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Conserved domains on  [gi|1833819278|gb|QJD07208|]
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ribosomal protein L23 [Apicomplexa sp. corallicolid ex Leiopathes glaberrima]

Protein Classification

uL23 family ribosomal protein( domain architecture ID 743)

uL23 family ribosomal protein such as bacteria 50S ribosomal protein L23, plant ribosomal protein L25, mitochondrial 39S ribosomal protein L23, and plastid 50S ribosomal protein L23

Gene Ontology:  GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L23 super family cl46680
Ribosomal protein L23;
18-80 8.53e-06

Ribosomal protein L23;


The actual alignment was detected with superfamily member pfam00276:

Pssm-ID: 459743  Cd Length: 86  Bit Score: 40.11  E-value: 8.53e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1833819278 18 YLTSKSYTQ-ENKSSYTFLVPRYMDKPIIKLYLTTFFNIKIKCIKSMNlkYRAKNKRF----------KKVIVK 80
Cdd:pfam00276  7 VITEKSTALmEKNNKYTFEVDPDANKTEIKKAVEKLFGVKVEKVNTLN--VKGKVKRFgrfvgrrsdwKKAIVT 78
 
Name Accession Description Interval E-value
Ribosomal_L23 pfam00276
Ribosomal protein L23;
18-80 8.53e-06

Ribosomal protein L23;


Pssm-ID: 459743  Cd Length: 86  Bit Score: 40.11  E-value: 8.53e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1833819278 18 YLTSKSYTQ-ENKSSYTFLVPRYMDKPIIKLYLTTFFNIKIKCIKSMNlkYRAKNKRF----------KKVIVK 80
Cdd:pfam00276  7 VITEKSTALmEKNNKYTFEVDPDANKTEIKKAVEKLFGVKVEKVNTLN--VKGKVKRFgrfvgrrsdwKKAIVT 78
rpl23 CHL00030
ribosomal protein L23
 19-86 7.16e-04

ribosomal protein L23


Pssm-ID: 176971  Cd Length: 93  Bit Score: 35.28  E-value: 7.16e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1833819278 19 LTSKSYTQENKSSYTFLVPRYMDKPIIKLYLTTFFNIKIKCIKSMNL--KYRAKNK------RFKKVIVKFNKNLS 86
Cdd:CHL00030   9 FTDKSIRLLEKNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLprKKRRMGPimghkmHYKRMIITLQPGYS 84
 
Name Accession Description Interval E-value
Ribosomal_L23 pfam00276
Ribosomal protein L23;
18-80 8.53e-06

Ribosomal protein L23;


Pssm-ID: 459743  Cd Length: 86  Bit Score: 40.11  E-value: 8.53e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1833819278 18 YLTSKSYTQ-ENKSSYTFLVPRYMDKPIIKLYLTTFFNIKIKCIKSMNlkYRAKNKRF----------KKVIVK 80
Cdd:pfam00276  7 VITEKSTALmEKNNKYTFEVDPDANKTEIKKAVEKLFGVKVEKVNTLN--VKGKVKRFgrfvgrrsdwKKAIVT 78
rpl23 CHL00030
ribosomal protein L23
 19-86 7.16e-04

ribosomal protein L23


Pssm-ID: 176971  Cd Length: 93  Bit Score: 35.28  E-value: 7.16e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1833819278 19 LTSKSYTQENKSSYTFLVPRYMDKPIIKLYLTTFFNIKIKCIKSMNL--KYRAKNK------RFKKVIVKFNKNLS 86
Cdd:CHL00030   9 FTDKSIRLLEKNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLprKKRRMGPimghkmHYKRMIITLQPGYS 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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