NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1836287299|gb|QJI05923|]
View 

15.9 kDa protein [Human adenovirus E4]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Adeno_E4_34 super family cl04566
Adenovirus early E4 34 kDa protein conserved region; Conserved region found in the Adenovirus ...
 2-62 3.10e-04

Adenovirus early E4 34 kDa protein conserved region; Conserved region found in the Adenovirus E4 34 kDa protein.


The actual alignment was detected with superfamily member pfam04528:

Pssm-ID: 461344  Cd Length: 145  Bit Score: 38.52  E-value: 3.10e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1836287299   2 SGNSSIMTRSRTRLALSCHHPYQppATLPRCEETESRASLVEDHPVLPDCDTLSMHNITVI 62
Cdd:pfam04528   4 SFRMFGDGAMFNQRFISRREPVN--RDMLKEFEFESRAFILEDHLILLECNTDGHHGSSVP 62
 
Name Accession Description Interval E-value
Adeno_E4_34 pfam04528
Adenovirus early E4 34 kDa protein conserved region; Conserved region found in the Adenovirus ...
 2-62 3.10e-04

Adenovirus early E4 34 kDa protein conserved region; Conserved region found in the Adenovirus E4 34 kDa protein.


Pssm-ID: 461344  Cd Length: 145  Bit Score: 38.52  E-value: 3.10e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1836287299   2 SGNSSIMTRSRTRLALSCHHPYQppATLPRCEETESRASLVEDHPVLPDCDTLSMHNITVI 62
Cdd:pfam04528   4 SFRMFGDGAMFNQRFISRREPVN--RDMLKEFEFESRAFILEDHLILLECNTDGHHGSSVP 62
 
Name Accession Description Interval E-value
Adeno_E4_34 pfam04528
Adenovirus early E4 34 kDa protein conserved region; Conserved region found in the Adenovirus ...
 2-62 3.10e-04

Adenovirus early E4 34 kDa protein conserved region; Conserved region found in the Adenovirus E4 34 kDa protein.


Pssm-ID: 461344  Cd Length: 145  Bit Score: 38.52  E-value: 3.10e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1836287299   2 SGNSSIMTRSRTRLALSCHHPYQppATLPRCEETESRASLVEDHPVLPDCDTLSMHNITVI 62
Cdd:pfam04528   4 SFRMFGDGAMFNQRFISRREPVN--RDMLKEFEFESRAFILEDHLILLECNTDGHHGSSVP 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH