|
Name |
Accession |
Description |
Interval |
E-value |
| UgpE |
COG0395 |
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ... |
24-300 |
8.41e-82 |
|
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440164 [Multi-domain] Cd Length: 282 Bit Score: 248.47 E-value: 8.41e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 24 RPGRKRRAWdeVPRWHIYLPLSLYLLFTLIPFYWILLFALRP-----AGSTSLVPWPMTFDHFDKVWNDRSFGTYFQNSV 98
Cdd:COG0395 3 ATARRRRRR--LGRILLYLLLILLALLFLFPLYWMVVTSFKPpaeifSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 99 LIAVATLVMTTLVALAGGYALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAELQMINSLGSVIIAETVFQLPLSM 178
Cdd:COG0395 81 IVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 179 ILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMFLSDQSKQTIPVGLNTLMS 258
Cdd:COG0395 161 FLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQG 240
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1830437548 259 SDSVDLGALAAGGIIAAVPVVIVFAFIQKWLITGFSAGAVKG 300
Cdd:COG0395 241 QYGTDWGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVKG 282
|
|
| malG |
PRK10998 |
maltose ABC transporter permease MalG; |
38-300 |
6.32e-24 |
|
maltose ABC transporter permease MalG;
Pssm-ID: 182891 Cd Length: 296 Bit Score: 98.63 E-value: 6.32e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 38 WHIYLPLSLYLLFTLIPFYWILLFALRPA--GSTSLVPWPMTFDH------FDKVWNDRSFG-------TYFQNSVLIAV 102
Cdd:PRK10998 14 FATHLLLLGFIALIMFPLLMVIAISLREGnfATGSLIPEQISWEHwklalgFSVEHADGRVTpppfpvlLWLWNSVKVAG 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 103 ATLVMTTLVALAGGYALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAELQM------INSLGSVIIAeTVFQLPL 176
Cdd:PRK10998 94 ITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQyipfigLNTHGGVIFA-YLGGIAL 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 177 SMILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMFLSDQSKQTIPVGLNTL 256
Cdd:PRK10998 173 HVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSYTLAVGMQQY 252
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1830437548 257 MSSDSVDLGALAAGGIIAAVPVVIVFAFIQKWLITGFSAGAVKG 300
Cdd:PRK10998 253 LNPQNYLWGDFAAAAVLSAIPITVVFLLAQRWLVGGLTAGGVKG 296
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
94-243 |
2.15e-15 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 73.08 E-value: 2.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 94 FQNSVLIAVATLVMTTLVALAGGYALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAELQMINSLGS----VIIAE 169
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGlglpALILA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1830437548 170 TVFQLPLSMILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMFLSD 243
Cdd:cd06261 81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154
|
|
| modB_ABC |
TIGR02141 |
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ... |
97-240 |
1.64e-12 |
|
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]
Pssm-ID: 273993 [Multi-domain] Cd Length: 208 Bit Score: 65.34 E-value: 1.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 97 SVLIAVATLVMTTLVALAGGYALARFDFRIKR----GFMLALLCSQFVPGALLLV---------PLFQIFAeLQMINSLG 163
Cdd:TIGR02141 3 SLKVAVIATLLLLPLGIPVAWLLARSRFRGKPllevLVTLPLVLPPTVLGFYLLIafgpngpigKLLELFG-ISLVFTFT 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1830437548 164 SVIIAETVFQLPLSMILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMF 240
Cdd:TIGR02141 82 GAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMF 158
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
113-243 |
1.52e-08 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 53.46 E-value: 1.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 113 LAGGYALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAELQMINSLGSVIIAETVFQLPLSMILISGFIRNVPYSL 192
Cdd:pfam00528 3 PLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1830437548 193 EEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMFLSD 243
Cdd:pfam00528 83 VEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW 133
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| UgpE |
COG0395 |
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ... |
24-300 |
8.41e-82 |
|
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440164 [Multi-domain] Cd Length: 282 Bit Score: 248.47 E-value: 8.41e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 24 RPGRKRRAWdeVPRWHIYLPLSLYLLFTLIPFYWILLFALRP-----AGSTSLVPWPMTFDHFDKVWNDRSFGTYFQNSV 98
Cdd:COG0395 3 ATARRRRRR--LGRILLYLLLILLALLFLFPLYWMVVTSFKPpaeifSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 99 LIAVATLVMTTLVALAGGYALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAELQMINSLGSVIIAETVFQLPLSM 178
Cdd:COG0395 81 IVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 179 ILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMFLSDQSKQTIPVGLNTLMS 258
Cdd:COG0395 161 FLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQG 240
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1830437548 259 SDSVDLGALAAGGIIAAVPVVIVFAFIQKWLITGFSAGAVKG 300
Cdd:COG0395 241 QYGTDWGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVKG 282
|
|
| MalG |
COG3833 |
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ... |
27-300 |
3.24e-66 |
|
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];
Pssm-ID: 443045 [Multi-domain] Cd Length: 282 Bit Score: 208.47 E-value: 3.24e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 27 RKRRAWDEVPRWHIYLPLSLYLLFTLIPFYWILLFALRPAGS---TSLVPWPMTFDHFDKVWNDRSFGTYFQNSVLIAVA 103
Cdd:COG3833 5 KSRKRRRRLKLGLRHLVLIILAIIALFPILWVVSASFNPGGSlysSSLIPENFTLENYKKLFTETPFLRWFLNSLIVAVV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 104 TLVMTTLVALAGGYALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAELQMINSLGSVIIAETVFQLPLSMILISG 183
Cdd:COG3833 85 TAIISVFLAALAAYAFSRFRFKGRKAGLLALLLLQMFPAFLALVALYLLLSALGLLNTLLGLILVYLGGAIPFNTWLMKG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 184 FIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMFLSDQSKQTIPVGLNTLMSSD-SV 262
Cdd:COG3833 165 YFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLLRSPENYTLAVGLYSFVSDQrNT 244
|
250 260 270
....*....|....*....|....*....|....*...
gi 1830437548 263 DLGALAAGGIIAAVPVVIVFAFIQKWLITGFSAGAVKG 300
Cdd:COG3833 245 NWGVFAAGAVLVAIPIVILFLFLQRYLVSGLTAGGVKG 282
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
37-253 |
5.83e-38 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 134.85 E-value: 5.83e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 37 RWHIYLPLSLYLLFTLIPFYWILLFALRPAGSTSLVPWPMTFDHFDKVWNDRSFGTYFQNSVLIAVATLVMTTLVALAGG 116
Cdd:COG1177 6 RLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 117 YALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAELQMINSLGSVIIAETVFQLPLSMILISGFIRNVPYSLEEAA 196
Cdd:COG1177 86 LALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAA 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1830437548 197 WVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALmFLSDQSKQTIPVGL 253
Cdd:COG1177 166 RDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITL-FLAGPGVTTLPVYI 221
|
|
| malG |
PRK10998 |
maltose ABC transporter permease MalG; |
38-300 |
6.32e-24 |
|
maltose ABC transporter permease MalG;
Pssm-ID: 182891 Cd Length: 296 Bit Score: 98.63 E-value: 6.32e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 38 WHIYLPLSLYLLFTLIPFYWILLFALRPA--GSTSLVPWPMTFDH------FDKVWNDRSFG-------TYFQNSVLIAV 102
Cdd:PRK10998 14 FATHLLLLGFIALIMFPLLMVIAISLREGnfATGSLIPEQISWEHwklalgFSVEHADGRVTpppfpvlLWLWNSVKVAG 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 103 ATLVMTTLVALAGGYALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAELQM------INSLGSVIIAeTVFQLPL 176
Cdd:PRK10998 94 ITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQyipfigLNTHGGVIFA-YLGGIAL 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 177 SMILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMFLSDQSKQTIPVGLNTL 256
Cdd:PRK10998 173 HVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSYTLAVGMQQY 252
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1830437548 257 MSSDSVDLGALAAGGIIAAVPVVIVFAFIQKWLITGFSAGAVKG 300
Cdd:PRK10998 253 LNPQNYLWGDFAAAAVLSAIPITVVFLLAQRWLVGGLTAGGVKG 296
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
22-259 |
3.38e-22 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 96.38 E-value: 3.38e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 22 RERPGRKRRAWDevprwhiYLPLSLYLLFTLIPFYWILLFALRPAGSTSLvpwpmTFDHFDKVWNDRSFGTYFQNSVLIA 101
Cdd:COG1178 280 RVKLGRWRWLAL-------ALCLLLVLLGLLLPLLALLLWSLTKALDDNL-----TLDNYRFVLLDPSLLRALLNSLLLA 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 102 VATLVMTTLVALAGGYALARFDFRIKRGFMLALLCSQFVPGALL---LVPLFQIFAELQMINSLGSVIIAETVFQLPLSM 178
Cdd:COG1178 348 LLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLglgLLLLFNRPLPLLLYGTLAILVLAYVVRFLPFAL 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 179 ILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHfLFALMFLSDQSKQTIPVGLNTLMS 258
Cdd:COG1178 428 RSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKE-LSATLLLRPPGFETLAVLIYQLAS 506
|
.
gi 1830437548 259 S 259
Cdd:COG1178 507 S 507
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
29-230 |
1.60e-21 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 94.07 E-value: 1.60e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 29 RRAWDEVPRWHIYLPLSLYLLFTLIPFYWILLFALRPAgstslvpwpmtFDHFDKVWNDRSFGTYFQNSVLIAVATLVMT 108
Cdd:COG1178 2 STRPRRRPRLLLLLLALLLALLVLLPLLALLLRAFTDG-----------LANFWALLSDPYLWRALGNTLLLALLVTLLS 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 109 TLVALAGGYALARFDFRIKRGFMLALLCSQFVP---GALLLVPLFQ------------IFAELQMINSLGSVIIAETVFQ 173
Cdd:COG1178 71 LLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPpyvVALAWIALFGpngllntllralFGLEPPDIYGLGGIILVLVLFN 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1830437548 174 LPLSMILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHA 230
Cdd:COG1178 151 YPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLC 207
|
|
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
36-228 |
3.51e-19 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 85.20 E-value: 3.51e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 36 PRWHIYLPLSLYLLFTLIPFYWILLFALRPAGSTSLVPWPMTFDHFDKVWNDRSFGTYFQNSVLIAVATLVMTTLVALAG 115
Cdd:COG1176 11 PLLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 116 GYALARFDFRIKRGFMLALLCSQFVPGAL-----------------LLVPLFQIFAELQMINSLGSVIIAETVFQLPLSM 178
Cdd:COG1176 91 AYFLARAPPRWRNLLLLLVILPFWTSFLVrtyawivllgrngllnsLLLALGLIDEPLRLLYTEFAVVIGLVYVYLPFMV 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1830437548 179 ILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFV 228
Cdd:COG1176 171 LPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFI 220
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
94-243 |
2.15e-15 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 73.08 E-value: 2.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 94 FQNSVLIAVATLVMTTLVALAGGYALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAELQMINSLGS----VIIAE 169
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGlglpALILA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1830437548 170 TVFQLPLSMILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMFLSD 243
Cdd:cd06261 81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
43-227 |
7.71e-14 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 69.78 E-value: 7.71e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 43 PLSLYLLFTLIPFYWILLFALRPAGSTSLVPWPMTFDHFDKVWNDRSFGTYFQNSVLIAVATLVMTTLVALAGGYALARF 122
Cdd:COG0555 5 VLPGFGLTLGLTLLYLSLIVLLPLAALVLKAAGLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 123 DFRIKR-----------------GFMLALLCSQfvPGAL--LLVPLfqifaELQMINSLGSVIIAETVFQLPLSMILISG 183
Cdd:COG0555 85 RFPGKRlvdalvdlpfalptavaGIALLLLFGP--NGWLgqLLAPL-----GIKVAFTPLGIVLAQTFVSLPFVVRTVQP 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1830437548 184 FIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAF 227
Cdd:COG0555 158 VLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAF 201
|
|
| PRK10973 |
PRK10973 |
sn-glycerol-3-phosphate ABC transporter permease UgpE; |
70-292 |
2.52e-13 |
|
sn-glycerol-3-phosphate ABC transporter permease UgpE;
Pssm-ID: 182875 [Multi-domain] Cd Length: 281 Bit Score: 68.61 E-value: 2.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 70 SLVPWPMTFDHFDKVW------NDRSFGTYFQNSVLIAVATLVMTTLVALAGGYALARFDFRIKRGFMLALLCSQFVPGA 143
Cdd:PRK10973 47 TLIPGTHLLENIANIWvngvgnNSAPFGRMLLNSFVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVE 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 144 LLLVPLFQIFAELQMINSLgsviiaeTVFQLPL-----SMILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPG 218
Cdd:PRK10973 127 VRIFPTVEVIANLKMLDSY-------AGLTLPLmasatATFLFRQFFMTLPDELVEAARIDGASPMRFFWDIVLPLSKTN 199
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1830437548 219 LIAVGSFAFVHAWNHFLFALMFLSDQSKQTIPVGLNTLMSSD--SVDLGALAAGGIIAAVPVVIVFAFIQKWLITG 292
Cdd:PRK10973 200 LAALFVITFIYGWNQYLWPLLIITDVSLGTAVAGIKGMIATGegTTEWNQVMAAMLLTLIPPVVIVLAMQRAFVRG 275
|
|
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
22-234 |
9.17e-13 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 67.08 E-value: 9.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 22 RERPGRKRRAWdeVPRWHIYLPLSLYLLFTLIPFYWILLFALRpagSTSLVPWPMTF---DHFDKVWNDRSFGTYFQNSV 98
Cdd:COG1175 8 AARRRRRRRRL--AAYLFLLPALLLLLVFVLYPLLYTLYLSFT---DWNLLGPPPEFvglDNYARLFTDPRFWNALGNTL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 99 LIAVATLVMTTLVALAGGYALARfDFRIKRGFMLALLCSQFVPGA-------LLLVPLFQIFAelQMINSLG-------- 163
Cdd:COG1175 83 LFTVVSVPLQLVLGLLLALLLNR-KLRGRGFFRTLFFLPWVISPVvvaliwkWLFNPDYGLLN--ALLGALGlepinwlg 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1830437548 164 -------SVIIAETVFQLPLSMILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHF 234
Cdd:COG1175 160 dpslalpAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVF 237
|
|
| modB_ABC |
TIGR02141 |
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ... |
97-240 |
1.64e-12 |
|
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]
Pssm-ID: 273993 [Multi-domain] Cd Length: 208 Bit Score: 65.34 E-value: 1.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 97 SVLIAVATLVMTTLVALAGGYALARFDFRIKR----GFMLALLCSQFVPGALLLV---------PLFQIFAeLQMINSLG 163
Cdd:TIGR02141 3 SLKVAVIATLLLLPLGIPVAWLLARSRFRGKPllevLVTLPLVLPPTVLGFYLLIafgpngpigKLLELFG-ISLVFTFT 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1830437548 164 SVIIAETVFQLPLSMILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMF 240
Cdd:TIGR02141 82 GAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMF 158
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
113-243 |
1.52e-08 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 53.46 E-value: 1.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 113 LAGGYALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAELQMINSLGSVIIAETVFQLPLSMILISGFIRNVPYSL 192
Cdd:pfam00528 3 PLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1830437548 193 EEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMFLSD 243
Cdd:pfam00528 83 VEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW 133
|
|
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
78-234 |
5.82e-07 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 50.45 E-value: 5.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 78 FDHFDKVWNDRSFGTYFQNSVLIAVATLVMTTLVALAGGYALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAE-- 155
Cdd:TIGR03262 40 LANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNqg 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 156 -------LQMINSLGSVIIAETVFQLPLS-MILISGFiRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAF 227
Cdd:TIGR03262 120 llkgllgGFSIYGFWGIVIGEVFYTFPHAlMILVTAL-SLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVF 198
|
....*..
gi 1830437548 228 VHAWNHF 234
Cdd:TIGR03262 199 TLVITDF 205
|
|
| potC |
PRK09500 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
77-221 |
1.55e-06 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 236542 [Multi-domain] Cd Length: 256 Bit Score: 48.44 E-value: 1.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 77 TFDHFDKVWNDRSFGTYFQNSVLIAVATLVMTTLVALAGGYALARFDFRIKRGFMLALLCSQFVPGALLLVPLFQIFAEL 156
Cdd:PRK09500 42 TTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLL 121
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1830437548 157 QMINSLGSVIIAETVFQLPLSMILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIA 221
Cdd:PRK09500 122 GIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAA 186
|
|
| PRK15050 |
PRK15050 |
2-aminoethylphosphonate transport system permease PhnU; Provisional |
25-251 |
8.12e-06 |
|
2-aminoethylphosphonate transport system permease PhnU; Provisional
Pssm-ID: 237888 [Multi-domain] Cd Length: 296 Bit Score: 46.54 E-value: 8.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 25 PGRKRRAWdevPRWH-IYLPLSLYLLFTLIPFYWILLFALRPAGSTSLVPWPMTFDhfdkvwnDRSFGTYFQNSVLIAVA 103
Cdd:PRK15050 15 AARRRRRL---RPLLwLLLPLLVLAPLVVYPLVRVVLQSLTGEHGLGLATYRAVLG-------SPDFRGALLTTLQIAFA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 104 T----LVMTTLVAL-------AGGYALARF-DFRIKRGFMLALLCSQFVPGA-----LLLVPLFQIFA-ELQMINSLGSV 165
Cdd:PRK15050 85 StagcLVLGVLLALvlafvpfPGASLVGRFiDTFVAFPSFLITLAFTFLYGSagsvnIALQRLFGLEApPLDFLYSPGGV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 166 IIAETVFQLPLSMILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALmFLSDQS 245
Cdd:PRK15050 165 ILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVL-FTGAKD 243
|
....*.
gi 1830437548 246 KQTIPV 251
Cdd:PRK15050 244 VVTLPV 249
|
|
| potB |
PRK09497 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
48-221 |
2.19e-05 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 181910 Cd Length: 285 Bit Score: 45.06 E-value: 2.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 48 LLFTLIPFYWILLFALRPAGSTSLVPWPMTFDHFDKVWNDRSFGTYFQNSVLIAVATLVmttlvALAGGYALARFDFRIK 127
Cdd:PRK09497 20 VLFVFLPNLMIIGTSFLTRDDANFVKMVFTLDNYTRLLDPLYAEVLLHSLNMALIATLA-----CLVLGYPFAWFLAKLP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 128 ---RGFMLALLCSQFVPGALLLVPLFQIF------------------AELQMINSLGSVIIAETVFQLPLSMILISGFIR 186
Cdd:PRK09497 95 hkvRPLLLFLLIVPFWTNSLIRIYGLKIFlstkgylnefllwlgvidTPIRIMFTESAVIIGLVYILLPFMVLPLYSSIE 174
|
170 180 190
....*....|....*....|....*....|....*
gi 1830437548 187 NVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIA 221
Cdd:PRK09497 175 KLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIA 209
|
|
| cysT |
CHL00187 |
sulfate transport protein; Provisional |
40-227 |
2.85e-03 |
|
sulfate transport protein; Provisional
Pssm-ID: 214388 [Multi-domain] Cd Length: 237 Bit Score: 38.46 E-value: 2.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 40 IYLPLSLYLLFTLI-PFYWILLFAlrpagstSLVPWpmtFDHFDKVWNDRSFGTYfQNSVLIAVATLVMTTLVALAGGYA 118
Cdd:CHL00187 13 IYIISLSYIIFLLVlPILALLIKA-------SQQPW---SDFLQKATEPIALSAY-SLTLSMALIAALINGFFGLLIAWV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 119 LARFDFRIKRgFMLALLCSQF-----VPGALL---------LVPLFQIFAeLQMINSLGSVIIAETVFQLPLSMILISGF 184
Cdd:CHL00187 82 LVRYNFPGKR-LLDAAVDLPFalptsVAGLTLatvygdngwIGHLLSHLG-IQIVFTKLGVLLAMIFVSFPFVVRTIQPV 159
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1830437548 185 IRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAF 227
Cdd:CHL00187 160 LQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTF 202
|
|
| modB |
PRK09421 |
molybdate ABC transporter permease subunit; |
102-257 |
4.53e-03 |
|
molybdate ABC transporter permease subunit;
Pssm-ID: 181841 Cd Length: 229 Bit Score: 37.59 E-value: 4.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 102 VATLVMTTLvALAGGYALARFDFRIKRGF----MLALLCSQFVPGALLLV----------PLFQIFaELQMINSLGSVII 167
Cdd:PRK09421 20 VAVLFSLPF-GILVAWLLARCRFPGKSLLdsllHLPLVLPPVVTGYLLLIsmgrrgfigqWLYEWF-GISFAFSWRGAAL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830437548 168 AETVFQLPLSMILISGFIRNVPYSLEEAAWVDGCDRFTAFRIVVLPLLRPGLIAVGSFAFVHAWNHFLFALMFLSD--QS 245
Cdd:PRK09421 98 AAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFGATITFVSNipGE 177
|
170
....*....|..
gi 1830437548 246 KQTIPVGLNTLM 257
Cdd:PRK09421 178 TQTIPSAMYTLI 189
|
|
|