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Conserved domains on  [gi|1835284403|gb|KAF4330440|]
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hypothetical protein CYL21_1525 [Plasmodium falciparum NF54]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MSCRAMM_ClfA super family cl41352
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-283 2.36e-14

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


The actual alignment was detected with superfamily member NF033609:

Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 77.26  E-value: 2.36e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  596 SDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 675

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  676 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 747
PspF super family cl34190
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ...
 412-602 1.85e-04

Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];


The actual alignment was detected with superfamily member COG1221:

Pssm-ID: 440834 [Multi-domain]  Cd Length: 835  Bit Score: 45.10  E-value: 1.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 412 ENDDELKNIESDDEQKWDFSEDEEDKSDSVEERNDVEHQ--KKIEEekddensnsgKWDFIRNKengwgilenqkermNF 489
Cdd:COG1221   374 ENREELDKLSEYLEEYLIISPDTEKKLISEEDEYELPYNfyEIIED----------KYEELKSE--------------GL 429

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 490 SEKDENRI--NLIELYFDNVYNYVDRKYENEDLISSEPEKVNVMKQEEEYNKNDDIDMNKYSKKDIGMFYLYQEELKNEG 567
Cdd:COG1221   430 SEEEINKIisKDIESYFKKLIFKLDKSNISEELLLIVVDEVIVNVVEIFEEAEKKLLRYNSSNLFIALSLHLLSTLLRIK 509

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1835284403 568 DKEELINKRDN-KRNKENDEDITIENDEQILNGNYE 602
Cdd:COG1221   510 KGKKIINPQLNeIKKKYYEEFILAAEAIKIIEEELK 545
 
Name Accession Description Interval E-value
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-283 2.36e-14

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 77.26  E-value: 2.36e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  596 SDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 675

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  676 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 747
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-314 3.69e-14

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 76.87  E-value: 3.69e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  690 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 769

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSDKENSYNEE 291
Cdd:NF033609  770 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 849

                         170       180
                  ....*....|....*....|...
gi 1835284403 292 YNNNGEEENFKREKYDKTIINNL 314
Cdd:NF033609  850 SDSDSDSESDSNSDSESGSNNNV 872
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-283 4.73e-14

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 76.49  E-value: 4.73e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  608 SDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 687

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  688 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 759
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-283 5.47e-14

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 76.10  E-value: 5.47e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  590 SGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 669

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  670 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 741
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-283 8.45e-14

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 75.72  E-value: 8.45e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  678 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 757

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  758 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 829
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-283 1.25e-13

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 74.95  E-value: 1.25e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  578 SGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSD 657

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  658 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 729
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-283 1.34e-13

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 74.95  E-value: 1.34e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  584 SDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSD 663

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  664 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 735
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-283 1.59e-13

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 74.56  E-value: 1.59e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  674 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 753

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  754 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 825
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-283 1.86e-13

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 74.56  E-value: 1.86e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  662 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 741

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  742 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 813
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 127-283 1.87e-13

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 74.56  E-value: 1.87e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 127 NKEDISDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDK 206
Cdd:NF033609  651 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 730

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1835284403 207 EDLSDKEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  731 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 807
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-283 2.28e-13

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 74.18  E-value: 2.28e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  684 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 763

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  764 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 835
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 127-283 2.36e-13

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 74.18  E-value: 2.36e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 127 NKEDISDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDK 206
Cdd:NF033609  675 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 754

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1835284403 207 EDLSDKEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  755 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 831
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-283 2.82e-13

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 73.79  E-value: 2.82e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  602 SDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 681

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEdlSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  682 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD--SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 751
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-283 3.07e-13

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 73.79  E-value: 3.07e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  668 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 747

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  748 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 819
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 151-283 6.54e-09

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 59.54  E-value: 6.54e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 151 DMENNNDKDDLSDMENNN-DKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSDKEDLSDKEDLSDKEDLSD 229
Cdd:NF033609  560 DSDSDPGSDSGSDSSNSDsGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASD 639

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1835284403 230 REDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  640 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 693
PspF COG1221
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ...
 412-602 1.85e-04

Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];


Pssm-ID: 440834 [Multi-domain]  Cd Length: 835  Bit Score: 45.10  E-value: 1.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 412 ENDDELKNIESDDEQKWDFSEDEEDKSDSVEERNDVEHQ--KKIEEekddensnsgKWDFIRNKengwgilenqkermNF 489
Cdd:COG1221   374 ENREELDKLSEYLEEYLIISPDTEKKLISEEDEYELPYNfyEIIED----------KYEELKSE--------------GL 429

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 490 SEKDENRI--NLIELYFDNVYNYVDRKYENEDLISSEPEKVNVMKQEEEYNKNDDIDMNKYSKKDIGMFYLYQEELKNEG 567
Cdd:COG1221   430 SEEEINKIisKDIESYFKKLIFKLDKSNISEELLLIVVDEVIVNVVEIFEEAEKKLLRYNSSNLFIALSLHLLSTLLRIK 509

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1835284403 568 DKEELINKRDN-KRNKENDEDITIENDEQILNGNYE 602
Cdd:COG1221   510 KGKKIINPQLNeIKKKYYEEFILAAEAIKIIEEELK 545
PTZ00482 PTZ00482
membrane-attack complex/perforin (MACPF) Superfamily; Provisional
 131-278 3.11e-04

membrane-attack complex/perforin (MACPF) Superfamily; Provisional


Pssm-ID: 240433 [Multi-domain]  Cd Length: 844  Bit Score: 44.47  E-value: 3.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 131 ISDREDLSDM-ENNND---KDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDK 206
Cdd:PTZ00482   80 LNQRKSLDDDdDDEFDflyEDDEDDAGNATSGESSTDDDSLLELPDRDEDADTQANNDQTNDFDQDDSSNSQTDQGLKQS 159

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1835284403 207 EDLSDKEDL--SDKEDLSDKEDLSDREDlcDKENLSDKE----DLSDMEYSNDKDDFSDMeySNDKDDFSDKEDINDR 278
Cdd:PTZ00482  160 VNLSSAEKLieEKKGQTENTFKFYNFGN--DGEEAAAKDggksKSSDPGPLNDSDGQGDD--GDPESAEEDKAASNTR 233
CobT2 COG4547
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ...
 149-232 7.65e-03

Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 443611 [Multi-domain]  Cd Length: 608  Bit Score: 39.78  E-value: 7.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 149 LSDMENnndKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSDKE---DLSDKEDLSDKE 225
Cdd:COG4547   202 LRDLDL---AEELGEDEDEEDEDDEDDSGEQEEDEEDGEDEDEESDEGAEAEDAEASGDDAEEGEseaAEAESDEMAEEA 278


                  ....*..
gi 1835284403 226 DLSDRED 232
Cdd:COG4547   279 EGEDSEE 285
 
Name Accession Description Interval E-value
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-283 2.36e-14

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 77.26  E-value: 2.36e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  596 SDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 675

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  676 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 747
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-314 3.69e-14

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 76.87  E-value: 3.69e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  690 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 769

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSDKENSYNEE 291
Cdd:NF033609  770 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 849

                         170       180
                  ....*....|....*....|...
gi 1835284403 292 YNNNGEEENFKREKYDKTIINNL 314
Cdd:NF033609  850 SDSDSDSESDSNSDSESGSNNNV 872
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-283 4.73e-14

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 76.49  E-value: 4.73e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  608 SDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 687

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  688 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 759
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-283 5.47e-14

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 76.10  E-value: 5.47e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  590 SGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 669

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  670 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 741
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-283 8.45e-14

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 75.72  E-value: 8.45e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  678 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 757

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  758 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 829
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-283 1.25e-13

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 74.95  E-value: 1.25e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  578 SGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSD 657

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  658 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 729
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-283 1.34e-13

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 74.95  E-value: 1.34e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  584 SDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSD 663

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  664 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 735
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-283 1.59e-13

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 74.56  E-value: 1.59e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  674 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 753

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  754 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 825
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-283 1.86e-13

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 74.56  E-value: 1.86e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  662 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 741

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  742 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 813
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 127-283 1.87e-13

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 74.56  E-value: 1.87e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 127 NKEDISDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDK 206
Cdd:NF033609  651 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 730

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1835284403 207 EDLSDKEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  731 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 807
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-283 2.28e-13

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 74.18  E-value: 2.28e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  684 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 763

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  764 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 835
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 127-283 2.36e-13

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 74.18  E-value: 2.36e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 127 NKEDISDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDK 206
Cdd:NF033609  675 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 754

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1835284403 207 EDLSDKEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  755 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 831
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-283 2.82e-13

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 73.79  E-value: 2.82e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  602 SDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 681

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEdlSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  682 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD--SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 751
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 132-283 3.07e-13

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 73.79  E-value: 3.07e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 132 SDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSD 211
Cdd:NF033609  668 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 747

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835284403 212 KEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  748 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 819
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 151-283 6.54e-09

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 59.54  E-value: 6.54e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 151 DMENNNDKDDLSDMENNN-DKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSDKEDLSDKEDLSDKEDLSD 229
Cdd:NF033609  560 DSDSDPGSDSGSDSSNSDsGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASD 639

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1835284403 230 REDLCDKENLSDKEDLSDMEYSNDKDDFSDMEYSNDKDDFSDKEDINDREDFSD 283
Cdd:NF033609  640 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 693
PspF COG1221
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ...
 412-602 1.85e-04

Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];


Pssm-ID: 440834 [Multi-domain]  Cd Length: 835  Bit Score: 45.10  E-value: 1.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 412 ENDDELKNIESDDEQKWDFSEDEEDKSDSVEERNDVEHQ--KKIEEekddensnsgKWDFIRNKengwgilenqkermNF 489
Cdd:COG1221   374 ENREELDKLSEYLEEYLIISPDTEKKLISEEDEYELPYNfyEIIED----------KYEELKSE--------------GL 429

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 490 SEKDENRI--NLIELYFDNVYNYVDRKYENEDLISSEPEKVNVMKQEEEYNKNDDIDMNKYSKKDIGMFYLYQEELKNEG 567
Cdd:COG1221   430 SEEEINKIisKDIESYFKKLIFKLDKSNISEELLLIVVDEVIVNVVEIFEEAEKKLLRYNSSNLFIALSLHLLSTLLRIK 509

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1835284403 568 DKEELINKRDN-KRNKENDEDITIENDEQILNGNYE 602
Cdd:COG1221   510 KGKKIINPQLNeIKKKYYEEFILAAEAIKIIEEELK 545
PTZ00482 PTZ00482
membrane-attack complex/perforin (MACPF) Superfamily; Provisional
 131-278 3.11e-04

membrane-attack complex/perforin (MACPF) Superfamily; Provisional


Pssm-ID: 240433 [Multi-domain]  Cd Length: 844  Bit Score: 44.47  E-value: 3.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 131 ISDREDLSDM-ENNND---KDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDK 206
Cdd:PTZ00482   80 LNQRKSLDDDdDDEFDflyEDDEDDAGNATSGESSTDDDSLLELPDRDEDADTQANNDQTNDFDQDDSSNSQTDQGLKQS 159

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1835284403 207 EDLSDKEDL--SDKEDLSDKEDLSDREDlcDKENLSDKE----DLSDMEYSNDKDDFSDMeySNDKDDFSDKEDINDR 278
Cdd:PTZ00482  160 VNLSSAEKLieEKKGQTENTFKFYNFGN--DGEEAAAKDggksKSSDPGPLNDSDGQGDD--GDPESAEEDKAASNTR 233
PHA03169 PHA03169
hypothetical protein; Provisional
 128-255 1.53e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 41.88  E-value: 1.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 128 KEDISDREDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKE 207
Cdd:PHA03169   84 KEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQP 163

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1835284403 208 DLSDKEDLSDKEDLSDKEDLSDREDLCDKENLSDKEDLSDMEYSNDKD 255
Cdd:PHA03169  164 SSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEP 211
CobT2 COG4547
Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; ...
 149-232 7.65e-03

Cobalamin biosynthesis cobaltochelatase CobT subunit [Coenzyme transport and metabolism]; Cobalamin biosynthesis cobaltochelatase CobT subunit is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 443611 [Multi-domain]  Cd Length: 608  Bit Score: 39.78  E-value: 7.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835284403 149 LSDMENnndKDDLSDMENNNDKDDLSDMENNNDKEDLSDKEDLSDKEDLSDREDLSDKEDLSDKE---DLSDKEDLSDKE 225
Cdd:COG4547   202 LRDLDL---AEELGEDEDEEDEDDEDDSGEQEEDEEDGEDEDEESDEGAEAEDAEASGDDAEEGEseaAEAESDEMAEEA 278


                  ....*..
gi 1835284403 226 DLSDRED 232
Cdd:COG4547   279 EGEDSEE 285
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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