAMLTTIVRQARVgaLIATHNLELANRMDRVFEMSDGLLVE 225
Cdd:TIGR00957 1445 LDEATAAVDLETDNLIQSTIRTQFEDCTV--LTIAHRLNTIMDYTRVIVLDKGEVAE 1499
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
136-220 |
1.91e-06 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 48.10 E-value: 1.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 136 EPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRMDRV 215
Cdd:PTZ00265 570 ETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTI 649
|
....*
gi 1840515274 216 FEMSD 220
Cdd:PTZ00265 650 FVLSN 654
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
124-218 |
2.89e-06 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 47.70 E-value: 2.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 124 ERALELLRMVGLE-PRAGHRPARLSGGEQQRVAIARAL---ANGPGLLIADEPTGNLdpHTAEgVFAMLTTIVRQARVG- 198
Cdd:TIGR00630 807 SRKLQTLCDVGLGyIRLGQPATTLSGGEAQRIKLAKELskrSTGRTLYILDEPTTGL--HFDD-IKKLLEVLQRLVDKGn 883
|
90 100
....*....|....*....|.
gi 1840515274 199 -ALIATHNLELANRMDRVFEM 218
Cdd:TIGR00630 884 tVVVIEHNLDVIKTADYIIDL 904
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
125-218 |
3.37e-06 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 46.45 E-value: 3.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 125 RALELLRMVGLE-PRAGHRPARLSGGEQQRVAIARAL---ANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVgAL 200
Cdd:cd03271 148 RKLQTLCDVGLGyIKLGQPATTLSGGEAQRIKLAKELskrSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNT-VV 226
|
90
....*....|....*...
gi 1840515274 201 IATHNLELANRMDRVFEM 218
Cdd:cd03271 227 VIEHNLDVIKCADWIIDL 244
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
30-171 |
4.93e-06 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 46.71 E-value: 4.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 30 LTVHAGELVALVGPSGAGKSTLLH-IAGLLeRPTAGTVRIAGTdvsALDDGKRTEVRRR-SVGF--VYQFHHLLpefsal 105
Cdd:COG4615 353 LTIRRGELVFIVGGNGSGKSTLAKlLTGLY-RPESGEILLDGQ---PVTADNREAYRQLfSAVFsdFHLFDRLL------ 422
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1840515274 106 enivlpqminGVAKRTARERALELLRMVGLEpragHRPA---------RLSGGEQQRVAIARALANGPGLLIADE 171
Cdd:COG4615 423 ----------GLDGEADPARARELLERLELD----HKVSvedgrfsttDLSQGQRKRLALLVALLEDRPILVFDE 483
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
40-180 |
5.55e-06 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 46.42 E-value: 5.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 40 LVGPSGAGKSTLLHI-AGLLErPTAGTVriagtdvsALDDGKRtevrrrsVGFVYQFHHLLPEFSALENIV--------- 109
Cdd:PRK15064 32 LIGANGCGKSTFMKIlGGDLE-PSAGNV--------SLDPNER-------LGKLRQDQFAFEEFTVLDTVImghtelwev 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 110 ---------LPQMING----VAK----------RTARERALELLRMVGLEPRAGHRP-ARLSGGEQQRVAIARALANGPG 165
Cdd:PRK15064 96 kqerdriyaLPEMSEEdgmkVADlevkfaemdgYTAEARAGELLLGVGIPEEQHYGLmSEVAPGWKLRVLLAQALFSNPD 175
|
170
....*....|....*
gi 1840515274 166 LLIADEPTGNLDPHT 180
Cdd:PRK15064 176 ILLLDEPTNNLDINT 190
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
32-223 |
7.07e-06 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 46.26 E-value: 7.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 32 VHAGELVALVGPSGAGKSTLLH-IAGLLERpTAGTVRIAGTDVS------ALDDGKR--TEvRRRSVGFvyqFHHLLPEF 102
Cdd:PRK10982 271 LHKGEILGIAGLVGAKRTDIVEtLFGIREK-SAGTITLHGKKINnhnaneAINHGFAlvTE-ERRSTGI---YAYLDIGF 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 103 SALenivlpqmINGVAKRTARERALELLRM------VGLEPRA---GHRPA--RLSGGEQQRVAIARALANGPGLLIADE 171
Cdd:PRK10982 346 NSL--------ISNIRNYKNKVGLLDNSRMksdtqwVIDSMRVktpGHRTQigSLSGGNQQKVIIGRWLLTQPEILMLDE 417
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 172 PTGNLDPHTAEGVFAMLTTIVRQARVGALIATHNLELANRMDRVFEMSDGLL 223
Cdd:PRK10982 418 PTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLV 469
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
35-177 |
1.21e-05 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 45.05 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 35 GELVALVGPSGAGKSTLLHI-AGLLeRPTAGTVRiagtdvsalDDGKRTEVRRRSVGFVYQ--FHHLLPEfsALENIVLP 111
Cdd:cd03236 26 GQVLGLVGPNGIGKSTALKIlAGKL-KPNLGKFD---------DPPDWDEILDEFRGSELQnyFTKLLEG--DVKVIVKP 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1840515274 112 QMINGVAKrTARERALELLRMV-------------GLEPRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLD 177
Cdd:cd03236 94 QYVDLIPK-AVKGKVGELLKKKdergkldelvdqlELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
37-191 |
1.40e-05 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 44.23 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 37 LVALVGPSGAGKSTLLH-IAGLLERPTAGTVRIAGT-----------DVSALDDGKRTEVRRRsVGFVYQFHHLLPE--F 102
Cdd:COG0419 25 LNLIVGPNGAGKSTILEaIRYALYGKARSRSKLRSDlinvgseeasvELEFEHGGKRYRIERR-QGEFAEFLEAKPSerK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 103 SALENIVLPQMINGVAKRTAR-----ERALE------------LLRMVGLEPraghrPARLSGGEQQRVAIARALAngpg 165
Cdd:COG0419 104 EALKRLLGLEIYEELKERLKEleealESALEelaelqklkqeiLAQLSGLDP-----IETLSGGERLRLALADLLS---- 174
|
170 180
....*....|....*....|....*.
gi 1840515274 166 lLIADepTGNLDPHTAEGVFAMLTTI 191
Cdd:COG0419 175 -LILD--FGSLDEERLERLLDALEEL 197
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
23-201 |
2.81e-05 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 44.24 E-value: 2.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTL-LHIAGLLerptagtvriagtdvsALDDGKRTEvrrrsvgfvyQFHHL-LP 100
Cdd:PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALaRALAGEL----------------PLLSGERQS----------QFSHItRL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 101 EFSALENIVLPQ-------MINGVAK---RTARE----------RALELLRMVGLEPRAGHRPARLSGGEQQRVAIARAL 160
Cdd:PRK10938 71 SFEQLQKLVSDEwqrnntdMLSPGEDdtgRTTAEiiqdevkdpaRCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQAL 150
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1840515274 161 ANGPGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVGALI 201
Cdd:PRK10938 151 MSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLV 191
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
23-173 |
2.94e-05 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 44.40 E-value: 2.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 23 QVLRGAELTVHAGELVALVGPSGAGKSTL-LHIAG-LLERPTAGTVRIAGTDVS------ALDDGKR--TEvRRRSVGFV 92
Cdd:NF040905 274 KVVDDVSLNVRRGEIVGIAGLMGAGRTELaMSVFGrSYGRNISGTVFKDGKEVDvstvsdAIDAGLAyvTE-DRKGYGLN 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 93 yqfhhlLPEfSALENIVLPQMiNGVAKRTARERALEllRMVGLEPRAGHR---------PARLSGGEQQRVAIARALANG 163
Cdd:NF040905 353 ------LID-DIKRNITLANL-GKVSRRGVIDENEE--IKVAEEYRKKMNiktpsvfqkVGNLSGGNQQKVVLSKWLFTD 422
|
170
....*....|
gi 1840515274 164 PGLLIADEPT 173
Cdd:NF040905 423 PDVLILDEPT 432
|
|
| ABC_sbcCD |
cd03279 |
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are ... |
32-219 |
3.03e-05 |
|
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Pssm-ID: 213246 [Multi-domain] Cd Length: 213 Bit Score: 43.41 E-value: 3.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 32 VHAGELVALVGPSGAGKSTLLH-IAGLLerptAGTVRIAGtDVSALDDGKRTEVRRRSVGFVYQFHHLLPEFSALENIVL 110
Cdd:cd03279 25 LDNNGLFLICGPTGAGKSTILDaITYAL----YGKTPRYG-RQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGLDY 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 111 PQMINGVAKRTARERalELLRmvglepraghRPAR-LSGGEQQRVAIARALA---------NGP-GLLIADEPTGNLDPH 179
Cdd:cd03279 100 DQFTRIVLLPQGEFD--RFLA----------RPVStLSGGETFLASLSLALAlsevlqnrgGARlEALFIDEGFGTLDPE 167
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1840515274 180 TAEGVFAMLTTIVRQARVgALIATHNLELANRMDRVFEMS 219
Cdd:cd03279 168 ALEAVATALELIRTENRM-VGVISHVEELKERIPQRLEVI 206
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
25-221 |
3.22e-05 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 43.40 E-value: 3.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 25 LRGAELTVHAGELVALVGPSGAGKSTLL---------------------HIAGLLERPTAGtvRIAGTDVSALDDGKRTE 83
Cdd:cd03270 11 LKNVDVDIPRNKLVVITGVSGSGKSSLAfdtiyaegqrryveslsayarQFLGQMDKPDVD--SIEGLSPAIAIDQKTTS 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 84 VRRRS-VGFVYQFHHLLPEFSALENIvlpqmingvakrtaRERaLELLRMVGLEPRAGHRPAR-LSGGEQQRVAIARALA 161
Cdd:cd03270 89 RNPRStVGTVTEIYDYLRLLFARVGI--------------RER-LGFLVDVGLGYLTLSRSAPtLSGGEAQRIRLATQIG 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 162 NG-PGLL-IADEPTGNLDPHTAEGVFAMLTTIvRQARVGALIATHNLELANRMDRVFEMSDG 221
Cdd:cd03270 154 SGlTGVLyVLDEPSIGLHPRDNDRLIETLKRL-RDLGNTVLVVEHDEDTIRAADHVIDIGPG 214
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
25-171 |
7.90e-05 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 42.96 E-value: 7.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 25 LRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGT-DVSALDDGkrtevrrrsvgfvyqfhhLLPEFS 103
Cdd:PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSaALIAISSG------------------LNGQLT 101
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1840515274 104 ALENIVLPQMINGVAKRTARERALELLRMVGLEpRAGHRPAR-LSGGEQQRVAIARALANGPGLLIADE 171
Cdd:PRK13545 102 GIENIELKGLMMGLTKEKIKEIIPEIIEFADIG-KFIYQPVKtYSSGMKSRLGFAISVHINPDILVIDE 169
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
142-218 |
1.51e-04 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 42.51 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 142 RP-ARLSGGEQQRVAIARALANG---PGLLIADEPTGNLDPHTAEGVFAMLTTIVRQARVgALIATHNLELANRMDRVFE 217
Cdd:PRK00635 805 RPlSSLSGGEIQRLKLAYELLAPskkPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHT-VVIIEHNMHVVKVADYVLE 883
|
.
gi 1840515274 218 M 218
Cdd:PRK00635 884 L 884
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
24-177 |
1.60e-04 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 42.08 E-value: 1.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLLH-IAGLLErPTAGTVRIAgtdvsalddgkrtevrrRSVGFVYQFHHLLPEF 102
Cdd:PRK10636 327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKlLAGELA-PVSGEIGLA-----------------KGIKLGYFAQHQLEFL 388
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 103 SALENIVlpQMINGVAKRTARERALELLRMVGLE-PRAGHRPARLSGGEQQRVAIARALANGPGLLIADEPTGNLD 177
Cdd:PRK10636 389 RADESPL--QHLARLAPQELEQKLRDYLGGFGFQgDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
24-226 |
3.45e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 41.26 E-value: 3.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVS--ALDDgkrtevRRRSVGFVYQFHHL--- 98
Cdd:PLN03130 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISkfGLMD------LRKVLGIIPQAPVLfsg 1327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 99 -----LPEFS---------ALENIVLpqmingvaKRTARERALellrmvGLEPRAGHRPARLSGGEQQRVAIARALANGP 164
Cdd:PLN03130 1328 tvrfnLDPFNehndadlweSLERAHL--------KDVIRRNSL------GLDAEVSEAGENFSVGQRQLLSLARALLRRS 1393
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1840515274 165 GLLIADEPTGNLDPHTAegvfAMLTTIVRQA--RVGALIATHNLELANRMDRVFEMSDGLLVEH 226
Cdd:PLN03130 1394 KILVLDEATAAVDVRTD----ALIQKTIREEfkSCTMLIIAHRLNTIIDCDRILVLDAGRVVEF 1453
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
115-214 |
4.26e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 4.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 115 NGVAKRTARERALELLRMVG---LEPRAghrpaRLSGGEQQ------RVAIARALANGPGLLIADEPTGNLDPHTAEGVF 185
Cdd:TIGR00606 1171 NVSASDKRRNYNYRVVMLKGdtaLDMRG-----RCSAGQKVlasliiRLALAETFCLNCGIIALDEPTTNLDRENIESLA 1245
|
90 100 110
....*....|....*....|....*....|...
gi 1840515274 186 AMLTTIVRQARVG----ALIATHNLELANRMDR 214
Cdd:TIGR00606 1246 HALVEIIKSRSQQrnfqLLVITHDEDFVELLGR 1278
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
24-201 |
4.86e-04 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 40.22 E-value: 4.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 24 VLRGAELTVHAGELVALVGPSGAGKSTLLHiAGLLERPTAGTVRIAGTDVSALDDGKRtevrRRSVGFVYQ--------F 95
Cdd:cd03289 19 VLENISFSISPGQRVGLLGRTGSGKSTLLS-AFLRLLNTEGDIQIDGVSWNSVPLQKW----RKAFGVIPQkvfifsgtF 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 96 HHLLPEFSALENIVLPQMINGVAKRTARERALELLRMVGLEprAGHRparLSGGEQQRVAIARALANGPGLLIADEPTGN 175
Cdd:cd03289 94 RKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVD--GGCV---LSHGHKQLMCLARSVLSKAKILLLDEPSAH 168
|
170 180 190
....*....|....*....|....*....|...
gi 1840515274 176 LDPHTAEGV-------FAMLTTIVRQARVGALI 201
Cdd:cd03289 169 LDPITYQVIrktlkqaFADCTVILSEHRIEAML 201
|
|
| YjeQ_EngC |
cd01854 |
Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; ... |
34-67 |
8.67e-04 |
|
Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain.
Pssm-ID: 206747 [Multi-domain] Cd Length: 211 Bit Score: 39.30 E-value: 8.67e-04
10 20 30
....*....|....*....|....*....|....*
gi 1840515274 34 AGELVALVGPSGAGKSTLL-HIAGLLERPTaGTVR 67
Cdd:cd01854 84 KGKTSVLVGQSGVGKSTLLnALLPELVLAT-GEIS 117
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
32-215 |
9.45e-04 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 38.71 E-value: 9.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 32 VHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGTDVSalddgkrtevrrrsvgfvyqfhhllpefsaleniVLP 111
Cdd:cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPV----------------------------------YKP 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 112 QMINgvakrtareralellrmvglepraghrparLSGGEQQRVAIARALANGPGLLIADEPTGNLDPHTAEGVFAMLTTI 191
Cdd:cd03222 68 QYID------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRL 117
|
170 180
....*....|....*....|....*
gi 1840515274 192 VRQARVGALIATHNLELANRM-DRV 215
Cdd:cd03222 118 SEEGKKTALVVEHDLAVLDYLsDRI 142
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
125-173 |
9.64e-04 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 40.01 E-value: 9.64e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1840515274 125 RALELLRMVGLE-PRAGHrPA-RLSGGEQQRVAIARALA---NGPGLLIADEPT 173
Cdd:COG0178 805 RKLQTLQDVGLGyIKLGQ-PAtTLSGGEAQRVKLASELSkrsTGKTLYILDEPT 857
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
25-76 |
1.41e-03 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 39.03 E-value: 1.41e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1840515274 25 LRGAELTVHAGELVALVGPSGAGKSTLLHIAGLLERPTAGTVRIAGtDVSAL 76
Cdd:PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-EVSVI 90
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
60-178 |
1.97e-03 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 38.84 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 60 RPTAGTVRIAGTDVSalddgkrtEVRRRSVGFVYQFhhllpeFSALENIVLPQMINGVAKRTARERaLELLRMVGLEPRA 139
Cdd:TIGR00630 417 KPEALAVTVGGKSIA--------DVSELSIREAHEF------FNQLTLTPEEKKIAEEVLKEIRER-LGFLIDVGLDYLS 481
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1840515274 140 GHRPAR-LSGGEQQRVAIARALANG-PGLL-IADEPTGNLDP 178
Cdd:TIGR00630 482 LSRAAGtLSGGEAQRIRLATQIGSGlTGVLyVLDEPSIGLHQ 523
|
|
| RsgA_GTPase |
pfam03193 |
RsgA GTPase; RsgA (also known as EngC and YjeQ) represents a protein family whose members are ... |
34-87 |
2.19e-03 |
|
RsgA GTPase; RsgA (also known as EngC and YjeQ) represents a protein family whose members are broadly conserved in bacteria and are indispensable for growth. The GTPase domain of RsgA is very similar to several P-loop GTPases, but differs in having a circular permutation of the GTPase structure described by a G4-G1-G3 pattern.
Pssm-ID: 427191 [Multi-domain] Cd Length: 174 Bit Score: 37.52 E-value: 2.19e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1840515274 34 AGELVALVGPSGAGKSTLL-HIAGLLERPTAgtvriagtDVSA-LDDGKRTEVRRR 87
Cdd:pfam03193 105 KGKTTVLAGQSGVGKSTLLnALLPELDLRTG--------EISEkLGRGRHTTTHVE 152
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
60-173 |
2.49e-03 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 38.47 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 60 RPTAGTVRIAGTDVSalddgkrtEVRRRSVGFVYQFhhllpefsaLENIVLPQMINGVAKRTARE-RA-LELLRMVGLep 137
Cdd:COG0178 414 KPEALAVKIGGKNIA--------ELTALSIDEALEF---------FENLELTEREAEIAERILKEiRSrLGFLVDVGL-- 474
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1840515274 138 raGH----RPAR-LSGGEQQRVAIARALanGPGLL----IADEPT 173
Cdd:COG0178 475 --DYltldRSAGtLSGGEAQRIRLATQI--GSGLVgvlyVLDEPS 515
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
125-173 |
6.73e-03 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 37.36 E-value: 6.73e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1840515274 125 RALELLRMVGLE-PRAGhRPA-RLSGGEQQRVAIARAL---ANGPGLLIADEPT 173
Cdd:PRK00349 809 RKLQTLVDVGLGyIKLG-QPAtTLSGGEAQRVKLAKELskrSTGKTLYILDEPT 861
|
|
| EF-G_bact |
cd04170 |
Elongation factor G (EF-G) family; Translocation is mediated by EF-G (also called translocase). ... |
38-98 |
9.44e-03 |
|
Elongation factor G (EF-G) family; Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains only bacterial members.
Pssm-ID: 206733 [Multi-domain] Cd Length: 268 Bit Score: 36.42 E-value: 9.44e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840515274 38 VALVGPSGAGKSTL----LHIAGLLERPtaGTVRiAGTDVSALDDGKRTevRRRSV-----GFVYQFHHL 98
Cdd:cd04170 2 IALVGHSGSGKTTLaealLYATGAIDRL--GRVE-DGNTVSDYDPEEKK--RKMSIetsvaPLEWNGHKI 66
|
|
| |
