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Conserved domains on  [gi|1830437548|gb|QIY95128|]
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carbohydrate ABC transporter permease [Streptomyces sp. S1D4-11]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 11417684)

carbohydrate ABC transporter permease, part of a periplasmic binding protein (PBP)-dependent ABC transporter may be involved in transport of one or more of a variety of mono-, di-, or polysaccharides, such as trehalose/maltose (MalG) and alginate (AlgM); responsible for translocation of the substrate across the membrane

Gene Ontology:  GO:0055085|GO:0008643
PubMed:  19234479|27273632
TCDB:  3.A.1.1.

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 24-300 8.41e-82

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 248.47  E-value: 8.41e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  24 RPGRKRRAWdeVPRWHIYLPLSLYLLFTLIPFYWILLFALRP-----AGSTSLVPWPMTFDHFDKVWNDRSFGTYFQNSV 98
Cdd:COG0395     3 ATARRRRRR--LGRILLYLLLILLALLFLFPLYWMVVTSFKPpaeifSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  99 LIAVATLVMTTLVALAGGYALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAELQMINSLGSVIIAETVFQLPLSM 178
Cdd:COG0395    81 IVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 179 ILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMFLSDQSKQTIPVGLNTLMS 258
Cdd:COG0395   161 FLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQG 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1830437548 259 SDSVDLGALAAGGIIAAVPVVIVFAFIQKWLITGFSAGAVKG 300
Cdd:COG0395   241 QYGTDWGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVKG 282
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 24-300 8.41e-82

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 248.47  E-value: 8.41e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  24 RPGRKRRAWdeVPRWHIYLPLSLYLLFTLIPFYWILLFALRP-----AGSTSLVPWPMTFDHFDKVWNDRSFGTYFQNSV 98
Cdd:COG0395     3 ATARRRRRR--LGRILLYLLLILLALLFLFPLYWMVVTSFKPpaeifSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  99 LIAVATLVMTTLVALAGGYALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAELQMINSLGSVIIAETVFQLPLSM 178
Cdd:COG0395    81 IVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 179 ILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMFLSDQSKQTIPVGLNTLMS 258
Cdd:COG0395   161 FLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQG 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1830437548 259 SDSVDLGALAAGGIIAAVPVVIVFAFIQKWLITGFSAGAVKG 300
Cdd:COG0395   241 QYGTDWGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVKG 282
malG PRK10998
maltose ABC transporter permease MalG;
38-300 6.32e-24

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 98.63  E-value: 6.32e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  38 WHIYLPLSLYLLFTLIPFYWILLFALRPA--GSTSLVPWPMTFDH------FDKVWNDRSFG-------TYFQNSVLIAV 102
Cdd:PRK10998   14 FATHLLLLGFIALIMFPLLMVIAISLREGnfATGSLIPEQISWEHwklalgFSVEHADGRVTpppfpvlLWLWNSVKVAG 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 103 ATLVMTTLVALAGGYALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAELQM------INSLGSVIIAeTVFQLPL 176
Cdd:PRK10998   94 ITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQyipfigLNTHGGVIFA-YLGGIAL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 177 SMILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMFLSDQSKQTIPVGLNTL 256
Cdd:PRK10998  173 HVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSYTLAVGMQQY 252

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1830437548 257 MSSDSVDLGALAAGGIIAAVPVVIVFAFIQKWLITGFSAGAVKG 300
Cdd:PRK10998  253 LNPQNYLWGDFAAAAVLSAIPITVVFLLAQRWLVGGLTAGGVKG 296
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 94-243 2.15e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 73.08  E-value: 2.15e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  94 FQNSVLIAVATLVMTTLVALAGGYALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAELQMINSLGS----VIIAE 169
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGlglpALILA 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1830437548 170 TVFQLPLSMILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMFLSD 243
Cdd:cd06261    81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 97-240 1.64e-12

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 65.34  E-value: 1.64e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  97 SVLIAVATLVMTTLVALAGGYALARFDFRIKR----GFMLALLCSQFVPGALLLV---------PLFQIFAeLQMINSLG 163
Cdd:TIGR02141   3 SLKVAVIATLLLLPLGIPVAWLLARSRFRGKPllevLVTLPLVLPPTVLGFYLLIafgpngpigKLLELFG-ISLVFTFT 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1830437548 164 SVIIAETVFQLPLSMILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMF 240
Cdd:TIGR02141  82 GAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMF 158
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 113-243 1.52e-08

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 53.46  E-value: 1.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 113 LAGGYALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAELQMINSLGSVIIAETVFQLPLSMILISGFIRNVPYSL 192
Cdd:pfam00528   3 PLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDL 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1830437548 193 EEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMFLSD 243
Cdd:pfam00528  83 VEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW 133
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 24-300 8.41e-82

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 248.47  E-value: 8.41e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  24 RPGRKRRAWdeVPRWHIYLPLSLYLLFTLIPFYWILLFALRP-----AGSTSLVPWPMTFDHFDKVWNDRSFGTYFQNSV 98
Cdd:COG0395     3 ATARRRRRR--LGRILLYLLLILLALLFLFPLYWMVVTSFKPpaeifSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  99 LIAVATLVMTTLVALAGGYALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAELQMINSLGSVIIAETVFQLPLSM 178
Cdd:COG0395    81 IVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 179 ILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMFLSDQSKQTIPVGLNTLMS 258
Cdd:COG0395   161 FLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQG 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1830437548 259 SDSVDLGALAAGGIIAAVPVVIVFAFIQKWLITGFSAGAVKG 300
Cdd:COG0395   241 QYGTDWGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVKG 282
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 27-300 3.24e-66

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 208.47  E-value: 3.24e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  27 RKRRAWDEVPRWHIYLPLSLYLLFTLIPFYWILLFALRPAGS---TSLVPWPMTFDHFDKVWNDRSFGTYFQNSVLIAVA 103
Cdd:COG3833     5 KSRKRRRRLKLGLRHLVLIILAIIALFPILWVVSASFNPGGSlysSSLIPENFTLENYKKLFTETPFLRWFLNSLIVAVV 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 104 TLVMTTLVALAGGYALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAELQMINSLGSVIIAETVFQLPLSMILISG 183
Cdd:COG3833    85 TAIISVFLAALAAYAFSRFRFKGRKAGLLALLLLQMFPAFLALVALYLLLSALGLLNTLLGLILVYLGGAIPFNTWLMKG 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 184 FIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMFLSDQSKQTIPVGLNTLMSSD-SV 262
Cdd:COG3833   165 YFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLLRSPENYTLAVGLYSFVSDQrNT 244

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1830437548 263 DLGALAAGGIIAAVPVVIVFAFIQKWLITGFSAGAVKG 300
Cdd:COG3833   245 NWGVFAAGAVLVAIPIVILFLFLQRYLVSGLTAGGVKG 282
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 37-253 5.83e-38

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 134.85  E-value: 5.83e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  37 RWHIYLPLSLYLLFTLIPFYWILLFALRPAGSTSLVPWPMTFDHFDKVWNDRSFGTYFQNSVLIAVATLVMTTLVALAGG 116
Cdd:COG1177     6 RLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 117 YALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAELQMINSLGSVIIAETVFQLPLSMILISGFIRNVPYSLEEAA 196
Cdd:COG1177    86 LALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAA 165

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1830437548 197 WVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALmFLSDQSKQTIPVGL 253
Cdd:COG1177   166 RDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITL-FLAGPGVTTLPVYI 221
malG PRK10998
maltose ABC transporter permease MalG;
38-300 6.32e-24

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 98.63  E-value: 6.32e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  38 WHIYLPLSLYLLFTLIPFYWILLFALRPA--GSTSLVPWPMTFDH------FDKVWNDRSFG-------TYFQNSVLIAV 102
Cdd:PRK10998   14 FATHLLLLGFIALIMFPLLMVIAISLREGnfATGSLIPEQISWEHwklalgFSVEHADGRVTpppfpvlLWLWNSVKVAG 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 103 ATLVMTTLVALAGGYALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAELQM------INSLGSVIIAeTVFQLPL 176
Cdd:PRK10998   94 ITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQyipfigLNTHGGVIFA-YLGGIAL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 177 SMILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMFLSDQSKQTIPVGLNTL 256
Cdd:PRK10998  173 HVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSYTLAVGMQQY 252

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1830437548 257 MSSDSVDLGALAAGGIIAAVPVVIVFAFIQKWLITGFSAGAVKG 300
Cdd:PRK10998  253 LNPQNYLWGDFAAAAVLSAIPITVVFLLAQRWLVGGLTAGGVKG 296
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
22-259 3.38e-22

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 96.38  E-value: 3.38e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  22 RERPGRKRRAWDevprwhiYLPLSLYLLFTLIPFYWILLFALRPAGSTSLvpwpmTFDHFDKVWNDRSFGTYFQNSVLIA 101
Cdd:COG1178   280 RVKLGRWRWLAL-------ALCLLLVLLGLLLPLLALLLWSLTKALDDNL-----TLDNYRFVLLDPSLLRALLNSLLLA 347

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 102 VATLVMTTLVALAGGYALARFDFRIKRGFMLALLCSQFVPGALL---LVPLFQIFAELQMINSLGSVIIAETVFQLPLSM 178
Cdd:COG1178   348 LLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLglgLLLLFNRPLPLLLYGTLAILVLAYVVRFLPFAL 427

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 179 ILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHfLFALMFLSDQSKQTIPVGLNTLMS 258
Cdd:COG1178   428 RSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKE-LSATLLLRPPGFETLAVLIYQLAS 506


                  .
gi 1830437548 259 S 259
Cdd:COG1178   507 S 507
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
29-230 1.60e-21

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 94.07  E-value: 1.60e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  29 RRAWDEVPRWHIYLPLSLYLLFTLIPFYWILLFALRPAgstslvpwpmtFDHFDKVWNDRSFGTYFQNSVLIAVATLVMT 108
Cdd:COG1178     2 STRPRRRPRLLLLLLALLLALLVLLPLLALLLRAFTDG-----------LANFWALLSDPYLWRALGNTLLLALLVTLLS 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 109 TLVALAGGYALARFDFRIKRGFMLALLCSQFVP---GALLLVPLFQ------------IFAELQMINSLGSVIIAETVFQ 173
Cdd:COG1178    71 LLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPpyvVALAWIALFGpngllntllralFGLEPPDIYGLGGIILVLVLFN 150

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1830437548 174 LPLSMILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHA 230
Cdd:COG1178   151 YPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLC 207
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 36-228 3.51e-19

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 85.20  E-value: 3.51e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  36 PRWHIYLPLSLYLLFTLIPFYWILLFALRPAGSTSLVPWPMTFDHFDKVWNDRSFGTYFQNSVLIAVATLVMTTLVALAG 115
Cdd:COG1176    11 PLLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPI 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 116 GYALARFDFRIKRGFMLALLCSQFVPGAL-----------------LLVPLFQIFAELQMINSLGSVIIAETVFQLPLSM 178
Cdd:COG1176    91 AYFLARAPPRWRNLLLLLVILPFWTSFLVrtyawivllgrngllnsLLLALGLIDEPLRLLYTEFAVVIGLVYVYLPFMV 170

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1830437548 179 ILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFV 228
Cdd:COG1176   171 LPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFI 220
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 94-243 2.15e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 73.08  E-value: 2.15e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  94 FQNSVLIAVATLVMTTLVALAGGYALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAELQMINSLGS----VIIAE 169
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGlglpALILA 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1830437548 170 TVFQLPLSMILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMFLSD 243
Cdd:cd06261    81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 43-227 7.71e-14

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 69.78  E-value: 7.71e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  43 PLSLYLLFTLIPFYWILLFALRPAGSTSLVPWPMTFDHFDKVWNDRSFGTYFQNSVLIAVATLVMTTLVALAGGYALARF 122
Cdd:COG0555     5 VLPGFGLTLGLTLLYLSLIVLLPLAALVLKAAGLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRY 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 123 DFRIKR-----------------GFMLALLCSQfvPGAL--LLVPLfqifaELQMINSLGSVIIAETVFQLPLSMILISG 183
Cdd:COG0555    85 RFPGKRlvdalvdlpfalptavaGIALLLLFGP--NGWLgqLLAPL-----GIKVAFTPLGIVLAQTFVSLPFVVRTVQP 157

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1830437548 184 FIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAF 227
Cdd:COG0555   158 VLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAF 201
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
70-292 2.52e-13

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 68.61  E-value: 2.52e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  70 SLVPWPMTFDHFDKVW------NDRSFGTYFQNSVLIAVATLVMTTLVALAGGYALARFDFRIKRGFMLALLCSQFVPGA 143
Cdd:PRK10973   47 TLIPGTHLLENIANIWvngvgnNSAPFGRMLLNSFVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVE 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 144 LLLVPLFQIFAELQMINSLgsviiaeTVFQLPL-----SMILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPG 218
Cdd:PRK10973  127 VRIFPTVEVIANLKMLDSY-------AGLTLPLmasatATFLFRQFFMTLPDELVEAARIDGASPMRFFWDIVLPLSKTN 199

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1830437548 219 LIAVGSFAFVHAWNHFLFALMFLSDQSKQTIPVGLNTLMSSD--SVDLGALAAGGIIAAVPVVIVFAFIQKWLITG 292
Cdd:PRK10973  200 LAALFVITFIYGWNQYLWPLLIITDVSLGTAVAGIKGMIATGegTTEWNQVMAAMLLTLIPPVVIVLAMQRAFVRG 275
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
22-234 9.17e-13

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 67.08  E-value: 9.17e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  22 RERPGRKRRAWdeVPRWHIYLPLSLYLLFTLIPFYWILLFALRpagSTSLVPWPMTF---DHFDKVWNDRSFGTYFQNSV 98
Cdd:COG1175     8 AARRRRRRRRL--AAYLFLLPALLLLLVFVLYPLLYTLYLSFT---DWNLLGPPPEFvglDNYARLFTDPRFWNALGNTL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  99 LIAVATLVMTTLVALAGGYALARfDFRIKRGFMLALLCSQFVPGA-------LLLVPLFQIFAelQMINSLG-------- 163
Cdd:COG1175    83 LFTVVSVPLQLVLGLLLALLLNR-KLRGRGFFRTLFFLPWVISPVvvaliwkWLFNPDYGLLN--ALLGALGlepinwlg 159

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1830437548 164 -------SVIIAETVFQLPLSMILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHF 234
Cdd:COG1175   160 dpslalpAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVF 237
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 97-240 1.64e-12

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 65.34  E-value: 1.64e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  97 SVLIAVATLVMTTLVALAGGYALARFDFRIKR----GFMLALLCSQFVPGALLLV---------PLFQIFAeLQMINSLG 163
Cdd:TIGR02141   3 SLKVAVIATLLLLPLGIPVAWLLARSRFRGKPllevLVTLPLVLPPTVLGFYLLIafgpngpigKLLELFG-ISLVFTFT 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1830437548 164 SVIIAETVFQLPLSMILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMF 240
Cdd:TIGR02141  82 GAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMF 158
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 113-243 1.52e-08

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 53.46  E-value: 1.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 113 LAGGYALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAELQMINSLGSVIIAETVFQLPLSMILISGFIRNVPYSL 192
Cdd:pfam00528   3 PLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDL 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1830437548 193 EEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMFLSD 243
Cdd:pfam00528  83 VEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW 133
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 78-234 5.82e-07

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 50.45  E-value: 5.82e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  78 FDHFDKVWNDRSFGTYFQNSVLIAVATLVMTTLVALAGGYALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAE-- 155
Cdd:TIGR03262  40 LANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNqg 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 156 -------LQMINSLGSVIIAETVFQLPLS-MILISGFiRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAF 227
Cdd:TIGR03262 120 llkgllgGFSIYGFWGIVIGEVFYTFPHAlMILVTAL-SLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVF 198


                  ....*..
gi 1830437548 228 VHAWNHF 234
Cdd:TIGR03262 199 TLVITDF 205
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 77-221 1.55e-06

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 48.44  E-value: 1.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  77 TFDHFDKVWNDRSFGTYFQNSVLIAVATLVMTTLVALAGGYALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAEL 156
Cdd:PRK09500   42 TTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLL 121

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1830437548 157 QMINSLGSVIIAETVFQLPLSMILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIA 221
Cdd:PRK09500  122 GIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAA 186
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 25-251 8.12e-06

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 46.54  E-value: 8.12e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  25 PGRKRRAWdevPRWH-IYLPLSLYLLFTLIPFYWILLFALRPAGSTSLVPWPMTFDhfdkvwnDRSFGTYFQNSVLIAVA 103
Cdd:PRK15050   15 AARRRRRL---RPLLwLLLPLLVLAPLVVYPLVRVVLQSLTGEHGLGLATYRAVLG-------SPDFRGALLTTLQIAFA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 104 T----LVMTTLVAL-------AGGYALARF-DFRIKRGFMLALLCSQFVPGA-----LLLVPLFQIFA-ELQMINSLGSV 165
Cdd:PRK15050   85 StagcLVLGVLLALvlafvpfPGASLVGRFiDTFVAFPSFLITLAFTFLYGSagsvnIALQRLFGLEApPLDFLYSPGGV 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 166 IIAETVFQLPLSMILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALmFLSDQS 245
Cdd:PRK15050  165 ILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVL-FTGAKD 243


                  ....*.
gi 1830437548 246 KQTIPV 251
Cdd:PRK15050  244 VVTLPV 249
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 48-221 2.19e-05

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 45.06  E-value: 2.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  48 LLFTLIPFYWILLFALRPAGSTSLVPWPMTFDHFDKVWNDRSFGTYFQNSVLIAVATLVmttlvALAGGYALARFDFRIK 127
Cdd:PRK09497   20 VLFVFLPNLMIIGTSFLTRDDANFVKMVFTLDNYTRLLDPLYAEVLLHSLNMALIATLA-----CLVLGYPFAWFLAKLP 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 128 ---RGFMLALLCSQFVPGALLLVPLFQIF------------------AELQMINSLGSVIIAETVFQLPLSMILISGFIR 186
Cdd:PRK09497   95 hkvRPLLLFLLIVPFWTNSLIRIYGLKIFlstkgylnefllwlgvidTPIRIMFTESAVIIGLVYILLPFMVLPLYSSIE 174

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1830437548 187 NVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIA 221
Cdd:PRK09497  175 KLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIA 209
cysT CHL00187
sulfate transport protein; Provisional
 40-227 2.85e-03

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 38.46  E-value: 2.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548  40 IYLPLSLYLLFTLI-PFYWILLFAlrpagstSLVPWpmtFDHFDKVWNDRSFGTYfQNSVLIAVATLVMTTLVALAGGYA 118
Cdd:CHL00187   13 IYIISLSYIIFLLVlPILALLIKA-------SQQPW---SDFLQKATEPIALSAY-SLTLSMALIAALINGFFGLLIAWV 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 119 LARFDFRIKRgFMLALLCSQF-----VPGALL---------LVPLFQIFAeLQMINSLGSVIIAETVFQLPLSMILISGF 184
Cdd:CHL00187   82 LVRYNFPGKR-LLDAAVDLPFalptsVAGLTLatvygdngwIGHLLSHLG-IQIVFTKLGVLLAMIFVSFPFVVRTIQPV 159

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1830437548 185 IRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAF 227
Cdd:CHL00187  160 LQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTF 202
modB PRK09421
molybdate ABC transporter permease subunit;
102-257 4.53e-03

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 37.59  E-value: 4.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 102 VATLVMTTLvALAGGYALARFDFRIKRGF----MLALLCSQFVPGALLLV----------PLFQIFaELQMINSLGSVII 167
Cdd:PRK09421   20 VAVLFSLPF-GILVAWLLARCRFPGKSLLdsllHLPLVLPPVVTGYLLLIsmgrrgfigqWLYEWF-GISFAFSWRGAAL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 168 AETVFQLPLSMILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMFLSD--QS 245
Cdd:PRK09421   98 AAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFGATITFVSNipGE 177

                         170
                  ....*....|..
gi 1830437548 246 KQTIPVGLNTLM 257
Cdd:PRK09421  178 TQTIPSAMYTLI 189
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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