NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1835287904|gb|QJE63447|]
View 

cytochrome b, partial (mitochondrion) [Colobosaura modesta]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-223 2.97e-152

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 427.78  E-value: 2.97e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   1 IIQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSYFYKETWNIGVVLLF 80
Cdd:MTH00119   43 ITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLL 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  81 LLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLHFTLPFLLTGVSMLHLLMLH 160
Cdd:MTH00119  123 LLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLH 202

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1835287904 161 ETGSNNPLGINSNTDKIPFHPYFIYKDLFGAAITLTLFLMIVLFTPNMLGDPENFIPANPMTT 223
Cdd:MTH00119  203 ETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVT 265
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-223 2.97e-152

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 427.78  E-value: 2.97e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   1 IIQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSYFYKETWNIGVVLLF 80
Cdd:MTH00119   43 ITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLL 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  81 LLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLHFTLPFLLTGVSMLHLLMLH 160
Cdd:MTH00119  123 LLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLH 202

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1835287904 161 ETGSNNPLGINSNTDKIPFHPYFIYKDLFGAAITLTLFLMIVLFTPNMLGDPENFIPANPMTT 223
Cdd:MTH00119  203 ETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVT 265
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-223 7.14e-90

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 269.74  E-value: 7.14e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   1 IIQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSYfyKE----TWNIGV 76
Cdd:COG1290    51 VIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGV 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  77 VLLFLLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLH-FTLPFLLTGVSMLH 155
Cdd:COG1290   129 LLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLH 208

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835287904 156 LLMLHETGSNNPLGINSNT----DKIPFHPYFIYKDLFGAAITLTLFLMIVLFTPNmlGDPENFIPANPMTT 223
Cdd:COG1290   209 LWLLHRHGHNNPPGPERKKtekvDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLAT 278
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-165 3.78e-76

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 228.02  E-value: 3.78e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   1 IIQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSYF--YKETWNIGVVL 78
Cdd:cd00284    34 VIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKkpRELTWVIGVIL 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  79 LFLLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLHFTLPFLLTGVSMLHLLM 158
Cdd:cd00284   114 LLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLF 193


                  ....*..
gi 1835287904 159 LHETGSN 165
Cdd:cd00284   194 LHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-163 2.79e-70

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 212.63  E-value: 2.79e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   1 IIQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSYFY--KETWNIGVVL 78
Cdd:pfam00033  25 AVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSYprELTWVIGVIL 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  79 LFLLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLHFTLPFLLTGVSMLHLLM 158
Cdd:pfam00033 105 LVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLF 184


                  ....*
gi 1835287904 159 LHETG 163
Cdd:pfam00033 185 LHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-223 2.97e-152

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 427.78  E-value: 2.97e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   1 IIQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSYFYKETWNIGVVLLF 80
Cdd:MTH00119   43 ITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLL 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  81 LLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLHFTLPFLLTGVSMLHLLMLH 160
Cdd:MTH00119  123 LLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLH 202

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1835287904 161 ETGSNNPLGINSNTDKIPFHPYFIYKDLFGAAITLTLFLMIVLFTPNMLGDPENFIPANPMTT 223
Cdd:MTH00119  203 ETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVT 265
CYTB MTH00156
cytochrome b; Provisional
 1-223 1.56e-145

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 409.56  E-value: 1.56e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   1 IIQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSYFYKETWNIGVVLLF 80
Cdd:MTH00156   32 MIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILF 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  81 LLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLHFTLPFLLTGVSMLHLLMLH 160
Cdd:MTH00156  112 LVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLH 191

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1835287904 161 ETGSNNPLGINSNTDKIPFHPYFIYKDLFGAAITLTLFLMIVLFTPNMLGDPENFIPANPMTT 223
Cdd:MTH00156  192 QTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVT 254
CYTB MTH00131
cytochrome b; Provisional
 1-223 9.46e-142

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 400.95  E-value: 9.46e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   1 IIQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSYFYKETWNIGVVLLF 80
Cdd:MTH00131   42 ITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLL 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  81 LLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLHFTLPFLLTGVSMLHLLMLH 160
Cdd:MTH00131  122 LVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLH 201

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1835287904 161 ETGSNNPLGINSNTDKIPFHPYFIYKDLFGAAITLTLFLMIVLFTPNMLGDPENFIPANPMTT 223
Cdd:MTH00131  202 ETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVT 264
CYTB MTH00074
cytochrome b; Provisional
 1-223 1.90e-140

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 397.90  E-value: 1.90e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   1 IIQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSYFYKETWNIGVVLLF 80
Cdd:MTH00074   43 IAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLF 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  81 LLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLHFTLPFLLTGVSMLHLLMLH 160
Cdd:MTH00074  123 LVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLH 202

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1835287904 161 ETGSNNPLGINSNTDKIPFHPYFIYKDLFGAAITLTLFLMIVLFTPNMLGDPENFIPANPMTT 223
Cdd:MTH00074  203 ETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVT 265
CYTB MTH00191
cytochrome b; Provisional
 1-223 5.47e-140

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 395.82  E-value: 5.47e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   1 IIQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSYFYKETWNIGVVLLF 80
Cdd:MTH00191   39 IIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLI 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  81 LLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLHFTLPFLLTGVSMLHLLMLH 160
Cdd:MTH00191  119 LSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLH 198

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1835287904 161 ETGSNNPLGINSNTDKIPFHPYFIYKDLFGAAITLTLFLMIVLFTPNMLGDPENFIPANPMTT 223
Cdd:MTH00191  199 ETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVT 261
CYTB MTH00100
cytochrome b; Provisional
 1-223 4.10e-138

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 391.69  E-value: 4.10e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   1 IIQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSYFYKETWNIGVVLLF 80
Cdd:MTH00100   42 ILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLF 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  81 LLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLHFTLPFLLTGVSMLHLLMLH 160
Cdd:MTH00100  122 TVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLH 201

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1835287904 161 ETGSNNPLGINSNTDKIPFHPYFIYKDLFGAAITLTLFLMIVLFTPNMLGDPENFIPANPMTT 223
Cdd:MTH00100  202 ETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNT 264
CYTB MTH00145
cytochrome b; Provisional
 1-223 7.42e-134

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 380.79  E-value: 7.42e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   1 IIQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSYFYKETWNIGVVLLF 80
Cdd:MTH00145   43 GIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLL 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  81 LLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLHFTLPFLLTGVSMLHLLMLH 160
Cdd:MTH00145  123 LSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLH 202

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1835287904 161 ETGSNNPLGINSNTDKIPFHPYFIYKDLFGAAITLTLFLMIVLFTPNMLGDPENFIPANPMTT 223
Cdd:MTH00145  203 ETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVT 265
CYTB MTH00016
cytochrome b; Validated
 1-223 2.15e-126

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 362.07  E-value: 2.15e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   1 IIQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSYFYKETWNIGVVLLF 80
Cdd:MTH00016   43 VIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLL 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  81 LLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLHFTLPFLLTGVSMLHLLMLH 160
Cdd:MTH00016  123 LTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLH 202

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1835287904 161 ETGSNNPLGINSNTDKIPFHPYFIYKDLFGAAITLTLFLMIVLFTPNMLGDPENFIPANPMTT 223
Cdd:MTH00016  203 QTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVT 265
CYTB MTH00034
cytochrome b; Validated
 1-223 1.15e-124

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 357.86  E-value: 1.15e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   1 IIQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSYFYKETWNIGVVLLF 80
Cdd:MTH00034   42 IIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFL 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  81 LLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLHFTLPFLLTGVSMLHLLMLH 160
Cdd:MTH00034  122 LTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLH 201

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1835287904 161 ETGSNNPLGINSNTDKIPFHPYFIYKDLFGAAITLTLFLMIVLFTPNMLGDPENFIPANPMTT 223
Cdd:MTH00034  202 QTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVT 264
CYTB MTH00224
cytochrome b; Provisional
 1-223 5.55e-110

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 320.33  E-value: 5.55e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   1 IIQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSYFYKETWNIGVVLLF 80
Cdd:MTH00224   43 VIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFI 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  81 LLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLHFTLPFLLTGVSMLHLLMLH 160
Cdd:MTH00224  123 LTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLH 202

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1835287904 161 ETGSNNPLGINSNTDKIPFHPYFIYKDLFGAAITLTLFLMIVLFTPNMLGDPENFIPANPMTT 223
Cdd:MTH00224  203 QTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVT 265
CYTB MTH00022
cytochrome b; Validated
 1-223 1.63e-108

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 316.64  E-value: 1.63e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   1 IIQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSYFYKETWNIGVVLLF 80
Cdd:MTH00022   41 VIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFL 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  81 LLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLHFTLPFLLTGVSMLHLLMLH 160
Cdd:MTH00022  121 LTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLH 200

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1835287904 161 ETGSNNPLGINSNTDKIPFHPYFIYKDLFGAAITLTLFLMIVLFTPNMLGDPENFIPANPMTT 223
Cdd:MTH00022  201 VDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVT 263
CYTB MTH00053
cytochrome b; Provisional
 1-223 1.44e-104

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 306.63  E-value: 1.44e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   1 IIQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSYFYKETWNIGVVLLF 80
Cdd:MTH00053   43 IIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFL 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  81 LLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLHFTLPFLLTGVSMLHLLMLH 160
Cdd:MTH00053  123 LMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALH 202

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1835287904 161 ETGSNNPLGINSNTDKIPFHPYFIYKDLFGAAITLTLFLMIVLFTPNMLGDPENFIPANPMTT 223
Cdd:MTH00053  203 EDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVT 265
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-223 7.14e-90

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 269.74  E-value: 7.14e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   1 IIQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSYfyKE----TWNIGV 76
Cdd:COG1290    51 VIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGV 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  77 VLLFLLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLH-FTLPFLLTGVSMLH 155
Cdd:COG1290   129 LLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLH 208

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835287904 156 LLMLHETGSNNPLGINSNT----DKIPFHPYFIYKDLFGAAITLTLFLMIVLFTPNmlGDPENFIPANPMTT 223
Cdd:COG1290   209 LWLLHRHGHNNPPGPERKKtekvDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLAT 278
CYTB MTH00033
cytochrome b; Provisional
 2-223 4.34e-82

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 249.47  E-value: 4.34e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   2 IQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSYFYKETWNIGVVLLFL 81
Cdd:MTH00033   40 IQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFI 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  82 LMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLHFTLPFLLTGVSMLHLLMLHE 161
Cdd:MTH00033  120 MMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHE 199

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1835287904 162 TGSNNPLGINSNTDKIPFHPYFIYKDLFGAAITLTLFLMIVL--FTPNMLGDPENFIPANPMTT 223
Cdd:MTH00033  200 KGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDPENFIQANPLVT 263
CYTB MTH00086
cytochrome b; Provisional
 1-222 8.46e-79

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 240.23  E-value: 8.46e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   1 IIQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSYFYKETWNIGVVLLF 80
Cdd:MTH00086   31 VFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYL 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  81 LLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLHFTLPFLLTGVSMLHLLMLH 160
Cdd:MTH00086  111 LVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLH 190

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835287904 161 ETGSNNPLGINSNTDKIPFHPYFIYKDLFGAAITLtLFLMIVLFTPNMLGDPENFIPANPMT 222
Cdd:MTH00086  191 STGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWL-VFIIFSLFYPFNLGDPEMFIEADPMM 251
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-165 3.78e-76

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 228.02  E-value: 3.78e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   1 IIQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSYF--YKETWNIGVVL 78
Cdd:cd00284    34 VIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKkpRELTWVIGVIL 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  79 LFLLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLHFTLPFLLTGVSMLHLLM 158
Cdd:cd00284   114 LLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLF 193


                  ....*..
gi 1835287904 159 LHETGSN 165
Cdd:cd00284   194 LHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-163 2.79e-70

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 212.63  E-value: 2.79e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   1 IIQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSYFY--KETWNIGVVL 78
Cdd:pfam00033  25 AVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSYprELTWVIGVIL 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  79 LFLLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLHFTLPFLLTGVSMLHLLM 158
Cdd:pfam00033 105 LVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLF 184


                  ....*
gi 1835287904 159 LHETG 163
Cdd:pfam00033 185 LHETG 189
CYTB MTH00046
cytochrome b; Validated
 1-223 2.32e-64

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 203.29  E-value: 2.32e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   1 IIQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSYFYKETWNIGVVLLF 80
Cdd:MTH00046   33 VIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYL 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  81 LLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLHFTLPFLLTGVSMLHLLMLH 160
Cdd:MTH00046  113 LVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLH 192

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1835287904 161 ETGSNNPLGI-NSNTDKIPFHPYFIYKDLFGAAITLTLFLMIVLFTPNMLGDPENFIPANPMTT 223
Cdd:MTH00046  193 KSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVT 256
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
47-212 8.91e-47

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 152.40  E-value: 8.91e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  47 SMFFICIYLHIGRGLFYGSYFYKE--TWNIGVVLLFLLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLW 124
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904 125 GGFSVDNPTLTRFFTLHFT-LPFLLTGVSMLHLLMLHETGSNNPLGINSNTDKIPFHPYFIYKDLFGAAITLTLFLMIVL 203
Cdd:pfam13631  81 GGPFPGTATIPRFYALHILlLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1835287904 204 FTPNMLGDP 212
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 1-168 1.15e-37

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 130.60  E-value: 1.15e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   1 IIQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSYFYKE--TWNIGVVL 78
Cdd:PRK03735   53 VIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLI 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  79 LFLLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLH-FTLPFLLTGVSMLHLL 157
Cdd:PRK03735  133 FFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFL 212

                         170
                  ....*....|.
gi 1835287904 158 MLHETGSNNPL 168
Cdd:PRK03735  213 MIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-168 4.79e-31

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 113.28  E-value: 4.79e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904   1 IIQLLTGLFLAMHYTADTTLAFSSIANICRDVQYGWLLRMMHANGASMFFICIYLHIGRGLFYGSyFYKE---TWNIGVV 77
Cdd:CHL00070   45 LVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG-FKKPrelTWVTGVV 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835287904  78 LLFLLMATAFMGYILPWGQMSFWGATVITSLLSTTPYVGQTLVEWLWGGFSVDNPTLTRFFTLH-FTLPfLLTGVSML-H 155
Cdd:CHL00070  124 LAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLP-LLTAVFMLmH 202

                         170
                  ....*....|...
gi 1835287904 156 LLMLHETGSNNPL 168
Cdd:CHL00070  203 FLMIRKQGISGPL 215
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 166-223 8.61e-14

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 66.13  E-value: 8.61e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1835287904 166 NPLGINSNTDKIPFHPYFIYKDLFGAAITLTLFLMIVLFTPNMLGDPENFIPANPMTT 223
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLAT 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH