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Conserved domains on  [gi|1829773283|ref|YP_009751658|]
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NADH dehydrogenase subunit C (chloroplast) [Hodgsonia heteroclita]

Protein Classification

NAD(P)H-quinone oxidoreductase subunit 3( domain architecture ID 10000018)

NAD(P)H-quinone oxidoreductase subunit 3 (NDH-C) is part of the NDH-1 complex that catalyzes the transfer of electrons from NAD(P)H to quinone in a respiratory and/or photosynthetic chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ndhC CHL00022
NADH dehydrogenase subunit 3
 1-120 2.13e-75

NADH dehydrogenase subunit 3


:

Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 218.70  E-value: 2.13e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283   1 MFLLYEYDIFWVFLIISSVIPILAFLISGILAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLY 80
Cdd:CHL00022    1 MFLLYEYDIFWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1829773283  81 PWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
Cdd:CHL00022   81 PWAMSFDVLGVSAFIEALIFVLILIVGLVYAWRKGALEWS 120
 
Name Accession Description Interval E-value
ndhC CHL00022
NADH dehydrogenase subunit 3
 1-120 2.13e-75

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 218.70  E-value: 2.13e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283   1 MFLLYEYDIFWVFLIISSVIPILAFLISGILAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLY 80
Cdd:CHL00022    1 MFLLYEYDIFWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1829773283  81 PWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
Cdd:CHL00022   81 PWAMSFDVLGVSAFIEALIFVLILIVGLVYAWRKGALEWS 120
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 3-119 1.08e-39

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 128.32  E-value: 1.08e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283   3 LLYEYDIFWVFLIISSVIPILAFLISGILAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPW 82
Cdd:COG0838     1 MLSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1829773283  83 AMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEW 119
Cdd:COG0838    81 AVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
25-118 3.38e-39

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 126.38  E-value: 3.38e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283  25 FLISGILAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLIL 104
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 1829773283 105 IVGLVYAWRKGALE 118
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
 
Name Accession Description Interval E-value
ndhC CHL00022
NADH dehydrogenase subunit 3
 1-120 2.13e-75

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 218.70  E-value: 2.13e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283   1 MFLLYEYDIFWVFLIISSVIPILAFLISGILAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLY 80
Cdd:CHL00022    1 MFLLYEYDIFWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1829773283  81 PWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
Cdd:CHL00022   81 PWAMSFDVLGVSAFIEALIFVLILIVGLVYAWRKGALEWS 120
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 1-120 2.71e-46

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 145.39  E-value: 2.71e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283   1 MFLLYEYDIFWVFLIISSVIPILAFLISGILAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLY 80
Cdd:PRK06602    2 TEVLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLF 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1829773283  81 PWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
Cdd:PRK06602   82 PWAVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 3-119 1.08e-39

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 128.32  E-value: 1.08e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283   3 LLYEYDIFWVFLIISSVIPILAFLISGILAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPW 82
Cdd:COG0838     1 MLSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1829773283  83 AMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEW 119
Cdd:COG0838    81 AVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
25-118 3.38e-39

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 126.38  E-value: 3.38e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283  25 FLISGILAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLIL 104
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 1829773283 105 IVGLVYAWRKGALE 118
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
7-119 1.75e-35

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 117.92  E-value: 1.75e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283   7 YDIFWVFLIISSVIPILAFLISGILAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSF 86
Cdd:PRK07756    9 YMIVLIFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAY 88

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1829773283  87 DVLGVSVFIEALIFVLILIVGLVYAWRKGALEW 119
Cdd:PRK07756   89 DKLGLFALIEMLIFVVMLLVGLAYAWKKKVLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
10-119 1.21e-23

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 88.18  E-value: 1.21e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283  10 FWVFLIISsvipILAFLISGILAPLSKEPEKLSSYESGIEPMGDAwVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVL 89
Cdd:PRK08489   21 FVAFFLTT----RLARFISRKLAQKNTEKLKLAIYECGPEPVKQP-NRISSHFYIMALLFILFDVEIVFMFPWAVDFKLL 95

                          90       100       110
                  ....*....|....*....|....*....|
gi 1829773283  90 GVSVFIEALIFVLILIVGLVYAWRKGALEW 119
Cdd:PRK08489   96 GLFGLIEMLLFIVLLTIGFIYAWKKGALEW 125
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 12-119 1.83e-22

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 84.72  E-value: 1.83e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283  12 VFLIISSVIPILAFLISGILAPLSKEPEKLSSYESGIEPMGDAWV--QFRIRYYMFALVFVVFDVETVFLYPWAMSFDVL 89
Cdd:PRK07928    9 VLGALAAAFAVVSVVVASLVGPKRYNRAKLEAYECGIEPTPQPAGggRFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDAL 88

                          90       100       110
                  ....*....|....*....|....*....|
gi 1829773283  90 GVSVFIEALIFVLILIVGLVYAWRKGALEW 119
Cdd:PRK07928   89 GVFGLVEMALFMLTVFVAYAYVWRRGGLEW 118
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 9-120 1.77e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 69.50  E-value: 1.77e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283   9 IFWVFLIISSVIPILAFLISGILAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSF-D 87
Cdd:MTH00148    4 ILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLgS 83

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1829773283  88 VLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
Cdd:MTH00148   84 SFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 14-119 4.09e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 68.37  E-value: 4.09e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283  14 LIISSVIPILAFLISGILAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYP--WAMSFDVLgV 91
Cdd:MTH00113    7 LTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPlpWAINLTTP-T 85

                          90       100
                  ....*....|....*....|....*...
gi 1829773283  92 SVFIEALIFVLILIVGLVYAWRKGALEW 119
Cdd:MTH00113   86 TTLTWATIILTLLTLGLIYEWLQGGLEW 113
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 12-119 4.69e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 68.10  E-value: 4.69e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283  12 VFLIISSVIPILAFLISGILAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLY--PWAMSFDVL 89
Cdd:MTH00069    4 LMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLptPWASQLNTP 83

                          90       100       110
                  ....*....|....*....|....*....|
gi 1829773283  90 GVSVFIEALIFVLiLIVGLVYAWRKGALEW 119
Cdd:MTH00069   84 TNTLFWSTLILIL-LTLGLIYEWIQGGLEW 112
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 14-120 3.16e-15

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 66.42  E-value: 3.16e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283  14 LIISSVIPILAFLISGILAPLSKEP-EKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPW-AMSFDVLGV 91
Cdd:MTH00012    8 MMISLILPPLVLGAAWVLAARSTADrEKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVpTILMTSTSK 87

                          90       100
                  ....*....|....*....|....*....
gi 1829773283  92 SVFIEALIFVLILIVGLVYAWRKGALEWS 120
Cdd:MTH00012   88 TVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 10-119 4.13e-15

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 65.85  E-value: 4.13e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283  10 FWVFLIISSVIPILAFLISGILAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVL 89
Cdd:MTH00018    3 LFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQI 82

                          90       100       110
                  ....*....|....*....|....*....|
gi 1829773283  90 GVSVFIEALIFVLILIVGLVYAWRKGALEW 119
Cdd:MTH00018   83 APFGFWTMVGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 9-119 4.14e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 65.57  E-value: 4.14e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283   9 IFWVFLIISSVIPILAFLISGILaplSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDV 88
Cdd:MTH00161    5 ILLIILLISIILMILASLLSKKS---IMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKT 81

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1829773283  89 LGVSVF-IEALIFVLILIVGLVYAWRKGALEW 119
Cdd:MTH00161   82 SNMMSWlITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 6-119 1.02e-14

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 65.12  E-value: 1.02e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283   6 EYDIFWVFLIISSVIPILAFLISGILAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMS 85
Cdd:MTH00055    4 EFLGIFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVV 83

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1829773283  86 FDVLGVSVFIEALIFVLILIVGLVYAWRKGALEW 119
Cdd:MTH00055   84 YNQIGLFGFWVMYLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 10-119 4.97e-14

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 63.08  E-value: 4.97e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283  10 FWVFLIISSVIPILAFLISGILAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPW-AMSFDV 88
Cdd:MTH00042    4 LIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLpPATLIT 83

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1829773283  89 LGVSVFIEALIFVLILIVGLVYAWRKGALEW 119
Cdd:MTH00042   84 NPSTLLPISLIFLIILTIGLVYEWVNGGLEW 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 14-120 1.36e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 61.88  E-value: 1.36e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283  14 LIISSVIPILAFLISGILAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLY--PWAMSFDVLGV 91
Cdd:MTH00106    7 LLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLplPWASQTNNLNT 86

                          90       100
                  ....*....|....*....|....*....
gi 1829773283  92 SVFIeALIFVLILIVGLVYAWRKGALEWS 120
Cdd:MTH00106   87 MLTM-ALLLISLLALSLAYEWTQKGLEWT 114
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 14-119 5.29e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 60.32  E-value: 5.29e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283  14 LIISSVIPILAFLISGILAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGV 91
Cdd:MTH00136    8 LTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLlpLPWGDQLPSPLL 87

                          90       100
                  ....*....|....*....|....*...
gi 1829773283  92 SVFIEALIFVLiLIVGLVYAWRKGALEW 119
Cdd:MTH00136   88 TFFWATAVLIL-LTLGLIYEWLQGGLEW 114
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 37-119 7.70e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 60.33  E-value: 7.70e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283  37 EPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGA 116
Cdd:MTH00030   40 DSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFWIVYTFLIVLAIGLAYEWIKGG 119


                  ...
gi 1829773283 117 LEW 119
Cdd:MTH00030  120 LEW 122
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 14-119 8.09e-11

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 55.00  E-value: 8.09e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283  14 LIISSVIPILAFLISGILAPLS-KEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMS-FDVLGV 91
Cdd:MTH00202    8 SILSILISSLLFLVSWMLSFRSlMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVlKSSWSK 87

                          90       100
                  ....*....|....*....|....*...
gi 1829773283  92 SVFIEALIFVLILIVGLVYAWRKGALEW 119
Cdd:MTH00202   88 GGLLGGTIFLLILIGGLIHEWKEGSLDW 115
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 9-119 3.32e-10

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 52.98  E-value: 3.32e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283   9 IFWVFLIISSVIPILAFLISGiLAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDV 88
Cdd:MTH00203    4 IMLFFLIALLLSLILLFIAFW-LPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQL 82

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1829773283  89 LGVSVFIeALIFVLILIVGLVYAWRKGALEW 119
Cdd:MTH00203   83 SSLSLLL-AFLFLILLTLGLIYEWLQGGLEW 112
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 60-119 7.44e-10

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 52.89  E-value: 7.44e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283  60 IRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEW 119
Cdd:PRK06432   83 NQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFIETLIFLAMPLFAVYYAFKMGYMRW 142
PRK06073 PRK06073
NADH dehydrogenase subunit A; Validated
 14-113 1.30e-04

NADH dehydrogenase subunit A; Validated


Pssm-ID: 235690  Cd Length: 124  Bit Score: 38.44  E-value: 1.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829773283  14 LIISSVIPILAFLISGILAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSV 93
Cdd:PRK06073   14 IVLGLAAGVGTYKLLKLILPSKPTPLKVSRYEAGNPPTGPAKLWLPMQYYGYLLLFLTLEPIVVLLLLIAFAPYYTFRDL 93

                          90       100
                  ....*....|....*....|
gi 1829773283  94 FIEALIFVLILIVGLVYAWR 113
Cdd:PRK06073   94 LLLIVVALVLMYPVLYYAYK 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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