NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1832089670|ref|XP_033313952|]
View 

O-glucosyltransferase rumi homolog [Bombus bifarius]

Protein Classification

glycosyltransferase family protein( domain architecture ID 581341)

glycosyltransferase family protein may synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Glyco_transf_90 super family cl23835
Glycosyl transferase family 90; This family of glycosyl transferases are specifically ...
 67-402 6.08e-108

Glycosyl transferase family 90; This family of glycosyl transferases are specifically (mannosyl) glucuronoxylomannan/galactoxylomannan -beta 1,2-xylosyltransferases, EC:2.4.2.-.


The actual alignment was detected with superfamily member pfam05686:

Pssm-ID: 329112  Cd Length: 396  Bit Score: 323.27  E-value: 6.08e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832089670  67 CNNTNNGCYKDIIINDLKPFKKKGISKDLINIAKTR-GTVYQIIQGKLYRQK-DCMFPSR----CSGIEHFLLKLAPGLT 140
Cdd:pfam05686   1 SSSPTCPDYFRWIHEDLEPWRETGITREMVERAKRKaHFRYVIINGRVYVETyGESFQTRdvftIWGILQLLRKYPGRLP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832089670 141 DMDLVINVRDYPQSSKH-----FGGPLPIFSFSKTPEYYDITYPAWAFWeGGPAIslyprGLGRWDEHRVSLDKASKNTL 215
Cdd:pfam05686  81 DLELMFNCGDWPVVKKRdyrgpNANPPPLFSYCGDDDTLDIVFPDWSFW-GWPEV-----NIGRWDLLRKDLKEGNTRVK 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832089670 216 WEEKENKAFFRGSRTSSE-RDNLILLSRKKPNLVDAQYTKNqawksNEDTLYAAPASEVSLEAHCKYKYLFNYRGVAASF 294
Cdd:pfam05686 155 WEDREPYAYWRGNPSVAEtRLELVKCNRSNPEDWDARLTNQ-----DWDTEYRPGFKHSSLVDQCTHKYKIYIEGVAWSV 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832089670 295 RHKHLFLCRSLVFHVGDEWTEFYYNAMIPWIHYIPVSKDANQTVLGELIQFAIDNDEMSKKIADRGRDFIWNNLKLSDVT 374
Cdd:pfam05686 230 SLKYILACDSLVLHVGPEYYDFFYRGLKPWVHYWPIKSDDDCRDLKEAVDWGNAHDDEAQKIAERGSEFIRENLKMDDVY 309

                         330       340
                  ....*....|....*....|....*...
gi 1832089670 375 QSWKNLLKKYSKLLTYKTTLDKSLIKVE 402
Cdd:pfam05686 310 DYMFHLLTEYAKLLKYKPTVPKGAVEVC 337
 
Name Accession Description Interval E-value
Glyco_transf_90 pfam05686
Glycosyl transferase family 90; This family of glycosyl transferases are specifically ...
 67-402 6.08e-108

Glycosyl transferase family 90; This family of glycosyl transferases are specifically (mannosyl) glucuronoxylomannan/galactoxylomannan -beta 1,2-xylosyltransferases, EC:2.4.2.-.


Pssm-ID: 310354  Cd Length: 396  Bit Score: 323.27  E-value: 6.08e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832089670  67 CNNTNNGCYKDIIINDLKPFKKKGISKDLINIAKTR-GTVYQIIQGKLYRQK-DCMFPSR----CSGIEHFLLKLAPGLT 140
Cdd:pfam05686   1 SSSPTCPDYFRWIHEDLEPWRETGITREMVERAKRKaHFRYVIINGRVYVETyGESFQTRdvftIWGILQLLRKYPGRLP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832089670 141 DMDLVINVRDYPQSSKH-----FGGPLPIFSFSKTPEYYDITYPAWAFWeGGPAIslyprGLGRWDEHRVSLDKASKNTL 215
Cdd:pfam05686  81 DLELMFNCGDWPVVKKRdyrgpNANPPPLFSYCGDDDTLDIVFPDWSFW-GWPEV-----NIGRWDLLRKDLKEGNTRVK 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832089670 216 WEEKENKAFFRGSRTSSE-RDNLILLSRKKPNLVDAQYTKNqawksNEDTLYAAPASEVSLEAHCKYKYLFNYRGVAASF 294
Cdd:pfam05686 155 WEDREPYAYWRGNPSVAEtRLELVKCNRSNPEDWDARLTNQ-----DWDTEYRPGFKHSSLVDQCTHKYKIYIEGVAWSV 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832089670 295 RHKHLFLCRSLVFHVGDEWTEFYYNAMIPWIHYIPVSKDANQTVLGELIQFAIDNDEMSKKIADRGRDFIWNNLKLSDVT 374
Cdd:pfam05686 230 SLKYILACDSLVLHVGPEYYDFFYRGLKPWVHYWPIKSDDDCRDLKEAVDWGNAHDDEAQKIAERGSEFIRENLKMDDVY 309

                         330       340
                  ....*....|....*....|....*...
gi 1832089670 375 QSWKNLLKKYSKLLTYKTTLDKSLIKVE 402
Cdd:pfam05686 310 DYMFHLLTEYAKLLKYKPTVPKGAVEVC 337
CAP10 smart00672
Putative lipopolysaccharide-modifying enzyme;
138-391 5.55e-87

Putative lipopolysaccharide-modifying enzyme;


Pssm-ID: 214773  Cd Length: 256  Bit Score: 264.67  E-value: 5.55e-87
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832089670  138 GLTDMDLVINVRDYPQSSKHFG------GPLPIFSFSKTPEYYDITYPAWAFWEGgpaislYPRGLGR-WDEHRVSLDKA 210
Cdd:smart00672   1 RVPDLELMFNCRDWPLINKKSFasynqhAPPPLFSYCGSDEYLDIVFPDWSFWAG------WPEVNGRpWDKDLMELEEG 74

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832089670  211 SKNTLWEEKENKAFFRGSRTS-SERDNLILLSRKKPNLVDAQYTKNQAWKSNEDTLYAAPASEVSLEAHCKYKYLFNYRG 289
Cdd:smart00672  75 NKRTKWSDKNAYAYWRGNPTVaSERLDLIKCNQSSPELVNARITIQDWPGKCDGEEDAPGFKKSPLEEQCKHKYKINIEG 154

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832089670  290 VAASFRHKHLFLCRSLVFHVGDEWTEFYYNAMIPWIHYIPVSKDANQTVLGELIQFAIDNDEMSKKIADRGRDFIWNNLK 369
Cdd:smart00672 155 VAWSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIKSDLSCRELKEAVDWGNEHDKKAQEIGKRGSEFIQQNLS 234

                          250       260
                   ....*....|....*....|..
gi 1832089670  370 LSDVTQSWKNLLKKYSKLLTYK 391
Cdd:smart00672 235 MEDVYDYMFHLLQEYAKLLKYK 256
 
Name Accession Description Interval E-value
Glyco_transf_90 pfam05686
Glycosyl transferase family 90; This family of glycosyl transferases are specifically ...
 67-402 6.08e-108

Glycosyl transferase family 90; This family of glycosyl transferases are specifically (mannosyl) glucuronoxylomannan/galactoxylomannan -beta 1,2-xylosyltransferases, EC:2.4.2.-.


Pssm-ID: 310354  Cd Length: 396  Bit Score: 323.27  E-value: 6.08e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832089670  67 CNNTNNGCYKDIIINDLKPFKKKGISKDLINIAKTR-GTVYQIIQGKLYRQK-DCMFPSR----CSGIEHFLLKLAPGLT 140
Cdd:pfam05686   1 SSSPTCPDYFRWIHEDLEPWRETGITREMVERAKRKaHFRYVIINGRVYVETyGESFQTRdvftIWGILQLLRKYPGRLP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832089670 141 DMDLVINVRDYPQSSKH-----FGGPLPIFSFSKTPEYYDITYPAWAFWeGGPAIslyprGLGRWDEHRVSLDKASKNTL 215
Cdd:pfam05686  81 DLELMFNCGDWPVVKKRdyrgpNANPPPLFSYCGDDDTLDIVFPDWSFW-GWPEV-----NIGRWDLLRKDLKEGNTRVK 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832089670 216 WEEKENKAFFRGSRTSSE-RDNLILLSRKKPNLVDAQYTKNqawksNEDTLYAAPASEVSLEAHCKYKYLFNYRGVAASF 294
Cdd:pfam05686 155 WEDREPYAYWRGNPSVAEtRLELVKCNRSNPEDWDARLTNQ-----DWDTEYRPGFKHSSLVDQCTHKYKIYIEGVAWSV 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832089670 295 RHKHLFLCRSLVFHVGDEWTEFYYNAMIPWIHYIPVSKDANQTVLGELIQFAIDNDEMSKKIADRGRDFIWNNLKLSDVT 374
Cdd:pfam05686 230 SLKYILACDSLVLHVGPEYYDFFYRGLKPWVHYWPIKSDDDCRDLKEAVDWGNAHDDEAQKIAERGSEFIRENLKMDDVY 309

                         330       340
                  ....*....|....*....|....*...
gi 1832089670 375 QSWKNLLKKYSKLLTYKTTLDKSLIKVE 402
Cdd:pfam05686 310 DYMFHLLTEYAKLLKYKPTVPKGAVEVC 337
CAP10 smart00672
Putative lipopolysaccharide-modifying enzyme;
138-391 5.55e-87

Putative lipopolysaccharide-modifying enzyme;


Pssm-ID: 214773  Cd Length: 256  Bit Score: 264.67  E-value: 5.55e-87
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832089670  138 GLTDMDLVINVRDYPQSSKHFG------GPLPIFSFSKTPEYYDITYPAWAFWEGgpaislYPRGLGR-WDEHRVSLDKA 210
Cdd:smart00672   1 RVPDLELMFNCRDWPLINKKSFasynqhAPPPLFSYCGSDEYLDIVFPDWSFWAG------WPEVNGRpWDKDLMELEEG 74

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832089670  211 SKNTLWEEKENKAFFRGSRTS-SERDNLILLSRKKPNLVDAQYTKNQAWKSNEDTLYAAPASEVSLEAHCKYKYLFNYRG 289
Cdd:smart00672  75 NKRTKWSDKNAYAYWRGNPTVaSERLDLIKCNQSSPELVNARITIQDWPGKCDGEEDAPGFKKSPLEEQCKHKYKINIEG 154

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1832089670  290 VAASFRHKHLFLCRSLVFHVGDEWTEFYYNAMIPWIHYIPVSKDANQTVLGELIQFAIDNDEMSKKIADRGRDFIWNNLK 369
Cdd:smart00672 155 VAWSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIKSDLSCRELKEAVDWGNEHDKKAQEIGKRGSEFIQQNLS 234

                          250       260
                   ....*....|....*....|..
gi 1832089670  370 LSDVTQSWKNLLKKYSKLLTYK 391
Cdd:smart00672 235 MEDVYDYMFHLLQEYAKLLKYK 256
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH