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Conserved domains on  [gi|1839605827|ref|XP_034072887|]
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protein O-glucosyltransferase 1 isoform X1 [Gymnodraco acuticeps]

Protein Classification

glycosyltransferase family protein( domain architecture ID 581341)

glycosyltransferase family protein may synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Glyco_transf_90 super family cl23835
Glycosyl transferase family 90; This family of glycosyl transferases are specifically ...
 45-387 8.92e-122

Glycosyl transferase family 90; This family of glycosyl transferases are specifically (mannosyl) glucuronoxylomannan/galactoxylomannan -beta 1,2-xylosyltransferases, EC:2.4.2.-.


The actual alignment was detected with superfamily member pfam05686:

Pssm-ID: 329112  Cd Length: 396  Bit Score: 358.33  E-value: 8.92e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839605827  45 CNPVNCSCHLSVLQGDLQPFKGF-ISEDvMAATVQRGVGTHYQIIGHKLYRER-NCMFPASlyicSLSRCSGVEHFILEV 122
Cdd:pfam05686   1 SSSPTCPDYFRWIHEDLEPWRETgITRE-MVERAKRKAHFRYVIINGRVYVETyGESFQTR----DVFTIWGILQLLRKY 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839605827 123 IDRLPDLEMVVNVRDYPQVPSWVKPTL-----PVFSFSKTADYQDIMYPAWTFWEggpavWPiyPTGLGRWDLMRDDLKK 197
Cdd:pfam05686  76 PGRLPDLELMFNCGDWPVVKKRDYRGPnanppPLFSYCGDDDTLDIVFPDWSFWG-----WP--EVNIGRWDLLRKDLKE 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839605827 198 SAAQWPWNQKESRGFFRGSRTSAE-RDPLILLSREAPELVDAEYTKNqawksERDTLGRPPAKEIPLVDHCKYKYLFNFR 276
Cdd:pfam05686 149 GNTRVKWEDREPYAYWRGNPSVAEtRLELVKCNRSNPEDWDARLTNQ-----DWDTEYRPGFKHSSLVDQCTHKYKIYIE 223

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839605827 277 GVAASFRFKHLFLCGALVFHVGDEWQEFFYPQLRPWVHYIPV--QQDLSDVRELLQFVKENDDIAQEIASRGKEFILEHL 354
Cdd:pfam05686 224 GVAWSVSLKYILACDSLVLHVGPEYYDFFYRGLKPWVHYWPIksDDDCRDLKEAVDWGNAHDDEAQKIAERGSEFIRENL 303

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1839605827 355 RMKDVSCYWERLLTDFSSLLTYKPKLNSNYNQI 387
Cdd:pfam05686 304 KMDDVYDYMFHLLTEYAKLLKYKPTVPKGAVEV 336
 
Name Accession Description Interval E-value
Glyco_transf_90 pfam05686
Glycosyl transferase family 90; This family of glycosyl transferases are specifically ...
 45-387 8.92e-122

Glycosyl transferase family 90; This family of glycosyl transferases are specifically (mannosyl) glucuronoxylomannan/galactoxylomannan -beta 1,2-xylosyltransferases, EC:2.4.2.-.


Pssm-ID: 310354  Cd Length: 396  Bit Score: 358.33  E-value: 8.92e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839605827  45 CNPVNCSCHLSVLQGDLQPFKGF-ISEDvMAATVQRGVGTHYQIIGHKLYRER-NCMFPASlyicSLSRCSGVEHFILEV 122
Cdd:pfam05686   1 SSSPTCPDYFRWIHEDLEPWRETgITRE-MVERAKRKAHFRYVIINGRVYVETyGESFQTR----DVFTIWGILQLLRKY 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839605827 123 IDRLPDLEMVVNVRDYPQVPSWVKPTL-----PVFSFSKTADYQDIMYPAWTFWEggpavWPiyPTGLGRWDLMRDDLKK 197
Cdd:pfam05686  76 PGRLPDLELMFNCGDWPVVKKRDYRGPnanppPLFSYCGDDDTLDIVFPDWSFWG-----WP--EVNIGRWDLLRKDLKE 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839605827 198 SAAQWPWNQKESRGFFRGSRTSAE-RDPLILLSREAPELVDAEYTKNqawksERDTLGRPPAKEIPLVDHCKYKYLFNFR 276
Cdd:pfam05686 149 GNTRVKWEDREPYAYWRGNPSVAEtRLELVKCNRSNPEDWDARLTNQ-----DWDTEYRPGFKHSSLVDQCTHKYKIYIE 223

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839605827 277 GVAASFRFKHLFLCGALVFHVGDEWQEFFYPQLRPWVHYIPV--QQDLSDVRELLQFVKENDDIAQEIASRGKEFILEHL 354
Cdd:pfam05686 224 GVAWSVSLKYILACDSLVLHVGPEYYDFFYRGLKPWVHYWPIksDDDCRDLKEAVDWGNAHDDEAQKIAERGSEFIRENL 303

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1839605827 355 RMKDVSCYWERLLTDFSSLLTYKPKLNSNYNQI 387
Cdd:pfam05686 304 KMDDVYDYMFHLLTEYAKLLKYKPTVPKGAVEV 336
CAP10 smart00672
Putative lipopolysaccharide-modifying enzyme;
125-377 4.74e-92

Putative lipopolysaccharide-modifying enzyme;


Pssm-ID: 214773  Cd Length: 256  Bit Score: 277.38  E-value: 4.74e-92
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839605827  125 RLPDLEMVVNVRDYPQV------PSWVKPTLPVFSFSKTADYQDIMYPAWTFWEGgpavwpiYPTGLGR-WDLMRDDLKK 197
Cdd:smart00672   1 RVPDLELMFNCRDWPLInkksfaSYNQHAPPPLFSYCGSDEYLDIVFPDWSFWAG-------WPEVNGRpWDKDLMELEE 73

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839605827  198 SAAQWPWNQKESRGFFRGSRTSA-ERDPLILLSREAPELVDAEYTKNQAWKSERDTLGRPPAKEIPLVDHCKYKYLFNFR 276
Cdd:smart00672  74 GNKRTKWSDKNAYAYWRGNPTVAsERLDLIKCNQSSPELVNARITIQDWPGKCDGEEDAPGFKKSPLEEQCKHKYKINIE 153

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839605827  277 GVAASFRFKHLFLCGALVFHVGDEWQEFFYPQLRPWVHYIPVQQDLSD--VRELLQFVKENDDIAQEIASRGKEFILEHL 354
Cdd:smart00672 154 GVAWSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIKSDLSCreLKEAVDWGNEHDKKAQEIGKRGSEFIQQNL 233

                          250       260
                   ....*....|....*....|...
gi 1839605827  355 RMKDVSCYWERLLTDFSSLLTYK 377
Cdd:smart00672 234 SMEDVYDYMFHLLQEYAKLLKYK 256
 
Name Accession Description Interval E-value
Glyco_transf_90 pfam05686
Glycosyl transferase family 90; This family of glycosyl transferases are specifically ...
 45-387 8.92e-122

Glycosyl transferase family 90; This family of glycosyl transferases are specifically (mannosyl) glucuronoxylomannan/galactoxylomannan -beta 1,2-xylosyltransferases, EC:2.4.2.-.


Pssm-ID: 310354  Cd Length: 396  Bit Score: 358.33  E-value: 8.92e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839605827  45 CNPVNCSCHLSVLQGDLQPFKGF-ISEDvMAATVQRGVGTHYQIIGHKLYRER-NCMFPASlyicSLSRCSGVEHFILEV 122
Cdd:pfam05686   1 SSSPTCPDYFRWIHEDLEPWRETgITRE-MVERAKRKAHFRYVIINGRVYVETyGESFQTR----DVFTIWGILQLLRKY 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839605827 123 IDRLPDLEMVVNVRDYPQVPSWVKPTL-----PVFSFSKTADYQDIMYPAWTFWEggpavWPiyPTGLGRWDLMRDDLKK 197
Cdd:pfam05686  76 PGRLPDLELMFNCGDWPVVKKRDYRGPnanppPLFSYCGDDDTLDIVFPDWSFWG-----WP--EVNIGRWDLLRKDLKE 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839605827 198 SAAQWPWNQKESRGFFRGSRTSAE-RDPLILLSREAPELVDAEYTKNqawksERDTLGRPPAKEIPLVDHCKYKYLFNFR 276
Cdd:pfam05686 149 GNTRVKWEDREPYAYWRGNPSVAEtRLELVKCNRSNPEDWDARLTNQ-----DWDTEYRPGFKHSSLVDQCTHKYKIYIE 223

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839605827 277 GVAASFRFKHLFLCGALVFHVGDEWQEFFYPQLRPWVHYIPV--QQDLSDVRELLQFVKENDDIAQEIASRGKEFILEHL 354
Cdd:pfam05686 224 GVAWSVSLKYILACDSLVLHVGPEYYDFFYRGLKPWVHYWPIksDDDCRDLKEAVDWGNAHDDEAQKIAERGSEFIRENL 303

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1839605827 355 RMKDVSCYWERLLTDFSSLLTYKPKLNSNYNQI 387
Cdd:pfam05686 304 KMDDVYDYMFHLLTEYAKLLKYKPTVPKGAVEV 336
CAP10 smart00672
Putative lipopolysaccharide-modifying enzyme;
125-377 4.74e-92

Putative lipopolysaccharide-modifying enzyme;


Pssm-ID: 214773  Cd Length: 256  Bit Score: 277.38  E-value: 4.74e-92
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839605827  125 RLPDLEMVVNVRDYPQV------PSWVKPTLPVFSFSKTADYQDIMYPAWTFWEGgpavwpiYPTGLGR-WDLMRDDLKK 197
Cdd:smart00672   1 RVPDLELMFNCRDWPLInkksfaSYNQHAPPPLFSYCGSDEYLDIVFPDWSFWAG-------WPEVNGRpWDKDLMELEE 73

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839605827  198 SAAQWPWNQKESRGFFRGSRTSA-ERDPLILLSREAPELVDAEYTKNQAWKSERDTLGRPPAKEIPLVDHCKYKYLFNFR 276
Cdd:smart00672  74 GNKRTKWSDKNAYAYWRGNPTVAsERLDLIKCNQSSPELVNARITIQDWPGKCDGEEDAPGFKKSPLEEQCKHKYKINIE 153

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839605827  277 GVAASFRFKHLFLCGALVFHVGDEWQEFFYPQLRPWVHYIPVQQDLSD--VRELLQFVKENDDIAQEIASRGKEFILEHL 354
Cdd:smart00672 154 GVAWSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIKSDLSCreLKEAVDWGNEHDKKAQEIGKRGSEFIQQNL 233

                          250       260
                   ....*....|....*....|...
gi 1839605827  355 RMKDVSCYWERLLTDFSSLLTYK 377
Cdd:smart00672 234 SMEDVYDYMFHLLQEYAKLLKYK 256
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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