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Conserved domains on  [gi|1838561376|gb|QJQ30990|]
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WOX transcription factor CB1-3 [Aegilops speltoides]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Homeodomain super family cl47488
Homeodomain;
11-72 1.06e-11

Homeodomain;


The actual alignment was detected with superfamily member pfam00046:

Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 57.90  E-value: 1.06e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1838561376  11 KCGRWNPTAEQVKVLTELFRAgLRTPSTEQIQRISTHLsafgKVESKNVFYWFQNHKARERH 72
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQE-NPYPSAEEREELAAQL----GLTERQVKVWFQNRRAKWKR 57
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
11-72 1.06e-11

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 57.90  E-value: 1.06e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1838561376  11 KCGRWNPTAEQVKVLTELFRAgLRTPSTEQIQRISTHLsafgKVESKNVFYWFQNHKARERH 72
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQE-NPYPSAEEREELAAQL----GLTERQVKVWFQNRRAKWKR 57
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 14-71 1.23e-04

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 38.77  E-value: 1.23e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1838561376   14 RWNPTAEQVKVLTELFRAGlRTPSTEQIQRIS--THLSAfgkvesKNVFYWFQNHKARER 71
Cdd:smart00389   5 RTSFTPEQLEELEKEFQKN-PYPSREEREELAkkLGLSE------RQVKVWFQNRRAKWK 57
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
18-98 7.25e-04

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 38.57  E-value: 7.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1838561376  18 TAEQVKVLTELFRAGlRTPSTEQIQRISTHLsafgKVESKNVFYWFQNHKARERhhhKKRRRVascspDSSSNEEESGRA 97
Cdd:COG5576    59 TDEQLMVLEREFEIN-PYPSSITRIKLSLLL----NMPPKSVQIWFQNKRAKEK---KKRSGK-----VEQRPGEEEADL 125


                  .
gi 1838561376  98 A 98
Cdd:COG5576   126 A 126
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 14-74 1.37e-03

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 35.68  E-value: 1.37e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1838561376  14 RWNPTAEQVKVLTELFRAGlRTPSTEQIQRISTHLsafgKVESKNVFYWFQNHKARERHHH 74
Cdd:cd00086     4 RTRFTPEQLEELEKEFEKN-PYPSREEREELAKEL----GLTERQVKIWFQNRRAKLKRSE 59
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
11-72 1.06e-11

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 57.90  E-value: 1.06e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1838561376  11 KCGRWNPTAEQVKVLTELFRAgLRTPSTEQIQRISTHLsafgKVESKNVFYWFQNHKARERH 72
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQE-NPYPSAEEREELAAQL----GLTERQVKVWFQNRRAKWKR 57
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 14-71 1.23e-04

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 38.77  E-value: 1.23e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1838561376   14 RWNPTAEQVKVLTELFRAGlRTPSTEQIQRIS--THLSAfgkvesKNVFYWFQNHKARER 71
Cdd:smart00389   5 RTSFTPEQLEELEKEFQKN-PYPSREEREELAkkLGLSE------RQVKVWFQNRRAKWK 57
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
18-98 7.25e-04

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 38.57  E-value: 7.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1838561376  18 TAEQVKVLTELFRAGlRTPSTEQIQRISTHLsafgKVESKNVFYWFQNHKARERhhhKKRRRVascspDSSSNEEESGRA 97
Cdd:COG5576    59 TDEQLMVLEREFEIN-PYPSSITRIKLSLLL----NMPPKSVQIWFQNKRAKEK---KKRSGK-----VEQRPGEEEADL 125


                  .
gi 1838561376  98 A 98
Cdd:COG5576   126 A 126
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 14-74 1.37e-03

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 35.68  E-value: 1.37e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1838561376  14 RWNPTAEQVKVLTELFRAGlRTPSTEQIQRISTHLsafgKVESKNVFYWFQNHKARERHHH 74
Cdd:cd00086     4 RTRFTPEQLEELEKEFEKN-PYPSREEREELAKEL----GLTERQVKIWFQNRRAKLKRSE 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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