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Conserved domains on  [gi|1836289099|gb|QJI07157|]
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7a protein [Canine coronavirus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Corona_7 super family cl03571
Coronavirus protein 7; This is a family of proteins from coronavirus which may function in ...
 1-100 7.09e-21

Coronavirus protein 7; This is a family of proteins from coronavirus which may function in viral assembly.


The actual alignment was detected with superfamily member pfam02398:

Pssm-ID: 280545  Cd Length: 101  Bit Score: 79.60  E-value: 7.09e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1836289099   1 MLVFLHAVFITVLILLLIGRLQLLERLLLNHSLNLKTVNNVLGVTDTGLKVNCLQLLKPDCLDFNILHRSLAETRLLKVV 80
Cdd:pfam02398   1 MLVFVHAVLVTALILLLIGRIQLLERLLLSHLLNLTTVSNVLGVPDSSLRVNCLQLLKPDCLDFNILHKVLAETRLLVVV 80

                          90       100
                  ....*....|....*....|
gi 1836289099  81 LRVIFLVLLGFCCYRLLVTL 100
Cdd:pfam02398  81 LRVIFLVLLGFSCYTLLGAL 100
 
Name Accession Description Interval E-value
Corona_7 pfam02398
Coronavirus protein 7; This is a family of proteins from coronavirus which may function in ...
 1-100 7.09e-21

Coronavirus protein 7; This is a family of proteins from coronavirus which may function in viral assembly.


Pssm-ID: 280545  Cd Length: 101  Bit Score: 79.60  E-value: 7.09e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1836289099   1 MLVFLHAVFITVLILLLIGRLQLLERLLLNHSLNLKTVNNVLGVTDTGLKVNCLQLLKPDCLDFNILHRSLAETRLLKVV 80
Cdd:pfam02398   1 MLVFVHAVLVTALILLLIGRIQLLERLLLSHLLNLTTVSNVLGVPDSSLRVNCLQLLKPDCLDFNILHKVLAETRLLVVV 80

                          90       100
                  ....*....|....*....|
gi 1836289099  81 LRVIFLVLLGFCCYRLLVTL 100
Cdd:pfam02398  81 LRVIFLVLLGFSCYTLLGAL 100
 
Name Accession Description Interval E-value
Corona_7 pfam02398
Coronavirus protein 7; This is a family of proteins from coronavirus which may function in ...
 1-100 7.09e-21

Coronavirus protein 7; This is a family of proteins from coronavirus which may function in viral assembly.


Pssm-ID: 280545  Cd Length: 101  Bit Score: 79.60  E-value: 7.09e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1836289099   1 MLVFLHAVFITVLILLLIGRLQLLERLLLNHSLNLKTVNNVLGVTDTGLKVNCLQLLKPDCLDFNILHRSLAETRLLKVV 80
Cdd:pfam02398   1 MLVFVHAVLVTALILLLIGRIQLLERLLLSHLLNLTTVSNVLGVPDSSLRVNCLQLLKPDCLDFNILHKVLAETRLLVVV 80

                          90       100
                  ....*....|....*....|
gi 1836289099  81 LRVIFLVLLGFCCYRLLVTL 100
Cdd:pfam02398  81 LRVIFLVLLGFSCYTLLGAL 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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