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Conserved domains on  [gi|1835285470|gb|KAF4331498|]
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50S ribosomal protein L4 (apicoplast) [Plasmodium falciparum NF54]

Protein Classification

uL4 family ribosomal protein( domain architecture ID 394)

uL4 family ribosomal protein such as bacteria ribosomal protein L4, archaea 50S ribosomal protein L4, fungi mitochondrial 54S ribosomal protein YmL6, and chloroplast 50S ribosomal protein L4

Gene Ontology:  GO:0003735|GO:0006412|GO:0019843
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L4 super family cl00325
Ribosomal protein L4/L1 family; This family includes Ribosomal L4/L1 from eukaryotes and ...
 53-103 2.53e-05

Ribosomal protein L4/L1 family; This family includes Ribosomal L4/L1 from eukaryotes and archaebacteria and L4 from eubacteria. L4 from yeast has been shown to bind rRNA.


The actual alignment was detected with superfamily member pfam00573:

Pssm-ID: 444837  Cd Length: 190  Bit Score: 42.86  E-value: 2.53e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1835285470  53 YKHTKNKSKVYFSNKKIRVQKGLGKARLKNFKSPVCKQGACNFGP-----FYKENK 103
Cdd:pfam00573  32 THSTKTRSEVSGGGKKPWRQKGTGRARVGSIRSPQWRGGGVAFGPkprdySYKLNK 87
 
Name Accession Description Interval E-value
Ribosomal_L4 pfam00573
Ribosomal protein L4/L1 family; This family includes Ribosomal L4/L1 from eukaryotes and ...
 53-103 2.53e-05

Ribosomal protein L4/L1 family; This family includes Ribosomal L4/L1 from eukaryotes and archaebacteria and L4 from eubacteria. L4 from yeast has been shown to bind rRNA.


Pssm-ID: 425758  Cd Length: 190  Bit Score: 42.86  E-value: 2.53e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1835285470  53 YKHTKNKSKVYFSNKKIRVQKGLGKARLKNFKSPVCKQGACNFGP-----FYKENK 103
Cdd:pfam00573  32 THSTKTRSEVSGGGKKPWRQKGTGRARVGSIRSPQWRGGGVAFGPkprdySYKLNK 87
rplD PRK14907
50S ribosomal protein L4; Provisional
 56-123 2.05e-03

50S ribosomal protein L4; Provisional


Pssm-ID: 184900 [Multi-domain]  Cd Length: 295  Bit Score: 38.01  E-value: 2.05e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1835285470  56 TKNKSKVYFSNKKIRVQKGLGKARLKNFKSPVCKQGACNFGPFYKEN---KIISKINYRLIF--VYLLINKRS 123
Cdd:PRK14907  139 VKTRAEVSGTGKKPWRQKGTGRARAGSTRSPIFVGGGRAFGPTPERNyklKVNKKVRFNAFVsaLTLLANSKA 211
 
Name Accession Description Interval E-value
Ribosomal_L4 pfam00573
Ribosomal protein L4/L1 family; This family includes Ribosomal L4/L1 from eukaryotes and ...
 53-103 2.53e-05

Ribosomal protein L4/L1 family; This family includes Ribosomal L4/L1 from eukaryotes and archaebacteria and L4 from eubacteria. L4 from yeast has been shown to bind rRNA.


Pssm-ID: 425758  Cd Length: 190  Bit Score: 42.86  E-value: 2.53e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1835285470  53 YKHTKNKSKVYFSNKKIRVQKGLGKARLKNFKSPVCKQGACNFGP-----FYKENK 103
Cdd:pfam00573  32 THSTKTRSEVSGGGKKPWRQKGTGRARVGSIRSPQWRGGGVAFGPkprdySYKLNK 87
rplD PRK14907
50S ribosomal protein L4; Provisional
 56-123 2.05e-03

50S ribosomal protein L4; Provisional


Pssm-ID: 184900 [Multi-domain]  Cd Length: 295  Bit Score: 38.01  E-value: 2.05e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1835285470  56 TKNKSKVYFSNKKIRVQKGLGKARLKNFKSPVCKQGACNFGPFYKEN---KIISKINYRLIF--VYLLINKRS 123
Cdd:PRK14907  139 VKTRAEVSGTGKKPWRQKGTGRARAGSTRSPIFVGGGRAFGPTPERNyklKVNKKVRFNAFVsaLTLLANSKA 211
rpl4 CHL00147
ribosomal protein L4; Validated
 55-122 6.96e-03

ribosomal protein L4; Validated


Pssm-ID: 214375  Cd Length: 215  Bit Score: 36.14  E-value: 6.96e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1835285470  55 HTKNKSKVYFSNKKIRVQKGLGKARLKNFKSPVCKQGACNFGPfyKENKIISKIN---YRLIFVYLLINKR 122
Cdd:CHL00147   55 STKTRSEVRGGGRKPWKQKGTGRARAGSNRSPLWKGGGVIFGP--KPKTYSNKLNkkeRRLALRTLLYNKS 123
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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