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Conserved domains on  [gi|1829764509|ref|YP_009743047|]
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NADH dehydrogenase subunit 5 (mitochondrion) [Eurytemora affinis]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
5-541 9.10e-166

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 483.10  E-value: 9.10e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509   5 LFFTVSQALLLLAILSGGVGFIF-MSGGELALEWEAFSAFGQKMTLLLLFDFISLIFLSTVCLISGCVFFYSVSYMGGDM 83
Cdd:MTH00165    3 MCLISFFFLFFLSLILFFLGLYFlLNDYSLFIEWELFSLNSSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDK 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  84 FNPRFAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSEKSFNASMLTALTNRIGDVAILLCISLWVSCG 163
Cdd:MTH00165   83 NINRFIYLVLLFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYYQNKKSYNAGMLTALSNRIGDVAILLSIAWMMNFG 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 164 IFNYGLVSSASVNVLSSALT--LVIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILLSGW 241
Cdd:MTH00165  163 SWNFIFYLDFMKNSFEMLLIglLIMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLLFSSFF 242
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 242 SSWLLALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPFMAFFHLISHAYFKAMLFMAAGSIIHTVKDY 321
Cdd:MTH00165  243 SKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNS 322
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 322 QDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGPSLVVFVVSMIATGLTVVYSCRLTLGIFNL 401
Cdd:MTH00165  323 QDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSG 402
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 402 FSGRESYSAEGDSDFFMLGGMSILMGPAIMGGWWLSGLM-PSSLIIFMPLWQKLTVLILVLVSGALALSGVGVSERPNNI 480
Cdd:MTH00165  403 DFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIfPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLK 482
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1829764509 481 P------SKFFHQMWFMPITFSIGLTNGGLSYGKSNSLNVDETWLTFSTWQGIFKPNYKIYYLLASF 541
Cdd:MTH00165  483 SlknyklSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWL 549
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
5-541 9.10e-166

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 483.10  E-value: 9.10e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509   5 LFFTVSQALLLLAILSGGVGFIF-MSGGELALEWEAFSAFGQKMTLLLLFDFISLIFLSTVCLISGCVFFYSVSYMGGDM 83
Cdd:MTH00165    3 MCLISFFFLFFLSLILFFLGLYFlLNDYSLFIEWELFSLNSSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDK 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  84 FNPRFAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSEKSFNASMLTALTNRIGDVAILLCISLWVSCG 163
Cdd:MTH00165   83 NINRFIYLVLLFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYYQNKKSYNAGMLTALSNRIGDVAILLSIAWMMNFG 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 164 IFNYGLVSSASVNVLSSALT--LVIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILLSGW 241
Cdd:MTH00165  163 SWNFIFYLDFMKNSFEMLLIglLIMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLLFSSFF 242
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 242 SSWLLALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPFMAFFHLISHAYFKAMLFMAAGSIIHTVKDY 321
Cdd:MTH00165  243 SKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNS 322
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 322 QDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGPSLVVFVVSMIATGLTVVYSCRLTLGIFNL 401
Cdd:MTH00165  323 QDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSG 402
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 402 FSGRESYSAEGDSDFFMLGGMSILMGPAIMGGWWLSGLM-PSSLIIFMPLWQKLTVLILVLVSGALALSGVGVSERPNNI 480
Cdd:MTH00165  403 DFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIfPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLK 482
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1829764509 481 P------SKFFHQMWFMPITFSIGLTNGGLSYGKSNSLNVDETWLTFSTWQGIFKPNYKIYYLLASF 541
Cdd:MTH00165  483 SlknyklSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWL 549
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
12-473 1.14e-101

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 319.41  E-value: 1.14e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  12 ALLLLAILSGGVGFIFMSGGELALEWEAFSAFGQKMTLLLLFDFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRFAAL 91
Cdd:COG1009    37 APLAAFVLSLLLFPAVLGGEVVVELYTWIPVGSLGLDFGFRLDGLSLLMLLLVTGVGLLVHIYSIGYMSGDPGLARFFAY 116
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  92 VFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSEKSFNASMLTA-LTNRIGDVAILLCIS-LWVSCGIFNYGL 169
Cdd:COG1009   117 LLLFMAAMLGLVLSDNLLLLFVFWELVGLCSYLLIGFWYEKPSARRAARKAfLVTRVGDLGLLLGILlLGAIAGTLNFSE 196
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 170 VSSASVNVLSSALT-----LVIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILLSGWSSW 244
Cdd:COG1009   197 LLAAAPTILSSPLLtlillLLLLGAFGKSAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARLSPLFALSPVWLT 276
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 245 LLA-LGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPFMAFFHLISHAYFKAMLFMAAGSIIHTVKDyQD 323
Cdd:COG1009   277 VVAiIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHATGT-RD 355
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 324 LRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQG-PSLVVFVVSMIATGLTVVYSCRLTLGIFNLF 402
Cdd:COG1009   356 IRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAGgLGPLLLAVALLGAFLTAFYSFRLFFLVFFGK 435
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1829764509 403 SGRESYSAEGDSDFFMLGGMSILMGPAIMGGWWLSGLMPSSLI---IFMPLWQKLTVLILVLVSGALALSGVGV 473
Cdd:COG1009   436 PRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLLEGLLApaaVLGGELHLAHGLLLNALPLLLSLLGIAL 509
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
37-467 4.41e-90

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 289.18  E-value: 4.41e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  37 WEAFSAFGQKMTLLLLFDFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRFAALVFMFILSMALMILSPNLISLLLGWD 116
Cdd:TIGR01974  65 FPWISVGGFQVDFGLRLDGLSLTMLVVVTGVGSLVHIYSIGYMAHDEGYSRFFAYLNLFTFSMLMLVLADNFLQLFFGWE 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 117 GLGVTSYLLVCYYMSEKSFNASMLTA-LTNRIGDVAILLCI-SLWVSCGIFNYGLVSSASVNVLSSALT----LVIIAAM 190
Cdd:TIGR01974 145 GVGLCSYLLIGFWYKKPSANNAAIKAfVVNRVGDFGLLLGIfLIFWYFGTLNFQEVFALAPGAFFSALTliclLLFIGAM 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 191 TKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILLS-GWSSWLLALGLFTMTMAGAAAIFELDMKKV 269
Cdd:TIGR01974 225 GKSAQLPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARTSPLFELSpTALYLVTIIGAITALFAATVALVQNDIKRI 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 270 IALSTLSQLGVMFFSLGMGQPFMAFFHLISHAYFKAMLFMAAGSIIHTVKDYQDLRKMGGSLINLPALATVCLVSNLSLC 349
Cdd:TIGR01974 305 LAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALI 384
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 350 GMPFLSGFYSKDLILESLFVQGPSLVVFVVSMIATGLTVVYSCRLTLGIFNLFSGRESYSAEGDSDFFMLGGMSILMGPA 429
Cdd:TIGR01974 385 GFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGS 464
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|
gi 1829764509 430 IMGGWWLSGLM------------PSSLIIFMPLWQKLTVLILVLVSGALA 467
Cdd:TIGR01974 465 VFAGFFIVPLFeflkgvlptsaePALEHHHVPALEIWSPTAVAILGILLA 514
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
105-380 3.86e-41

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 150.16  E-value: 3.86e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 105 SPNLISLLLGWDGLGVTSYLLVCYYM-SEKSFNASMLTALTNRIGDVAILLCISL------WVSCGIFNYGLVSSASVNV 177
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGkSPRSSEAGMKYFLLTLLGSSILLFGISLmynytgTLSFDELSKALTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 178 LSSALTLVIIAAMTKSAQIPFSAWLPAA-MAAPTPVSALVhSSTLVTAGVYFLVRMNYLILLSG--WSSWLLALGLFTMT 254
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAyEGAPTPVSALL-AATLVKAGGYGLIRRSLLYLPSSpfIQQILLILAIISML 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 255 MAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPF---MAFFHLISHAYFKAMLFMAAGSIIHTVKDYQDLRKMGGSL 331
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLA 239
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1829764509 332 INLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGPSLVVFVVS 380
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGV 288
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
5-541 9.10e-166

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 483.10  E-value: 9.10e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509   5 LFFTVSQALLLLAILSGGVGFIF-MSGGELALEWEAFSAFGQKMTLLLLFDFISLIFLSTVCLISGCVFFYSVSYMGGDM 83
Cdd:MTH00165    3 MCLISFFFLFFLSLILFFLGLYFlLNDYSLFIEWELFSLNSSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDK 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  84 FNPRFAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSEKSFNASMLTALTNRIGDVAILLCISLWVSCG 163
Cdd:MTH00165   83 NINRFIYLVLLFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYYQNKKSYNAGMLTALSNRIGDVAILLSIAWMMNFG 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 164 IFNYGLVSSASVNVLSSALT--LVIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILLSGW 241
Cdd:MTH00165  163 SWNFIFYLDFMKNSFEMLLIglLIMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLLFSSFF 242
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 242 SSWLLALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPFMAFFHLISHAYFKAMLFMAAGSIIHTVKDY 321
Cdd:MTH00165  243 SKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNS 322
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 322 QDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGPSLVVFVVSMIATGLTVVYSCRLTLGIFNL 401
Cdd:MTH00165  323 QDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSG 402
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 402 FSGRESYSAEGDSDFFMLGGMSILMGPAIMGGWWLSGLM-PSSLIIFMPLWQKLTVLILVLVSGALALSGVGVSERPNNI 480
Cdd:MTH00165  403 DFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIfPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLK 482
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1829764509 481 P------SKFFHQMWFMPITFSIGLTNGGLSYGKSNSLNVDETWLTFSTWQGIFKPNYKIYYLLASF 541
Cdd:MTH00165  483 SlknyklSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWL 549
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
2-529 3.52e-153

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 450.45  E-value: 3.52e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509   2 NSLLFFTVSqallllAILSGGVGFIFMSGGELALEWEAFSAFGQKMTLLLLFDFISLIFLSTVCLISGCVFFYSVSYMGG 81
Cdd:MTH00151    7 SSFLLFSYS------VFLFPLLGYFGLNGISLIFEWELLSVSSCSFSFELVLDWVSLSFSGVVCLISGCVFLFSSSYMSE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  82 DMFNPRFAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSEKSFNASMLTALTNRIGDVAILLCISLWVS 161
Cdd:MTH00151   81 DPFLKRFMWLVMLFVLSMNLLIFIPSLPSLLLGWDGLGIVSFALVIYYQNKKSLSAGMLTALTNRIGDVLILLSIALLVL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 162 CGIFNYGLVSSASVNVLSSalTLVIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRM-NYLILLSG 240
Cdd:MTH00151  161 LGHWSILSMWDFKLSGWLG--LLLVLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFfPFLSSSSG 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 241 WSSWLLALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPFMAFFHLISHAYFKAMLFMAAGSIIHTVKD 320
Cdd:MTH00151  239 FSSFLLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFLCAGSIIHSSSG 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 321 YQDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGPSLVVFVVSMIATGLTVVYSCRLTLGIFN 400
Cdd:MTH00151  319 TQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALYSARLSFCLVW 398
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 401 LFSGRESYSAEGDSDFFMLGGMSILMGPAIMGGWWLSGLMPS-SLIIFMPLWQKLTVLILVLVS--GALALSGVGVSERP 477
Cdd:MTH00151  399 GSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGfSEEFFLPSYLKLLIGFVILLGlfLSFGFWDSGFSSSK 478
                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1829764509 478 NNIPSKFFHQMWFMPITFSIGLTNGGLSYGKSNSLNVDETWLTFSTWQGIFK 529
Cdd:MTH00151  479 MVKLSFFFSSMWFLSPLSSQPLKSLSLKLSNSSMKSLDMGWLEILGGQGVFK 530
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
13-559 9.09e-130

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 390.55  E-value: 9.09e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  13 LLLLAILSGGVGFIFMSGGELA-LEWEAFSAFGQKMTLLLLFDFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRFAAL 91
Cdd:MTH00209    9 LMLLFLFSFLMFVIFMWFQKIViLEWELLSLNSMSISFPLIIDKMSLLFSSVVLLISGSVMWFSTSYMAGEKFKKRFILL 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  92 VFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSEKSFNASMLTALTNRIGDVAILLCISLWVSCGIFNYgLVS 171
Cdd:MTH00209   89 VLLFILSMNFLIFVPNLITLLLGWDGLGLVSYLLVIYYQNSKSLSAGMLTALTNRVGDALLILSIAWMLMHGNWNI-FYL 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 172 SASVNVLSSALTLVIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRM-NYLILLSGWSSWLLALGL 250
Cdd:MTH00209  168 NFNSNLGSVISVLIVLAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFfPSLFSSPFFSMSLLLLGS 247
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 251 FTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPFMAFFHLISHAYFKAMLFMAAGSIIHTVKDYQDLRKMGGS 330
Cdd:MTH00209  248 LTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFICAGNIIHSHGHSQDIRMVGNL 327
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 331 LINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGPSLVVFVVSMIATGLTVVYSCRLTLGIFNLFSGRESYSA 410
Cdd:MTH00209  328 WYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAAYSMRLSYFSLWGPNSSKSLNS 407
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 411 EGDSDFFMLGGMSILMGPAIMGGWWLSGLM-PSSLIIFMPLWQKLTVLILVLVSGALALSGVGVSERP-NNIPSKFFH-Q 487
Cdd:MTH00209  408 SFDQNKLNLKPMLVLTLGSITGGSVMSWVMvPSVNSVVLPWFLKLLPIMLILFGVLLMYMVLKKNFFLiKGYKVNYFLsQ 487
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1829764509 488 MWFMPITFSIGLTNGGLSYGKSNSLNVDETWLTFSTWQGIFKPNYKIYYLLASFRGGALVSLALIGGLSLIV 559
Cdd:MTH00209  488 MWFLPDLSSQPVNKFTMKLSKTMLKLLDQGWVEKMSGQGSFKVLKKSSKLSQIIQNNSLKLFVTFMMLILLG 559
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
33-559 1.48e-122

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 372.18  E-value: 1.48e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  33 LALEWEAFSAFGQKMTLLLLFDFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRFAALVFMFILSMALMILSPNLISLL 112
Cdd:MTH00207   35 ILIEWEIFTISSSPINFTIILDPTGTLFSSTVLFISANVLLFAKTYMQEDKFLSRFISLVLLFVLSMNMLIFFPHLMILL 114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 113 LGWDGLGVTSYLLVCYYMSEKSFNASMLTALTNRIGDVAILLCISLWVSCGIFNyglVSSASVNVLSSALTLVI-IAAMT 191
Cdd:MTH00207  115 LGWDGLGLVSFILVIYYQNPKSLGAGMITALTNRIGDVMLLLSIGWTLNQGHWS---ITNMWQTDMNNYIALSImIAAMT 191
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 192 KSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRM-NYLILLSGWSSWLLALGLFTMTMAGAAAIFELDMKKVI 270
Cdd:MTH00207  192 KSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFyPFLSSTYWFNPALLLTASLTMLMAGLSAMTECDMKKII 271
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 271 ALSTLSQLGVMFFSLGMGQPFMAFFHLISHAYFKAMLFMAAGSIIHTVKDYQDLRKMGGSLINLPALATVCLVSNLSLCG 350
Cdd:MTH00207  272 ALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFVCAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCG 351
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 351 MPFLSGFYSKDLILESLFVQGPSLVVFVVSMIATGLTVVYSCRLTLGIFNLFSGRESYSAEGDSDFFMLGGMSILMGPAI 430
Cdd:MTH00207  352 SPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAYSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAI 431
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 431 MGG----WWlsgLMPSSLIIFMPLWQKLTVLILVLVSGALALSGVGVSER------PNNIPSKFFHQMWFMPITFSIGLT 500
Cdd:MTH00207  432 TSGsalnWW---LPTPQEEPILPLQYKLLPLLVVTLGALLAWLFTTPNITktplliNNPLSHFASCLMWFLVPLSSQFIM 508
                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1829764509 501 NGGLSYGKSNSLNVDETWLTFSTWQGIFKPNYKIYYLLASFRGGALVSLALIGGLSLIV 559
Cdd:MTH00207  509 STPMNLSHNYLKLLDQGWLEMLGAQGTFKMFSRSSNNVMKLQKNIPNNYLMMSFVLLTI 567
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
1-559 2.31e-109

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 339.23  E-value: 2.31e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509   1 MNSLLFFTVSQALLLLAILSGGVGFIFMSGGELALEWEAFSAFGQKMTLLLLFDFISLIFLSTVCLISGCVFFYSVSYMG 80
Cdd:MTH00211   25 NNSKLHIKKAVKLSFFISLIPLLIFLDQGLETILTNWSWINLGLFSLNLSFKFDFYSIFFTSVALYVTWSILEFSLWYMS 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  81 GDMFNPRFAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSEKSFNASMLTALT-NRIGDVAILLCIsLW 159
Cdd:MTH00211  105 SEPNINRFFKYLLLFLIFMLILVSANNLFQLFIGWEGVGIMSFLLISWWYGRSDANTAALQAVIyNRIGDIGLLLSM-VW 183
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 160 VSCGIFNYGLVSSASVNVLSSALTL-VIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILL 238
Cdd:MTH00211  184 LLLNLNSWEISQLFILNLDLTLFLLgLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRLSPLFQN 263
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 239 SGWS-SWLLALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPFMAFFHLISHAYFKAMLFMAAGSIIHT 317
Cdd:MTH00211  264 NQLIlGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFMCSGSIIHG 343
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 318 VKDYQDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGPSLVVFVVSMIATGLTVVYSCRLTLG 397
Cdd:MTH00211  344 LNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAAYSFRLIFL 423
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 398 IFNLFSGRESYSAEGDSDFFMLGGMSILMGPAIMGGWWLSGLMPS--SLIIFMPLWQKLTVLILVLVSGALALSGVGVSE 475
Cdd:MTH00211  424 SLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPekPEILSLPFLLKLMPLLVTIVGLLLGLELVNLTH 503
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 476 RPNNIPSKFFH-QMWFMPITFSIGLTNGGLSYGKSNSLNV-DETWLTFSTWQGIFKPNYKIYYLLASFRGGALVSLALIG 553
Cdd:MTH00211  504 KQLKTSTLSFSnMLGYYPPIIHRLLPKLSLKWGQTLSTHLmDLGWYEKLGPKGLGVNQKKLIKLVTSPQQGLIKSYLALL 583

                  ....*.
gi 1829764509 554 GLSLIV 559
Cdd:MTH00211  584 LLSLLL 589
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
12-473 1.14e-101

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 319.41  E-value: 1.14e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  12 ALLLLAILSGGVGFIFMSGGELALEWEAFSAFGQKMTLLLLFDFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRFAAL 91
Cdd:COG1009    37 APLAAFVLSLLLFPAVLGGEVVVELYTWIPVGSLGLDFGFRLDGLSLLMLLLVTGVGLLVHIYSIGYMSGDPGLARFFAY 116
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  92 VFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSEKSFNASMLTA-LTNRIGDVAILLCIS-LWVSCGIFNYGL 169
Cdd:COG1009   117 LLLFMAAMLGLVLSDNLLLLFVFWELVGLCSYLLIGFWYEKPSARRAARKAfLVTRVGDLGLLLGILlLGAIAGTLNFSE 196
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 170 VSSASVNVLSSALT-----LVIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILLSGWSSW 244
Cdd:COG1009   197 LLAAAPTILSSPLLtlillLLLLGAFGKSAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARLSPLFALSPVWLT 276
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 245 LLA-LGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPFMAFFHLISHAYFKAMLFMAAGSIIHTVKDyQD 323
Cdd:COG1009   277 VVAiIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHATGT-RD 355
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 324 LRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQG-PSLVVFVVSMIATGLTVVYSCRLTLGIFNLF 402
Cdd:COG1009   356 IRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAGgLGPLLLAVALLGAFLTAFYSFRLFFLVFFGK 435
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1829764509 403 SGRESYSAEGDSDFFMLGGMSILMGPAIMGGWWLSGLMPSSLI---IFMPLWQKLTVLILVLVSGALALSGVGV 473
Cdd:COG1009   436 PRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLLEGLLApaaVLGGELHLAHGLLLNALPLLLSLLGIAL 509
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
37-467 4.41e-90

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 289.18  E-value: 4.41e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  37 WEAFSAFGQKMTLLLLFDFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRFAALVFMFILSMALMILSPNLISLLLGWD 116
Cdd:TIGR01974  65 FPWISVGGFQVDFGLRLDGLSLTMLVVVTGVGSLVHIYSIGYMAHDEGYSRFFAYLNLFTFSMLMLVLADNFLQLFFGWE 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 117 GLGVTSYLLVCYYMSEKSFNASMLTA-LTNRIGDVAILLCI-SLWVSCGIFNYGLVSSASVNVLSSALT----LVIIAAM 190
Cdd:TIGR01974 145 GVGLCSYLLIGFWYKKPSANNAAIKAfVVNRVGDFGLLLGIfLIFWYFGTLNFQEVFALAPGAFFSALTliclLLFIGAM 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 191 TKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILLS-GWSSWLLALGLFTMTMAGAAAIFELDMKKV 269
Cdd:TIGR01974 225 GKSAQLPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARTSPLFELSpTALYLVTIIGAITALFAATVALVQNDIKRI 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 270 IALSTLSQLGVMFFSLGMGQPFMAFFHLISHAYFKAMLFMAAGSIIHTVKDYQDLRKMGGSLINLPALATVCLVSNLSLC 349
Cdd:TIGR01974 305 LAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALI 384
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 350 GMPFLSGFYSKDLILESLFVQGPSLVVFVVSMIATGLTVVYSCRLTLGIFNLFSGRESYSAEGDSDFFMLGGMSILMGPA 429
Cdd:TIGR01974 385 GFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGS 464
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|
gi 1829764509 430 IMGGWWLSGLM------------PSSLIIFMPLWQKLTVLILVLVSGALA 467
Cdd:TIGR01974 465 VFAGFFIVPLFeflkgvlptsaePALEHHHVPALEIWSPTAVAILGILLA 514
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
13-541 5.70e-88

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 284.17  E-value: 5.70e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  13 LLLLAILSGGVGFIFMSGGELAL-----EWeaFSAFGQKMTLLLLFDFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPR 87
Cdd:MTH00208   62 LKTLAFLSLINLLIWILLGCPNInislsNW--LSNTLFNFSLSFIFDFYFILFFSVALFVTWSIIEFSHYYMSNDPNKNA 139
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  88 FAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSEKSFNASMLTA-LTNRIGDVAILLCISLWV----SC 162
Cdd:MTH00208  140 FFRLLIIFLLNMLILTSSNNLFLLFIGWEGVGFLSFLLISWWTTRNDANSSALQAvIYNRIGDIGIILFLSLSLinfnSW 219
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 163 GIFNYGLVSSASVNVLSSALTLVIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILLSGW- 241
Cdd:MTH00208  220 NLNEILSLNNSNSFLINILLFGILLAAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGVFLLIRTSPLISNSPWf 299
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 242 SSWLLALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPFMAFFHLISHAYFKAMLFMAAGSIIHTVKDY 321
Cdd:MTH00208  300 LSLCLILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFLCSGSIIHSLNNE 379
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 322 QDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGPSLVVFVVSMIATGLTVVYSCRLTLGIFNL 401
Cdd:MTH00208  380 QDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAVYSFRIIFFCFLN 459
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 402 FSGRESYSAEGDSDFFMLGGMSILMGPAIMGGWWLSGLMPSSLIIFMPLWQKLTVLILVLVsGALALSGVGVSERPNNIP 481
Cdd:MTH00208  460 NPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLPPLTLPLILKSLPLIVTII-GAAFSFSFLLSLSSNPIN 538
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1829764509 482 SKFFH----QMWFMPITFSIGLTNGGLSYGKSNSLNVDETWLTFSTWQGIFKPNYKI-------------YYLLASF 541
Cdd:MTH00208  539 SNFFSflsnQWFFVNISHSIIISFSFFTSLFGSTRTLDRGWSENIGPQGIGNTSSTLsksyqltqtgyikQYLLSST 615
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
12-467 8.50e-87

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 280.89  E-value: 8.50e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  12 ALLLLAILSGGVGFIFMSGGELALE---WEAFSAFGQKMTLLLLFDFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRF 88
Cdd:PRK06590   38 LVGLSALLSLVVFFDFLLGGGRAFSqtlWTWISVGDFDVDFGLRVDGLSATMLVVVTGVSFLVHIYSIGYMAHDEGYRRF 117
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  89 AALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSEKSFNASMLTA-LTNRIGDVAILLCI-SLWVSCGIFN 166
Cdd:PRK06590  118 FAYLNLFTFSMLMLVLSDNLLQLFFGWEGVGLCSYLLIGFWYKKPSAGAAAMKAfIVNRVGDVGLALGIfLLFAEFGSLN 197
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 167 YGLVSSASVNVL---SSALTLV----IIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILLS 239
Cdd:PRK06590  198 YDEVFAAAPQFFglgWSALTLIclllFIGAMGKSAQFPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARMSPLFELS 277
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 240 -GWSSWLLALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPFMAFFHLISHAYFKAMLFMAAGSIIHTV 318
Cdd:PRK06590  278 pEALLFVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAM 357
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 319 KDYQDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGpSLVVFVVSMIATGLTVVYSCRLtlgI 398
Cdd:PRK06590  358 HHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILEAAFANG-HINLFVAGLVGAFLTAFYSFRL---I 433
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 399 FNLFSG--RESYSAEGDSDFFMLGGMSILMGPAIMGGWWLSGLMPSSLIIFM-----------PLWQKLTVLILVLVSGA 465
Cdd:PRK06590  434 FLVFHGkeKEKIHHPHESPAVMTLPLIVLAVLSVFAGALIVPPFLGVLPLTTelahgeaehhlPVWVALLPLVVALAGIA 513

                  ..
gi 1829764509 466 LA 467
Cdd:PRK06590  514 LA 515
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
35-396 7.02e-79

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 259.71  E-value: 7.02e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  35 LEWEAFSAFgqKMTLLLLFDFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRFAALVFMFILSMALMILSPNLISLLLG 114
Cdd:MTH00004   66 WPWIFTTTF--NIPISFKLDQYSLMFLPIALFVTWSILEFSTWYMASDPHITKFFKYLLIFLIAMLILITANNMFQLFIG 143
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 115 WDGLGVTSYLLVCYYMSEKSFNASMLTALT-NRIGDVAILLCISlWVSCGIFNYGLVSSASVNVLSSALTL-VIIAAMTK 192
Cdd:MTH00004  144 WEGVGIMSFLLIGWWSGRAEANTAALQAIIyNRIGDIGLILSMA-WLAMTLNTWEIQQLFSPTQTPTLPLLgLILAATGK 222
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 193 SAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILLSGWSSWL-LALGLFTMTMAGAAAIFELDMKKVIA 271
Cdd:MTH00004  223 SAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRTHPLLQNNQTALTIcLCLGALTTLFAATCALTQNDIKKIIA 302
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 272 LSTLSQLGVMFFSLGMGQPFMAFFHLISHAYFKAMLFMAAGSIIHTVKDYQDLRKMGGSLINLPALATVCLVSNLSLCGM 351
Cdd:MTH00004  303 FSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGT 382
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1829764509 352 PFLSGFYSKDLILESLFVQGPSLVVFVVSMIATGLTVVYSCRLTL 396
Cdd:MTH00004  383 PFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYSLRMIL 427
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
25-528 2.21e-74

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 247.51  E-value: 2.21e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  25 FIFMSGG--ELALEWEAFSAFGQKMTLLLLFDFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRFAALVFMFILSMALM 102
Cdd:MTH00066   50 MIFINQGleSITTSFHWMNIFNFNINSSFKFDQYSIIFLPIALFVTWSILEFAIWYMHSDPKINRFFKYLLIFLIAMMIL 129
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 103 ILSPNLISLLLGWDGLGVTSYLLVCYYMSEKSFNASMLTA-LTNRIGDVAILLCISlWVScgiFNYGLVSSASVNVLSSA 181
Cdd:MTH00066  130 VTANNLFQLFIGWEGVGIMSFLLIGWWHARADANTAALQAvLYNRVGDIGLILSMA-WLA---MNTNSWELQQIFLLNDN 205
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 182 LTL----VIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRM------NYLILlsgwsSWLLALGLF 251
Cdd:MTH00066  206 STLpllgLILAAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRFhpllenNQTAL-----TICLCLGAL 280
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 252 TMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPFMAFFHLISHAYFKAMLFMAAGSIIHTVKDYQDLRKMGGSL 331
Cdd:MTH00066  281 TTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLQ 360
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 332 INLPaLATVCL-VSNLSLCGMPFLSGFYSKDLILESLFVQGPSLVVFVVSMIATGLTVVYSCRLTLGIFNLFSGRESYSA 410
Cdd:MTH00066  361 KALP-ITTSCLtIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRSLPLSP 439
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 411 EGDSDFFMLGGM------SILMGPAIMggwwlSGLMPSSLIIF-MPLWQKLTVLILVLVSGALALSGVGVSERPNNIP-- 481
Cdd:MTH00066  440 INENNPLIINPIkrlawgSIIAGLLII-----FNILPMKPQILtMPTFMKLAALLVTLLGLLIALDLAKITSKTTPKTkm 514
                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*...
gi 1829764509 482 SKFFHQMWFMPITFSIGLTNGGLSYGKSNSLN-VDETWLTFSTWQGIF 528
Cdd:MTH00066  515 HSFSNLLAFFPTIIHRLSPKTNLNSGQNIATHlTDMTWYEKSGPKGLT 562
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
51-468 4.19e-72

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 241.90  E-value: 4.19e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  51 LLFDFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRFAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYM 130
Cdd:MTH00020   76 LQFDGLVAIMLLVVTTVSTLVHIFSTAYMRGDPHIPRFMSYLSLFTFLMVVLVTSDNYLQLFIGWEGVGLCSYLLINFWL 155
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 131 SEKSFNASMLTA-LTNRIGDVAILLCI-SLWVSCGIFNYGLVSSASVNVLSSALTL----VIIAAMTKSAQIPFSAWLPA 204
Cdd:MTH00020  156 TRIEANKAAIKAmLVNRVGDIGLLLAMfLLWDRFGSLDFSSVFNMVVSAPSSDITLiclfLFIGAVGKSAQLGLHTWLPD 235
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 205 AMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILLSGWSSWLLAL-GLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFF 283
Cdd:MTH00020  236 AMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVTIvGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVV 315
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 284 SLGMGQPFMAFFHLISHAYFKAMLFMAAGSIIHTVKDYQDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLI 363
Cdd:MTH00020  316 ACGLSHYSISLFHLMNHAFFKALLFLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLI 395
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 364 LESLFVQGPSLVVFVVSMIATGLTVVYSCRLTLGIF--NLFSGRESYSAEGDSDFFMLGGMSILMGPAIMGGWWLSGLMP 441
Cdd:MTH00020  396 LELAFGQYYLIFAYWLGCFSALLTAFYSIRLIYLTFlsNTNLKKAVFFHLHEGDWNLLLPLGILALGSIFVGYLAKEMIW 475
                         410       420       430
                  ....*....|....*....|....*....|
gi 1829764509 442 SSLIIF---MPLWQKLTVLILVLVSGALAL 468
Cdd:MTH00020  476 SFQITLppiVPLSIKLLPVFLSLGGIGLVI 505
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
46-468 1.91e-71

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 239.75  E-value: 1.91e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  46 KMTLLLLFDFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRFAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLL 125
Cdd:MTH00108   75 KLSLSFKLDYFSMIFIPVALFVTWSIMEFSMWYMHSDPNINRFFKYLLLFLITMLILVTANNLFQLFIGWEGVGIMSFLL 154
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 126 VCYYMSEKSFNASMLTA-LTNRIGDVAILL-----CISL--WVSCGIFnyglvsSASVNVLSSALTLVIIAAMTKSAQIP 197
Cdd:MTH00108  155 IGWWYGRTDANTAALQAiLYNRIGDIGFILamawfLLNLnsWDLQQIF------MLNPNNSNLPLMGLLLAATGKSAQFG 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 198 FSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRM------NYLILlsgwsSWLLALGLFTMTMAGAAAIFELDMKKVIA 271
Cdd:MTH00108  229 LHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRFhplmenNKTIQ-----TLTLCLGAITTLFTAICALTQNDIKKIVA 303
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 272 LSTLSQLGVMFFSLGMGQPFMAFFHLISHAYFKAMLFMAAGSIIHTVKDYQDLRKMGGSLINLPALATVCLVSNLSLCGM 351
Cdd:MTH00108  304 FSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGM 383
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 352 PFLSGFYSKDLILESLFVQGPSLVVFVVSMIATGLTVVYSCRLtlgIFNLFSGRESYSAE---GDSDFFMLGGMSILMGP 428
Cdd:MTH00108  384 PFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYSTRI---IFFALLGQPRFPPLitiNENNPLLINPIKRLLLG 460
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|..
gi 1829764509 429 AIMGGWWLSGLMPSSLII--FMPLWQKLTVLILVLVSGALAL 468
Cdd:MTH00108  461 SIFAGFLISNNIPPTTIPqmTMPLYLKLTALAVTILGFILAL 502
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
1-403 2.34e-67

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 227.11  E-value: 2.34e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509   1 MNSLLFFTVSQALLLLAILsggVGFIFMSGGELALEWEAFSafgqkmtLLLLFDFISLIFLSTVCLISGCVFFYSVSYMG 80
Cdd:MTH00095    1 MNILIFLILFFFFFLLLFI---LFLPFMKLNLFFLEWDFLS-------LKFNFYFNSLLFSLILLLVTLSVLVFSSYYMN 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  81 GDMFNPRFAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSEKSFNASMLTALTNRIGDVAILLCISlwv 160
Cdd:MTH00095   71 GELNFNYFYFVLLIFVGSMFMLNFSNSVFTMLLSWDLLGISSFFLVLFYNNWDSNSGAMNTALTNRIGDFFIFLFFS--- 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 161 scGIFNYGLVSSASVNVLSSALTLVIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILLSG 240
Cdd:MTH00095  148 --GFIFSSYYFFSFSFFSSSMILMLLLTSFTKSAQFPFSSWLPKAMSAPTPVSSLVHSSTLVTAGLILLMNFSYLILNMN 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 241 WSSWLLALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPFMAFFHLISHAYFKAMLFMAAGSIIHTVKD 320
Cdd:MTH00095  226 VMKIMLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQVGYLIHSNFG 305
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 321 YQDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGPSLVVFVVSMIATGLTVVYSCRLTLGIFN 400
Cdd:MTH00095  306 QQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGYSYRLWKSFFL 385

                  ...
gi 1829764509 401 LFS 403
Cdd:MTH00095  386 SFS 388
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
51-493 1.02e-65

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 224.89  E-value: 1.02e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  51 LLFDFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRFAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYM 130
Cdd:MTH00210   76 LQFDSLTSTMLIVITSVSALVHIYSTGYMSGDPHIPRFMSYLSLFTFLMIVLVTSDNYVQLFIGWEGVGLCSYLLINFWL 155
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 131 SE-KSFNASMLTALTNRIGDVAILLC-ISLWVSCGIFNYGLVSSA-SVNVLSSALT----LVIIAAMTKSAQIPFSAWLP 203
Cdd:MTH00210  156 TRiKANKAAIKAMLINRVGDIGLVLAmIMILKEFGTLEFSTISSLlVTNINKESLTiiclLLFIGAVGKSAQLGLHTWLP 235
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 204 AAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILLSGWSSWLLA-LGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMF 282
Cdd:MTH00210  236 DAMEGPTPVSALIHAATMVTAGVFLIIRSGPLFEGSPLALTIVTiLGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMV 315
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 283 FSLGMGQPFMAFFHLISHAYFKAMLFMAAGSIIHTVKDYQDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDL 362
Cdd:MTH00210  316 MVCGISNYSTSLFHLMNHAFFKALLFLSAGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDL 395
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 363 ILESLFVQGPSLVVFVVSMIATGLTVVYSCRLTLGIF--NLFSGRESYSAEGDSDFFMLGGMSILMGPAIMGGWWLSGLM 440
Cdd:MTH00210  396 ILELTYDKYYIAFAYWLGSFSALLTAFYSIRLIYLTFitNTNSKKEVFIGVHESSWNITFPLLLLAFGSIFVGYLGKEVV 475
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1829764509 441 PSSLII-FMPLWQKLTVLILVLVSGALALSGVGVSERPNNIPSKFFHQMWFMPI 493
Cdd:MTH00210  476 LSNVIPpIVPNSIKMIPLLFSLLGALLAFVIYNSMVFLIKISRRGVSIRLYHVI 529
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
53-394 1.21e-62

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 216.62  E-value: 1.21e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  53 FDFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRFAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSE 132
Cdd:MTH00137   86 FDHYSIIFTPIALYVTWSILEFASWYMHADPNMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYGR 165
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 133 KSFNASMLTA-LTNRIGDVAILLCISlWVSCGIFNYGL--VSSASVNV-LSSALTLVIIAAMTKSAQIPFSAWLPAAMAA 208
Cdd:MTH00137  166 ADANTAALQAvIYNRVGDIGLILAMA-WMATNLNSWEIqqIFALSKDFdLTLPLLGLILAATGKSAQFGLHPWLPSAMEG 244
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 209 PTPVSALVHSSTLVTAGVYFLVRM------NYLILlsgwsSWLLALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMF 282
Cdd:MTH00137  245 PTPVSALLHSSTMVVAGIFLLIRLsplmenNQTAL-----TTCLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMM 319
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 283 FSLGMGQPFMAFFHLISHAYFKAMLFMAAGSIIHTVKDYQDLRKMGGsLINLPALATVCL-VSNLSLCGMPFLSGFYSKD 361
Cdd:MTH00137  320 VTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGG-LHHLTPFTSSCLtIGSLALTGTPFLAGFFSKD 398
                         330       340       350
                  ....*....|....*....|....*....|...
gi 1829764509 362 LILESLFVQGPSLVVFVVSMIATGLTVVYSCRL 394
Cdd:MTH00137  399 AIIEALNTSHLNAWALTLTLIATSFTAVYSLRV 431
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
35-394 3.83e-59

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 208.34  E-value: 3.83e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  35 LEWEAFSAFGQKMTLLLlfDFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRFAALVFMFILSMALMILSPNLISLLLG 114
Cdd:PRK07376   73 FEWASAGDFHLPMGYVI--DPLGAVMLVLVTTVALLVMIYSDGYMAHDPGYVRFFAYLSLFSSSMLGLVISPNLVQIYVF 150
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 115 WDGLGVTSYLLVCYYMSEKSF-NASMLTALTNRIGDVAILLCI-SLWVSCGIFNY-----GLVSSASVNVLSSALT---- 183
Cdd:PRK07376  151 WELVGMCSYLLVGFWYDRKGAaDAAQKAFVVNRVGDFGLLLGIlGLFWATGSFDFdgiadRLSELVSSGAVSGWLAlllc 230
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 184 -LVIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILLSGWSSWLLAL-GLFTMTMAGAAAI 261
Cdd:PRK07376  231 iLVFLGPMAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGVFLVARMYPVFEQFPAVMTVIAWtGAITAFLGASIAL 310
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 262 FELDMKKVIALSTLSQLGVMFFSLGMGQPFMAFFHLISHAYFKAMLFMAAGSIIHTVKDY--------QDLRKMGGSLIN 333
Cdd:PRK07376  311 TQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIHGMEEVvghdpvlaQDMRLMGGLRKY 390
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1829764509 334 LPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGPSLvvFVVSMIATGLTVVYSCRL 394
Cdd:PRK07376  391 MPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEANPAL--WFVGFLTAGMTAFYMFRM 449
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
51-365 1.18e-55

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 198.64  E-value: 1.18e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  51 LLFDFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRFAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYM 130
Cdd:MTH00032   76 LLYDTLSVTMLLVISSISTLVHIYSTSYMSDDPHVPRFLCYLSLFTFLMMVLVTSDNYLQLFIGWEGVGVCSYLLVAFWT 155
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 131 SEKSFNASMLTAL-TNRIGDVAILLCISL----------------WVSCGIFNYGLVSSASVNVLSSALT----LVIIAA 189
Cdd:MTH00032  156 TRIQANKAAIKAIvVNRVGDVGVILGMVLiyktigsldfltfnggSVGSGIMDRGYYGGGAYESPLAPFAiigiLLLIGC 235
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 190 MTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILLSGWSSWLLAL-GLFTMTMAGAAAIFELDMKK 268
Cdd:MTH00032  236 IGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIITIfGALTAFFAATVGLVQNDLKK 315
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 269 VIALSTLSQLGVMFFSLGM-GQPFMAFFHLISHAYFKAMLFMAAGSIIHTVK-DYQDLRKMGGSLINLPALATVCLVSNL 346
Cdd:MTH00032  316 VIAYSTCSQLGYMVLIIGIeGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSF 395
                         330
                  ....*....|....*....
gi 1829764509 347 SLCGMPFLSGFYSKDLILE 365
Cdd:MTH00032  396 SIMGLPYLTGFYSKDLILE 414
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
12-390 4.80e-53

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 186.12  E-value: 4.80e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  12 ALLLLAILSGGVGFIFMSGGELALEWEAFSAfgqKMTLLLLFDFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRFAAL 91
Cdd:COG0651    36 ASLALLALALALLLQVLAGGPLVYALGGWPA---PFGIVLVADRLSALFLLLTALVALAVLLYSIGYMRHERRGRRFYPL 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  92 VFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSEKSFNASMLTALTNRIGDVAILLCIS-LWVSCGIFNY--- 167
Cdd:COG0651   113 FLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGlLYGATGTLNMadl 192
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 168 -GLVSSASVNVLSSALTLVIIAAMTKSAQIPFSAWLPAAMA-APTPVSALVhSSTLVTAGVYFLVRMNYLIL----LSGW 241
Cdd:COG0651   193 aARLAELDPGLLLAAFALLLVGFGIKAALFPLHFWLPDAYPaAPSPVSALL-SGLLTKVGVYAILRVLTLLFgadpALFL 271
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 242 SSWLLALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPFM---AFFHLISHAYFKAMLFMAAGSIIHTV 318
Cdd:COG0651   272 GTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGlagALFHLLNHALAKALLFLAAGAIERAT 351
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1829764509 319 KDYqDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGPSLVVFVVsMIATGLTVVY 390
Cdd:COG0651   352 GTR-DLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL-LLSSLLTLAY 421
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
28-399 1.63e-49

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 183.97  E-value: 1.63e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  28 MSGGELALEWEAFSAFGqkMTLLLLFDFISLIFLSTVCLISGCVFFYSVSYMGGDMFN-PRFAALVFMFILSMALMILSP 106
Cdd:PRK12644   49 LAGGAPTEVVPWIPSLG--LDLAFRLDALAALMSLLVLGVGALVLLYCARYFDDDEPRlGRFAAELVAFAGAMFGLVTSD 126
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 107 NLISLLLGWDGLGVTSYLLVCYYMSEKSFNASMLTALT-NRIGDVAILL-CISLWVSCGIFNY-GLVSSA-SVNVLSSAL 182
Cdd:PRK12644  127 NLLLLYVFWELTTVLSFLLIGHYAERAASRRAALQALLvTTAGGLAMLVgIIILGQAAGTYRLsELLADPpTGPAVSVAV 206
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 183 TLVIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMN-YLILLSGWSSWLLALGLFTMTMAGAAAI 261
Cdd:PRK12644  207 VLILVGALSKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVARLApGFADVPVWRPTVLVLGLATMLLGGWRAL 286
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 262 FELDMKKVIALSTLSQLGVMFFSLGMGQPFMAFFHL---ISHAYFKAMLFMAAGSIIHTVKDyQDLRKMGGSLINLPALA 338
Cdd:PRK12644  287 RQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLamlLAHALFKAALFLVVGIIDHSTGT-RDIRKLSGLGRRQPVLA 365
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1829764509 339 TVCLVSNLSLCGMPFLSGFYSKDLILESLFVQG----PSLVVFVVSMIATGLTVVYSCRLTLGIF 399
Cdd:PRK12644  366 VVAALAAASMAGLPPLLGFVAKEAALEAVLHDGalgpAGPVVLAGIVLGSILTVAYSLRFLWGAF 430
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
12-399 2.02e-49

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 183.85  E-value: 2.02e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  12 ALLLLAILSGGVgfifMSGGELALEWEAFSAFGQKMTLLLlfDFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRFAAL 91
Cdd:PRK12648   39 ALVLLALLYPAV----AAGEVIRAEIEWLPALGLNLSLRL--DGLAWLFALLILGIGLLVVLYARYYLSPADPVPRFFSF 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  92 VFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYY--MSEKSFNASMLTALTNR-----IGDVAILLCIslwvsCGI 164
Cdd:PRK12648  113 LLLFMGAMLGIVLSGNLILLVVFWELTSLSSFLLIGYWhhRADARRGARMALTVTGAgglalLAGVLLLGHI-----VGS 187
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 165 FNYGLVSSASVNVLSS-----ALTLVIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMnyLILLS 239
Cdd:PRK12648  188 YDLDVVLAAGDLIRAHplyppALVLILLGAFTKSAQFPFHFWLPHAMAAPTPVSAYLHSATMVKAGVFLLARL--WPVLA 265
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 240 GWSSWLLAL---GLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPF---MAFFHLISHAYFKAMLFMAAGS 313
Cdd:PRK12648  266 GTEEWFWIVggaGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLGSPLaavAAIFHIINHATFKASLFMAAGI 345
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 314 IIH---TvkdyQDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLIL-ESLFVQGPSLVVFVVSMIAT---GL 386
Cdd:PRK12648  346 IDHetgT----RDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMFFaETLDTHLLGSLDWLLPVAATlagAF 421
                         410
                  ....*....|...
gi 1829764509 387 TVVYSCRLTLGIF 399
Cdd:PRK12648  422 SVAYSLRFIHDVF 434
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
12-389 1.15e-48

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 180.11  E-value: 1.15e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  12 ALLLLAILSGGVGFI--FMSGGELALEWEAFSAFGqkMTLLLLFDFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRFA 89
Cdd:PRK12647   21 ALLPLALFLYFLSFIpeIAAGETVRGGYAWVPSLG--VNLSFLLDGLSLTFALLITGIGTLIVLYAGGYLKGHPDLGRFY 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  90 ALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSEKSFNASMLTALTNRIGDVAILLC--ISLWVSCGIFNY 167
Cdd:PRK12647   99 SYILLFMASMLGLVLSDNLITLFVFWELTSITSFLLIGFNHEREAARRAALQALLVTGGGGLALLAglILLGNVTGTYSL 178
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 168 GLVSSASVNVLSS-----ALTLVIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYliLLSGWS 242
Cdd:PRK12647  179 SELLASGDVIREHplylaILLLVLGGAFTKSAQFPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNP--VLGGTP 256
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 243 SWLLALGLF---TMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQP--FMAFF-HLISHAYFKAMLFMAAGSIIH 316
Cdd:PRK12647  257 LWQTILPLFgglTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSElaIKAAVlFLVAHSLYKGALFMVAGIIDH 336
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1829764509 317 TVKDyQDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILES-LFVQGPSLVVFVVSMIATGLTVV 389
Cdd:PRK12647  337 ETGT-RDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEAlLEAPLWSLILTVAAVLGNALMVA 409
2a6301s01 TIGR00940
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial ...
26-399 3.38e-48

Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273353 [Multi-domain]  Cd Length: 793  Bit Score: 179.27  E-value: 3.38e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  26 IFMSGGELALEWEAFSAFGQKMTLLLlfDFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRFAALVFMFILSMALMILS 105
Cdd:TIGR00940  48 YTASGGVLHYTIDWVPELGLNFTLYM--DGLALLFSLLITGIGVLVVLYSIYYLSKEEPLPNFYAYLLAFMGAMLGVVLS 125
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 106 PNLISLLLGWDGLGVTSYLLVCYYM-SEKSFNASMLTALTNRIGDVAILLCISL-WVSCGIFNYGLVSSASVNVLSS--- 180
Cdd:TIGR00940 126 DNLILLYVFWELTSIVSFLLISYWHhRAHSRYGAQKSLTITVFGGLAMLGGLILlGKITGSFSIDAVIASADAIRNSplf 205
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 181 --ALTLVIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILLSGWSSWLLAL-GLFTMTMAG 257
Cdd:TIGR00940 206 gtAMVLVLLGAFTKSAQFPFHIWLPDAMEAPTPVSAYLHSATMVKAGLYLLARFTPVFAGTEAWFWIVGLaGLITLLWGS 285
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 258 AAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPFM----------------AFFHLISHAYFKAMLFMAAGSIIHTVKDy 321
Cdd:TIGR00940 286 YFAIFQQDLKGILAFSTISQLGLIMVLLGLGSPSYhyqgddskiyalaavaAVFHLINHATFKGSLFMAAGIIDHETGT- 364
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 322 QDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLF---------VQGPSLVVFVVSMIATGLTVVYSC 392
Cdd:TIGR00940 365 RDIRKLGGLFHIMPITFTLAMIASAAMAGVPPFNGFLSKEMFFAEAItahlvnpfdTVTLGYLFPYVATVASVFTFVYSL 444

                  ....*..
gi 1829764509 393 RLTLGIF 399
Cdd:TIGR00940 445 RFIHGVF 451
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
25-467 6.74e-46

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 168.90  E-value: 6.74e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  25 FIFMSGGELALEWEAFSAFGQKMTLLLLFDFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRFAALVFMFILSMALMIL 104
Cdd:MTH00063   15 FLFLVGVSSSVSLNFLSFGGYSWLINFDFDYVTFGVLLMLLICFYYSLLYTFHYFGGSYASFLLNKLIVLFVLVMGILVL 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 105 SPNLISLLLGWDGLGVTSYLLVCYYMSEKSFNASMLTALTNRIGDVA--ILLCISLWVSCGIFNYGLVssasvnvlssaL 182
Cdd:MTH00063   95 TGDFLSTLIFWEYLGVVSFFLILFYDNFLSLRASVVTLVSSRFGDVClfLLIGLSCWGGSGSFLCCLF-----------F 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 183 TLVIIaamTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILLSGWSSWLLALGLFTMTMAGAAAIF 262
Cdd:MTH00063  164 FLIVF---TKSASFPFISWLLEAMRAPTPVSSLVHSSTLVAAGVWFVMRYDYLLGFSWLSIFFSVLLLLTIFITGVSSLF 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 263 ELDMKKVIALSTLSQLGVMFFSLGMGQPFMAFFHLISHAYFKAMLFMAAGSIIHTVKDYQDLRKMGGSLINLPALATVCL 342
Cdd:MTH00063  241 FSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFMLVGDVMSGSGGSQSSNCVYSSILYGSWNLFYLF 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 343 VSNLSLCGMPFLSGFYSKDLILESLFVQGPSLVVFVVSMIATGLTVVYSCRLtlgiFNLFSGRESYSAEGDSDFFMLGGM 422
Cdd:MTH00063  321 LLVLGLSGVPFIGVFFSKHFLLSSFSSVVFNVSLLLVVILCVFLSYLYSFRL----CLILFGVKSSLSSGVRFLFFNSGL 396
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*
gi 1829764509 423 SILMGPAImgGWWLSGLMPSSLIIFmpLWQKLTVLILVLVSGALA 467
Cdd:MTH00063  397 MVFLWLFI--NYYVFLLLDEVVYLG--VFISLVLLLVQLLGLLVG 437
PRK12650 PRK12650
DUF4040 family protein;
38-399 7.75e-46

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 173.31  E-value: 7.75e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  38 EAFSAFGQKMTLLLLFDFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRFAALVFMFILSMALMILSPNLISLLLGWDG 117
Cdd:PRK12650   62 PDLLGNGVDVNLALRADALSLFFALLALVIGAVVFIYSARYLPRKKGNTSFYLLMTAFMAAMLLLVLADDVVVLFVAWEL 141
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 118 LGVTSYLLVCYYMSEKSfNASMLTALTNRIGDVAILLCISLWVS-CGIFNYGLVSSASVNVLSSALT-----LVIIAAMT 191
Cdd:PRK12650  142 VSLASFFLIARSGSGGE-AGSIRTLILTFFGGLTLLAAVAIAATqTGTTSLSGILHSDVWAEKPGLTtvvavLIAVAAFT 220
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 192 KSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNylILLSG---WSSWLLALGLFTMTMAGAAAIFELDMKK 268
Cdd:PRK12650  221 KSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFS--PVFHDvavWNWLLIIVGMITALMGAVFAVQKTDLKK 298
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 269 VIALSTLSQLGVMFFSLGMGQPF---MAFFHLISHAYFKAMLFMAAGSIIHTVKDyQDLRKMGGSLINLPALATVCLVSN 345
Cdd:PRK12650  299 LTAYSTVSQLGWIVATIGVGTPFaltAAVVHTLAHALFKSSLFMLIGVVDHQAGT-RDIRRLGSLWRRMPFTFVSVTIAA 377
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1829764509 346 LSLCGMPFLSGFYSKDLILESlFVQGP-----SLVVFVVSMIATGLTVVYSCRLTLGIF 399
Cdd:PRK12650  378 LSMAAVPPLFGFVSKEGMLTA-FLEAPggnagVVLLLVGAALGAVFTFAYSARLVLGAF 435
ndhF CHL00025
NADH dehydrogenase subunit 5
56-399 1.56e-45

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 171.23  E-value: 1.56e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  56 ISLIFLSTVCLIsgcVFFYSVSYMGGDMFNPRFAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSEKSF 135
Cdd:CHL00025   95 IMLILITTVGIL---VLIYSDNYMSHDQGYLRFFAYLSFFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIA 171
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 136 -NASMLTALTNRIGDVAILLCIS--LWVS--------CGIFNyGLVSSASVNVLSSAL--TLVIIAAMTKSAQIPFSAWL 202
Cdd:CHL00025  172 aNACQKAFVTNRVGDFGLLLGILgfYWITgsfefrdlFEIFN-NLIYNNEVNLLFATLcaFLLFLGPVAKSAQFPLHVWL 250
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 203 PAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILLSGWSSWLLAL-GLFTMTMAGAAAIFELDMKKVIALSTLSQLGVM 281
Cdd:CHL00025  251 PDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLISLiGIITALLGATLALAQKDIKRGLAYSTMSQLGYM 330
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 282 FFSLGMGQPFMAFFHLISHAYFKAMLFMAAGSIIH---TVKDY-----QDLRKMGGSLINLPALATVCLVSNLSLCGMPF 353
Cdd:CHL00025  331 MLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHsmePIVGYspdksQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPP 410
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1829764509 354 LSGFYSKDLILESLFVQGPSLVvfVVSMIATGLTVVYSCRLTLGIF 399
Cdd:CHL00025  411 LACFWSKDEILNDSWLYSPIFA--IIAWSTAGLTAFYMFRIYLLTF 454
PRK12646 PRK12646
DUF4040 family protein;
51-399 5.62e-45

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 169.94  E-value: 5.62e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  51 LLFDFISLIFLSTVCLISGCVFFYSVSYMGGDMFN-PRFAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYY 129
Cdd:PRK12646   74 LRLDGLSLMFSLIISLIGIAVFFYATQYLSSRKDNlPRFYFYLTLFMFSMIGIVLSDNTILMYVFWELTSVSSFLLISYW 153
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 130 MSEK-SFNASMLTALTNRIGDVAILL-CISLWVSCGIFNYGLVSSASVNVLSSAL-----TLVIIAAMTKSAQIPFSAWL 202
Cdd:PRK12646  154 YNNGdSQFGAIQSFMITVFGGLALLVgFIMLYIMTGTNNITEILGQADHIKNHGLfipmiFMFLLGAFTKSAQFPFHIWL 233
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 203 PAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILLSGWSSWLLA-LGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVM 281
Cdd:PRK12646  234 PRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSNMYIYIVTfVGLITMLFGSITALKQWDLKGILAYSTISQLGMI 313
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 282 FFSLGMGQP-----------------FMAFFHLISHAYFKAMLFMAAGSIIHTVKDyQDLRKMGGSLINLPALATVCLVS 344
Cdd:PRK12646  314 MAMVGIGGGyaqhqqdaiasiyvfvlFAALFHLMNHAIFKCALFMGVGIIDHEAGT-RDIRILSGMRQLFPKMNLVMTIA 392
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1829764509 345 NLSLCGMPFLSGFYSKDLILESL--------FVQGPSLVVFVVSMIATGLTVVYSCRLTLGIF 399
Cdd:PRK12646  393 ALSMAGVPFLNGFLSKEMFLDALtqtgqlsqFSLISMIIIVFIGVIASIFTFTYALYMVKEVF 455
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
28-399 1.48e-41

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 160.09  E-value: 1.48e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  28 MSGGELALEWEAFSAFGQKMTLLLlfDFISLIFLSTVCLISGCVFFYSVSYMGGDMFN-PRFAALVFMFILSMALMILSP 106
Cdd:PRK12645   53 MSGNTVMKTLPWIPSLGINFTLYV--DGLSLLFALLITGIGSLVVLYSIYYLSKKKEQlGNFYVYLLLFMGAMLGVVLSD 130
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 107 NLISLLLGWDGLGVTSYLLVCY-YMSEKSFNASMLTALTNRIGDVAILLCIS-LWVSCGIFNY-GLVSSASVNVLSS--- 180
Cdd:PRK12645  131 NLIVLYLFWELTSISSFLLISYwYEREASRYGAQKSMLITVFGGLSMLGGFIlLYIMTGSFSIrEMIANADEIQNSPlfi 210
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 181 -ALTLVIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILLSGWSSWLLAL-GLFTMTMAGA 258
Cdd:PRK12645  211 pAMILILLGAFTKSAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGIYLVARFTPIFAGSQVWFWTVTLvGLITLFWGSL 290
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 259 AAIFELDMKKVIALSTLSQLGVMFFSLGMGQP----------------FMAFFHLISHAYFKAMLFMAAGSIIHTVKDyQ 322
Cdd:PRK12645  291 NAVKQTDLKGILAFSTVSQLGLIMSLLGIGAAslhyqgddskiyaaaiTAAIFHLINHATFKGSLFMIVGIVDHETGT-R 369
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 323 DLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLF---------VQGPSLVVFVVSMIATGLTVVYSCR 393
Cdd:PRK12645  370 DIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSKEMFFESMLnateanlfsLDTWGVLFPVIAWVASVFTFVYSII 449

                  ....*.
gi 1829764509 394 LTLGIF 399
Cdd:PRK12645  450 FIFKTF 455
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
105-380 3.86e-41

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 150.16  E-value: 3.86e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 105 SPNLISLLLGWDGLGVTSYLLVCYYM-SEKSFNASMLTALTNRIGDVAILLCISL------WVSCGIFNYGLVSSASVNV 177
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGkSPRSSEAGMKYFLLTLLGSSILLFGISLmynytgTLSFDELSKALTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 178 LSSALTLVIIAAMTKSAQIPFSAWLPAA-MAAPTPVSALVhSSTLVTAGVYFLVRMNYLILLSG--WSSWLLALGLFTMT 254
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAyEGAPTPVSALL-AATLVKAGGYGLIRRSLLYLPSSpfIQQILLILAIISML 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 255 MAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPF---MAFFHLISHAYFKAMLFMAAGSIIHTVKDYQDLRKMGGSL 331
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLA 239
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1829764509 332 INLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGPSLVVFVVS 380
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGV 288
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
13-368 1.31e-37

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 145.12  E-value: 1.31e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  13 LLLLAILSGGVG-FIFMSGGELALEWEAFSaFGQKMTLLLLFDFISLIFLSTVCLISGCVFFYSVSYMG-------GDMF 84
Cdd:PRK06525   33 FAALTTLCMLSLaYAFYQAGKVAVTLTLVN-LGDVALFGLVIDPVSVLIGFVVVLLGLLVTLYSTGYMSpgnrehpVHEG 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  85 NPRFAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSEKSFNASMLTALTNRIGDVAILLCIS-LWVSCG 163
Cdd:PRK06525  112 TGRYYAFLLLFIGAMAGLVYSSTLLGLLLFFEITGLCSWALISYYQSPKALRSALKALLITHIGSLGLYLAAAtLFLQTG 191
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 164 IFNYGLVSSASVNVLSSALTLVIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVR----MNYLILLS 239
Cdd:PRK06525  192 TFALSALSGLHGSLKYLVFLGILFAAWGKSAQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARaiqsMGPIPHVI 271
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 240 GWSswLLALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMG--QPFMAF----FHLISHAYFKAMLFMAAGS 313
Cdd:PRK06525  272 GYV--GAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAilGSRLALegsiAYIFNHAFAKSLFFLVAGA 349
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1829764509 314 IIHTVKDyQDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLF 368
Cdd:PRK06525  350 LSYSCGT-RLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAGF 403
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
74-399 4.33e-36

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 143.82  E-value: 4.33e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  74 YSVSYMGGDMFNPRFAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMS--EKSFNASMLTALTNRIGDVA 151
Cdd:PRK12649   99 YSNGYMSHKEDLPRYYQYLLLFMGSMIGMVFSGNTIQLFIFWELTSITSFMLIGYWRHrpESVYGATKSLLITAGGGLFM 178
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 152 ILLCISLWVSCGIFNYGLV--SSASVNVLSS------ALTLVIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVT 223
Cdd:PRK12649  179 FAGFLLLHVITGTYDIATIlqDSELIENIKGhplfliTLILIFIGAAAKSAQGPFYIWLPNAMEAPTPVSAFLHSATMVK 258
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 224 AGVYFLVRMNylILLSGWSSWLL---ALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMG---QPFMAF--- 294
Cdd:PRK12649  259 AGVYLVARIH--PIFSGTEAWFIlvsGTGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTMYGYTtyhEPGLGVaaa 336
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 295 -FHLISHAYFKAMLFMAAGSIIHTVKDyQDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLF----- 368
Cdd:PRK12649  337 tFHLLNHATFKACLFLVAGIVAHEAAT-RDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYETSVemgal 415
                         330       340       350
                  ....*....|....*....|....*....|..
gi 1829764509 369 VQGPSLVVFVVSMIATG-LTVVYSCRLTLGIF 399
Cdd:PRK12649  416 IGGPFTIIIPAVAVLGGvFTFAYSIKLIDGIF 447
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
54-383 8.02e-32

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 130.39  E-value: 8.02e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  54 DFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRFAALVFM--FILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMS 131
Cdd:PRK06521   79 DALSAFFLLVISLLGAAASLYSLGYFREYEGKGPGAMGFFYnlFLASMVLVLLADDAFSFLVAWETMSLSSWFLVIANHR 158
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 132 EKS-FNASMLTALTNRIGDVAILLCISL-WVSCGIFNYGLVSSASVNVL--SSALTLVIIAAMTKSAQIPFSAWLPAAM- 206
Cdd:PRK06521  159 EAEiRRAGFLYLLMAHAGALAILLAFGLlARESGSYDFAAMRAAHLSPFwaSLVFLLALFGFGAKAGLVPLHVWLPRAHp 238
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 207 AAPTPVSALVhSSTLVTAGVYFLVRMNYLIL---LSGWSSWLLALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFF 283
Cdd:PRK06521  239 AAPSHVSALM-SGVMLKVAIYGILRVVFDLLgapGWWWGVLVLALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIFV 317
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 284 SLGMGQPFMA--------------FFHLISHAYFKAMLFMAAGSIIHTVKDyQDLRKMGGSLINLPALATVCLVSNLSLC 349
Cdd:PRK06521  318 GLGLAMVFIAygmpllaalaltaaLYHLLNHALFKSLLFLGAGAVLHATGT-RDMEKLGGLIRRMPWTAWAFLIGCLAIS 396
                         330       340       350
                  ....*....|....*....|....*....|....
gi 1829764509 350 GMPFLSGFYSKDLILESLFvQGPSLVVFVVSMIA 383
Cdd:PRK06521  397 ALPPLNGFVSEWLLLQSLL-SSPGLPQWGLKLAV 429
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
54-399 1.03e-31

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 128.07  E-value: 1.03e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  54 DFISLIFLSTVCLISGCVFFYSVSYmgGDMFNPRFAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSEK 133
Cdd:PRK08375   76 DSLSALFLLVTSILAIAALLYAIGY--GEHRQTRFYALFLLLLAGLLGALLTADLFNLFVFLEIMSLSSYALVAMGGDRR 153
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 134 SFNASMLTALTNRIGDVAILLCISL-WVSCGIFNYGLVSS--ASVNVLSSALTLVIIAAMTKSAQIPFSAWLPAAMAAPT 210
Cdd:PRK08375  154 ALAAARKYLIVGLIGSTFLLIGVGLlYGVTGTLNMADLAGalAENPTVVTAFGFVLLALALKAAVFPLHTWLPRAYPAAP 233
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 211 PVSALVHSSTLVTAGVYFLVRMNYLIL------LSGWSSWLLALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFS 284
Cdd:PRK08375  234 PVVTALLSGLVTKVAVYALIRIYFTVFggdfrfALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLG 313
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 285 LGMGQPFM---AFFHLISHAYFKAMLFMAAGSIIHTVKDyQDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKD 361
Cdd:PRK08375  314 LALLTPLAlaaGLLHLLHHALMKGALFLAAGAIEVTYGT-RRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKW 392
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1829764509 362 LILESLFVQGpSLVVFVVSMIATGLTVVYSCRLTLGIF 399
Cdd:PRK08375  393 YLVVGAVEAG-QWLVLAVLLASSLLALLYFLRIWYRAF 429
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
3-383 5.19e-31

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 127.54  E-value: 5.19e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509   3 SLLFFTVSQALLLLAilsgGVGFIFMSGGELALEWEAFSAFGqkmtLLLLFDFISLIFLSTVCLISGCVFFYSVSYMGGD 82
Cdd:PRK08667   33 SVLWLVIAIALLLFA----GSLQLFTGNPLDIPLWGIAPGLD----ITFHIDRLAAFFIILIGLVSLCVAIYSLGYNEHM 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  83 MFNPR---FAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCY-YMSEKSFNASMLTALTNRIGDVAILL-CIS 157
Cdd:PRK08667  105 SSNERanlLSALTALFILSMLGVVASANTFSFLFFWEIMALSSFFLVMNdYQEEETQRAGIFYFVMTQLSTVFLMLgIIV 184
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 158 LWVSCGIFNYGLVSSASVnVLSSALTLVIIAAMTKSAQIPFSAWLPAAM-AAPTPVSALVhSSTLVTAGVYFLVR--MNY 234
Cdd:PRK08667  185 LFIQTGSFELSPLGASAG-ILSLVFLLLFLGFGIKAGIIPFHKWLPYAHpASPSNVSALM-SGVMLKVAVYGLVRflMDV 262
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 235 LILLSGWSSWLLALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGM-------GQPFMAF-------FHLISH 300
Cdd:PRK08667  263 LSPELWWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLyvifgvyGLDTLALlalggalFHSLNH 342
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 301 AYFKAMLFMAAGSIIHTVKDyQDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLF----VQGPSLVV 376
Cdd:PRK08667  343 ALFKSLLFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYESFFqsfsVADPLIKI 421

                  ....*..
gi 1829764509 377 FVVSMIA 383
Cdd:PRK08667  422 LLFSVLA 428
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
49-402 4.46e-28

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 117.61  E-value: 4.46e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  49 LLLLFDFISLIFLSTVCLISGCVFFYSVSYMGGDMF--NPRFAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLV 126
Cdd:PRK06589   77 IGLHLEPLGLIFLLLIGFLWICALLYTPKYLAINNIdsSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLI 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 127 CYymsekSFNASMLTALTNRIGDVAILLCISLWVSCGI----FNYGLVSSASV--NVLSSALTLVIIAAMTKSAQIPFSA 200
Cdd:PRK06589  157 GH-----TRNNISLSGGYKYLKILMISALLLFLPAVILiytkTGNLDFVSGGLfsKNQSIILLLMFIYGIAKTAIFPVHS 231
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 201 WLPAAMAAPTPVSALVHSSTLVTAGVYFLVR-------MNYLILLSGWSSWLLALGLFTMTMAGAAAIFELDMKKVIALS 273
Cdd:PRK06589  232 WLPAAMVAHYPVSALLHAVIVVKTGLFCIYKillyifgLSYLQRIFAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYS 311
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 274 TLSQLGVMFFSLGMGQPF---MAFFHLISHAYFKAMLFMAAGSIIhTVKDYQDLRKMGGSLINLPALATVCLVSNLSLCG 350
Cdd:PRK06589  312 TISQLSLALLSAFILTPKalgAAILHLVSHSFAKICLFYSMGSIY-SLKKEDQVDKLHGTSKSFPLISFIISISSLSLIG 390
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1829764509 351 MPFLSGFYSKDLILESLFVQGPSLVVFVVSMIATGLTVVYSCRLTLGIFNLF 402
Cdd:PRK06589  391 IPIFSGFISKFLILLAASEQNQPWLSIIVMLVVIASSILSALYLLKILSSIY 442
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
54-411 1.54e-27

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 116.22  E-value: 1.54e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  54 DFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRFAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSEK 133
Cdd:PRK12667   81 DLLGALLGLLTALVMFLILIYSYWYLEHESGPEWYYTLLLGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLVAYYRDRG 160
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 134 -SFNASMLTALTNRIGDVAILL-CISLWVSCGIFNYGLVSSAS---------------VNVLSSALTLVIIAAMTKSAQI 196
Cdd:PRK12667  161 dAVEAAIKYALIGAVGTTLYFLaLAFLYATFGTLNMADLSAKIrglsfpltgglagnpPLALGVALALALWAFTIKAAIF 240
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 197 PFSAWLPAAM-AAPTPVSALVhSSTLVTAGVYFLVRMNYLI---------LLSGWSSWLLALGLFTMTMAGAAAIFELDM 266
Cdd:PRK12667  241 PNHFWLPDAHpAAPSPVSAML-SGLVVNVGAYAIIRFLYTIfgispslidFRAALSPILIILGAVSAIIGALMMVVQKDV 319
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 267 KKVIALSTLSQLGVMFFSLGMGQPFM---AFFHLISHAYFKAMLFMAAGSIIHTVKDyQDLRKMGGSLINLPALATVCLV 343
Cdd:PRK12667  320 KRLLAYSTISHMGYIFMGIGIGTQLGlaaALFHIINHAIAKSLLFLASGVFIHAAGT-RDIDELAGLGRKMPIASFAFLI 398
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1829764509 344 SNLSLCGMPFLSGFYSKDLILESLFVQGPSLVVFVVsMIATGLTVVYSCRLtlgIFNLFSGRESYSAE 411
Cdd:PRK12667  399 GALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVL-LIASAISLVGYFRA---WYSLFFGKPKSGEE 462
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
15-390 6.13e-27

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 115.01  E-value: 6.13e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  15 LLAILSGGVGFI-FMSGGELALEWEAFSAFGqkmtLLLLFDF-ISLIFLSTVCLISGCVFF---YSVSYMGGDMFNPRFA 89
Cdd:PRK07390   48 LLAFVHSLLALRaIWNQPPQQLSFPWLQVAD----LDLSLSLeISPVTLGALELITGLSLLaqiYALGYLEKDWGLARFF 123
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  90 ALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYmseksFNASM-LTA-----LTNRIGDVAILL-CISLWVSC 162
Cdd:PRK07390  124 ALLGFFEAAMSGLALSDSLFFSYVLLEILTLSTYLLVGFW-----YAQPLvVTAardafLTKRVGDLLLLMgVVALSPLA 198
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 163 GIFNYGLVS--SASVNVLSSALTLVIIA----AMTKSAQIPFSAWLPAAMAAPTPVSALvHSSTLVTAGVYFLVRMNYLI 236
Cdd:PRK07390  199 GTLNFSDLAawAATANLDPLTATLLGLAliagPTGKCAQFPLHLWLDEAMEGPNPASIL-RNSVVVATGAWVLIKLQPVL 277
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 237 LLSGW-SSWLLALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPFMAFFHLISHAYFKAMLFMAAGSII 315
Cdd:PRK07390  278 ALSPVaLTVLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKALLFMSVGSII 357
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1829764509 316 HTVKDyQDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGPSLV---VFVVSMIATGLTVVY 390
Cdd:PRK07390  358 LTTIT-QDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWALLRLADGLWAVSPWLVgvlLLVNALTAFNLTRVF 434
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
54-425 8.71e-25

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 107.88  E-value: 8.71e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  54 DFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRFAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSE- 132
Cdd:PRK08376   89 DLFGAFMALIATIVSFLAVLYSISYMKHDTGLDKYYTLILLLELGMLGMAITGDLFNFFVFLEIMSIASYALVAFRNDTw 168
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 133 KSFNASMLTALTNRIGDVAILLCIS-LWVSCGIFNYGLV----SSASVNVLSSALTLVIIAAMTKSAQIPFSAWLPAAM- 206
Cdd:PRK08376  169 EAIEAGIKYMFVGSLASSMVLLGIAlLYGQYGTLNMAYLavkmSENPTVVAKIALALFIAGLAMKSGAVPVHMWLPDAYp 248
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 207 AAPTPVSALVHSSTLvtAGVYFLVRMNYLILLSGWSS----WLLA-LGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVM 281
Cdd:PRK08376  249 AAPSSISAMLLVIKQ--AGLYALARVLFSIYGPAINLatvgWVIIiLGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYM 326
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 282 FFSLGMG-----QPFM----------AFFHLISHAYFKAMLFMAAGSIIHTVKDyQDLRKMGGSLINLPALATVCLVSNL 346
Cdd:PRK08376  327 LLGLGVGlaalgDPAMasygeialagGIYHIVNHALYKALLFLTAGAVIYETGT-RNLNELGGLARTMPKTTIAFLIGAA 405
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 347 SLCGMPFLSGFYSKDLILESLFVQGPSLVVFvvSMIATGLTVVYSCRLtlgIFNLFSGRES--YSAEGDSDFFMLGGMSI 424
Cdd:PRK08376  406 AIVGLPPFNGFASKWLIYESSALFNPILGVI--AMIGSVLTLASFVKV---FHTAFFGPPSekVMNVKEPPKPMLVPMLI 480

                  .
gi 1829764509 425 L 425
Cdd:PRK08376  481 L 481
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
87-394 3.23e-24

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 106.00  E-value: 3.23e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  87 RFAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSEKSFNASMLTALTNRIGDVAILLCISL-WVSCGIF 165
Cdd:PRK08377  109 KYAMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALiYGATGTL 188
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 166 NYG----LVSSASVNVLSSALTLVIIAAMTKSAQIPFSAWLPAA-MAAPTPVSALVhSSTLVTAGVYFLVRMNYLI-LLS 239
Cdd:PRK08377  189 NMAhiaqLAGTIDPTVAQVGLALLIFGLAVEAELFPLNAWAPDAyQAAPHPITVMF-SAFVVKAGLYAMARILYLMqNAN 267
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 240 GWSSWL---LALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPF---MAFFHLISHAYFKAMLFMAAGS 313
Cdd:PRK08377  268 GWSSVLklvIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAgvdAGVFHMINHAIVKALLFLAVGY 347
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 314 IIHTVKDyQDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGPSLVVFVVsMIATGLTVVYSCR 393
Cdd:PRK08377  348 VGITLGG-TEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLSAGYTWPVALV-LGASVVEAVYYFR 425

                  .
gi 1829764509 394 L 394
Cdd:PRK08377  426 L 426
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
13-367 4.75e-23

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 102.34  E-value: 4.75e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  13 LLLLAILSGGVGFIFMSGGElALEWEAFSAFGqkmtLLLLFDFISLIFLSTVCLISGCVFFYSVSYMGgdmfNPRFAALV 92
Cdd:PRK07234   30 ALGMAIVSAVYALGLVASMV-PLELTLLDNFG----VTLRADALSGYFILTNALVTLAVIFYCWESAK----TRFFYAQL 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  93 FMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSEKSFNASMLTALTNRIGDVAILLCISL-WVSCGIFNYGLVS 171
Cdd:PRK07234  101 LILHGSVNAAFVCADLISLYVALEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLvYQANGTFAFSGLA 180
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 172 SASvnvlSSALTLVIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMnyLILLSGWSSWLLALGLF 251
Cdd:PRK07234  181 TAD----PEAFALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRC--ALDVPGLDLIVRIFGVG 254
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 252 TMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSlgmgqPFMAFFHLISHAYFKAMLFMAAGsIIHTVKDYQDLRKMGGSL 331
Cdd:PRK07234  255 TALLGVLFALLEKDLKRMLAFSTISQLGFILAA-----PLVGGLYALAHGLVKSTLFLCAG-ALPSRNFTELISQMLGIG 328
                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1829764509 332 INLPalatvCLVSNLSLCGMPFLSGFYSKDLILESL 367
Cdd:PRK07234  329 KWIP-----LTMASFSIAGFPLLAGFVSKVLTLKNL 359
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
9-315 6.13e-23

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 102.47  E-value: 6.13e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509   9 VSQALLLLAILSGGVGFIFmsggeLALEWEAFSafgqkmTLLLLFDFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRF 88
Cdd:PRK08168   34 IAQAASLAGLFLALLGLVL-----FATGAAWPA------AAWLEVSGLGLVMAALVQLLGWVIGRFSHRYLQGEPGQRRY 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  89 AALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSEKsfnASMLTA----LTNRIGDVAILLCISLW---VS 161
Cdd:PRK08168  103 VRALAGVLAAVHLLVLSDHLLVLIAAWAAISLALHRLLCFYPDRP---FARLAAhkkfIADRLAELLLLAAAALAyleVG 179
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 162 CGIFNYGLVSSASVNVLSS---ALTLVIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSStLVTAGVYFLVRMNYLILL 238
Cdd:PRK08168  180 SLSLSALWAHLAAQGASPSlqaAALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAG-VVNLGGFVLIRFAPLLEQ 258
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1829764509 239 SGWSSWLL-ALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPFMAFFHLISHAYFKAMLFMAAGSII 315
Cdd:PRK08168  259 APPARWLLvLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYELALLHLVAHSLYKAHAFLSASEAV 336
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
38-435 4.27e-22

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 100.07  E-value: 4.27e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  38 EAFSAFGQKMTLLLLFDFISLIFLSTVCLISGCVFFYSVSYmgGDMFNPRFAALVFMFILSMALMILSPNLISLLLGWDg 117
Cdd:PRK08668   52 EKLTLFFGGFKLTFTLTHLSWFFAMISLLVIFSVAFFMVSE--KTKNDAYFNMFALMSLAGVLGVFLANDLLTLYIFWE- 128
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 118 LGVTSYLLVCYYMSEKSFNASMLTALTNRIGDVAILLCI-SLWVSCGIFNYGLVSSASVNVLSSALTLVII-----AAMT 191
Cdd:PRK08668  129 IMTFSSFMMVPMGKKESRKASLKYFVLSAIGAYAMLYAIfLIYAKTGTFDFADISQGLINDTSTGFALIVFlfllaFGVA 208
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 192 KSAQIPFSAWLPAAMA-APTPVSAlVHSSTLVTAGVYFLVRMNYLILLSGWSSW-------------LLALGLFTMTMAG 257
Cdd:PRK08668  209 KAGIFPLHVWAPDAYSeAPQSFSA-VLSGQLSKLGAYGFLLVLYVLPGTKLFSEfgtyrgvplfnyiLAWLGNISIIVGT 287
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 258 AAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPFM---AFFHLISHAYFKAMLFMAAGSIIHTVKDYQdLRKMGGSLINL 334
Cdd:PRK08668  288 LMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfagGLFHVFNHALFKGLFFLIFAAVIYRTGTTK-ISEMGGLIEKM 366
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 335 PALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGPSLVVFVVsMIATGLTVVYSCRLTLGIFnLFSGRESYSAEGDS 414
Cdd:PRK08668  367 PFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA-FFGSIGSFLYVFRPLAGVF-LGQLPSDHKDVKEA 444
                         410       420
                  ....*....|....*....|.
gi 1829764509 415 DFFMLGGMSILMGPAIMGGWW 435
Cdd:PRK08668  445 PLPMLIPMAILVLLNVVFGVA 465
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
108-425 7.91e-21

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 96.12  E-value: 7.91e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 108 LISLLLGWDGLGVTSYLLVCYYMSEKSFNASMLTALTNRIGDVAILLCISLWVS-CGIFNYGLVSSASvnvlSSALTLVI 186
Cdd:PRK12668  115 LLTLFVFWELMAFTSTFLVWARGTKAAVRAGFRYLLVHVLGGVLLLAGILLHYAeTGSFAFGAIAGLG----GTAAWLIL 190
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 187 IAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMnylilLSGWSsWLLALGLFtMTMAGAA-AIFELD 265
Cdd:PRK12668  191 IGFGVNAAFPPLHAWLPDAYPEATVTGSVFLSAFTTKTAVYALARA-----FPGTE-LLIYIGAA-MAVYGVFfALLEND 263
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 266 MKKVIALSTLSQLGVMFFSLGMGQPFM---AFFHLISHAYFKAMLFMAAGSIIHTVKDyQDLRKMGGSLINLPALATVCL 342
Cdd:PRK12668  264 LRRLLSYHIVSQVGYMVAGIGIGTALAingAVAHAFNHILYKGLLFMSAGAVLYRTGT-EKLTELGGLYRSMPLTALFCL 342
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 343 VSNLSLCGMPFLSGFYSKDLILESLFVQGPSLVVFVVSMIATGltVVYSCRLTLGIFNLFSGRESYSAEgDSDFFMLGGM 422
Cdd:PRK12668  343 VGALSISAFPLFSGFVSKSMIISAAGEDHYVWVWLLLLLASAG--TFLHFGIKLPYFAFFGGDSGLRVK-DAPRNMLVAM 419

                  ...
gi 1829764509 423 SIL 425
Cdd:PRK12668  420 GIA 422
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
184-391 1.09e-19

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 92.32  E-value: 1.09e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 184 LVIIAAMTKSAQIPFSAWLPAA-MAAPTPVSALVhSSTLVTAGVYFLVRMNYLILLSGWS---SWLLALGLFTMTMAGAA 259
Cdd:PRK07691  214 LFLFVFATKAGLFPLYFWLPGSyYAPPIAIAALF-GALLTKVGVYAIARTFTLFFSHDTSfthYLILILALLTIIFGVIG 292
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 260 AIFELDMKKVIALSTLSQLGVMFFSLGMGQPFM---AFFHLISHAYFKAMLFMAAGSIIHTVKdYQDLRKMGGSLINLPA 336
Cdd:PRK07691  293 AVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGmigAIYYLIHDMIVKAALFLLIGIMIKITG-TTDLKKMGGLIKRYPV 371
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1829764509 337 LATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGPSLVVFVVsmIATGLTVVYS 391
Cdd:PRK07691  372 LGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIV--LLSSLLVLYS 424
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
197-394 3.61e-18

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 87.44  E-value: 3.61e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 197 PFSAWLP-AAMAAPTPVSALvHSSTLVTAGVYFLVRMNYLIL---LSGWSSWLLALGLFTMTMAGAAAIFELDMKKVIAL 272
Cdd:COG1008   227 PFHTWLPdAHVEAPTAGSVL-LAGVLLKMGGYGLLRFALPLFpeaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAY 305
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 273 STLSQLGVMFFSLGMGQPFM---AFFHLISHAYFKAMLFMAAGSIIHTVKDYqDLRKMGGSLINLPALATVCLVSNLSLC 349
Cdd:COG1008   306 SSVSHMGFVLLGIFALNPLGlqgAVLQMVSHGLITAALFLLVGVLYDRTHTR-DIADLGGLAKRMPVLAALFLLAALASL 384
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1829764509 350 GMPFLSGFYSKDLILESLFVQGPslVVFVVSMIATGLTVVYSCRL 394
Cdd:COG1008   385 GLPGTSGFVGEFLVLLGAFQVNP--WLAILAALGLILTAAYLLWM 427
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
168-383 1.30e-15

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 79.41  E-value: 1.30e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 168 GLVSSASVNVLSSALTLVIIAAMTKSAQIPFSAWLPAAMA-APTPVSALVhSSTLVTAGVYFLVRMNYLILLSG----WS 242
Cdd:PRK08676  195 AHASLLSPSVLGASFLFIFIGFLAKSGLVPFHTWLPAAYAkAPSVVSALL-SGTVLNIGIYGILRLSALLRQSGaaeqFS 273
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 243 SWLLALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQP---FMAFFHLISHAYFKAMLFMAAGsIIHTVK 319
Cdd:PRK08676  274 NVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPlalFWMLFHMLAHSLVKSGLFFSAG-ILHRQY 352
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1829764509 320 DYQDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGPSLVVFVVSMIA 383
Cdd:PRK08676  353 RSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLL 416
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
176-392 2.07e-15

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 78.82  E-value: 2.07e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 176 NVLSSALTLVIIAAMTKSAQIPFSAWLPAAMA-APTPVSALVhSSTLVTAGVYFLVRMNYLILLSGWSSW----LLALGL 250
Cdd:PRK06458  211 TLMKLAFVFLLIGFGTKVGLFPMHAWLPDAHSeAPSPVSALL-SGVLLNVALYAVLRYYILIDAAIGSDFpgrlLLIFGL 289
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 251 FTMtmaGAAAIFEL---DMKKVIALSTLSQLGVMFFSLGMGQP---FMAFFHLISHAYFKAMLFMAAGSIIHtVKDYQDL 324
Cdd:PRK06458  290 LSV---LVAAFFLLrqrDIKRLFAYSSIEHMGLIAFALGIGGPlgiFAALLHMLNHSLTKSAIFFASGNVLQ-KYGTRDI 365
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1829764509 325 RKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGPSLVVFVVsmiATGLTVVYSC 392
Cdd:PRK06458  366 NVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLARGPLLIAILL---LLLLTLAFAA 430
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
184-315 2.69e-14

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 75.46  E-value: 2.69e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 184 LVIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSStLVTAGVYFLVRMNYLILLSGWSSWLLALGLFTMTMAGAAAIFE 263
Cdd:PRK08601  209 LLILAVMIPAAQWPFQRWLIESAVAPTPVSAIMHAG-LVNAGGIMLTRFSPLFHDDIAQILLLIFASISVLIGTGISLVQ 287
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1829764509 264 LDMKKVIALSTLSQLGVMFFSLGMGQPFMAFFHLISHAYFKAMLFMAAGSII 315
Cdd:PRK08601  288 VDYKRQLVGSTMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFLQSGSAV 339
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
52-366 9.42e-13

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 70.45  E-value: 9.42e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  52 LFDFISLIFLSTVCLISGCVFFysvSYMGGDMFNPRFAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMS 131
Cdd:PRK06277   69 LFNPAKQIIIFVLSLIASLVLI---TGLGEKKSSGLYVFLMLMGLASVSAIVLADDIFNLYVFFEIAAIVQVGLVIASGT 145
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 132 EKSFNASMLTALTNRIGDVAILLCISLWVSC-------GIFNYGLVSSASVNVLSSALtLVIIAAMTKSAQIPFSAWLPA 204
Cdd:PRK06277  146 EEAYKAALKYMILGNVAGSILLLGIGFLLAStgtlnitDIHNALLVNPTSPVIYGGLL-LLIFGLLYGSGLPPFHTIKSD 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 205 AMAAPTP-VSALVHSS---TLVTAGVYFLVRMNYLILLSGWSSWLLALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGV 280
Cdd:PRK06277  225 IYAKAKPfGSALLQTFskfVLVALMLVIFKLFGGLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGY 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 281 MFFSLGMGQPF---MAFFHLISHAYFKAMLFMAAGsIIHTVKDYQDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGF 357
Cdd:PRK06277  305 VAAGLALGTPLgivAGIFHAINHVIYKSALFLGAG-IVSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGF 383

                  ....*....
gi 1829764509 358 YSKDLILES 366
Cdd:PRK06277  384 QSKLMLAQA 392
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
196-373 2.33e-12

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 69.47  E-value: 2.33e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 196 IPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNyliLLSG-----WSSWLLALGLFTMTMAGAAAIFELDMKKVI 270
Cdd:PRK08042  197 IPLHGWVPQAHANASAPAAALFSTVVMKIGLLGILTLS---LLGGnaplwWGVALLVLGMITAFVGGLYALMEHNIQRLL 273
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 271 ALSTLSQLGVMFFSLGMG-------QPFM-------AFFHLISHAYFKAMLFMAAGSIIHTVkDYQDLRKMGGSLINLPA 336
Cdd:PRK08042  274 AYHTLENIGIILLGLGAGvtgialeQPALialglvgGLYHLLNHSLFKSVLFLGAGSVWFRT-GHRDIEKLGGIGKKMPV 352
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1829764509 337 LATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGPS 373
Cdd:PRK08042  353 ISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFKLSNS 389
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
5-379 3.66e-12

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 68.60  E-value: 3.66e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509   5 LFFTVSQALLLLAILSGGvgfifmsggeLALEWEAFSAFGQkmtlLLLFDFISLIFLSTVCLISGCVFFYSVSYM-GGDM 83
Cdd:COG1007    34 LLAGLALLGLLLALALLL----------LALGGGTGTAFGG----MFVVDGFALFFKLLILLAALLVLLLSRDYLeRRGL 99
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  84 FNPRFAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCY-YMSEKSFNASMLTALTNRIGDVAILLCISLWvsc 162
Cdd:COG1007   100 LRGEFYALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAFrRDDRRSSEAALKYFLLGALSSGFLLYGISLL--- 176
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 163 gifnYGLVSSASVNVLSSALT--------------LVIIAAMTKSAQIPFSAWLP-AAMAAPTPVSALVhsSTLV-TAGV 226
Cdd:COG1007   177 ----YGATGSLNLAGIAAALAagganspllllglvLVLAGLAFKLSAVPFHMWTPdVYEGAPTPVTAFL--ATAPkIAAF 250
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 227 YFLVRMNYLILLSGWSSW---LLALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPFM---AFFHLISH 300
Cdd:COG1007   251 AALLRLLVEAFPGLAADWqllLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGvsaALFYLLAY 330
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 301 AYFKAMLFMAAGSIIHTVKDYQDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQG-PSLVVFVV 379
Cdd:COG1007   331 LFMNLGAFAVILLLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGlYWLAVIAV 410
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
184-390 3.87e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 68.84  E-value: 3.87e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 184 LVIIAAMTKSAQIPFSAWLPAAM-AAPTPVSAlVHSSTLVTAGVYFLVRMNYLILLSGwSSW--LLALGLFTMTMAGAAA 260
Cdd:PRK12665  214 VLLVAFGIKAAVFPLSFWLPDSYpTAPAPVTA-VFAGLLTKVGVYAIIRTHTLLFPGG-GLDtlLMVVALLTMVVGILGA 291
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 261 IFELDMKKVIALSTLSQLGVMFFSLGMGQPF---MAFFHLISHAYFKAMLFMAAGsIIHTVKDYQDLRKMGGSLINLPAL 337
Cdd:PRK12665  292 IAQSDIKRLLSFTLVSHIGYMVFGIALSTVAglsGAIYYVAHHITVQTTLFLVVG-LIERQAGSSSLRRLGGLAKASPLL 370
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1829764509 338 ATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGPSLV-VFVVSMIATGLTVVY 390
Cdd:PRK12665  371 AVLFFVPALNLGGIPPFSGFIGKVALLEAGAEDGTWLAwALVAGGVVTSLLTLY 424
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
12-390 3.44e-11

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 65.61  E-value: 3.44e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  12 ALLLLAILSGGVGFIFmsggeLALEWEAFSAFGQkmtlLLLFDFISLIFLSTVCLISGCVFFYSVSYMGGDMfNPRFAAL 91
Cdd:PRK05777   39 TLAVLALLLALVALLF-----VLGAAGGGTAFGG----MLVVDGFALFLKGLILLASLLALLLARPYLEDRG-RGEFYLL 108
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  92 VFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCY-YMSEKSFNASMLTALTNRIGDVAILLCISLWVSC-------G 163
Cdd:PRK05777  109 VLFALLGMMVMVSANDLLTLFLGLELLSLPLYALAALrRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGAtgslsfaG 188
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 164 IFNYGLVSSASVNVLSSALTLVIIAAMTKSAQIPFSAWLPAAM-AAPTPVSALVHSSTLVtAGVYFLVRMNYLILLSGWS 242
Cdd:PRK05777  189 IAKALADGSGNSLLLLFGLVFLLVGLAFKLSAVPFHMWTPDVYeGAPTPVTAFLATAPKI-AAFAVLLRLLVVAFGGLSE 267
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 243 SW---LLALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPFM---AFFHLISHAYFKAMLFMAAGSIIH 316
Cdd:PRK05777  268 DWqqvLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGysaVLFYLLAYLFMTLGAFGVISLLRR 347
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1829764509 317 TVKDYQDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGPSLVVfVVSMIATGLTVVY 390
Cdd:PRK05777  348 KGGEAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLA-VIGVLNSAIGAFY 420
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
120-394 4.51e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 65.14  E-value: 4.51e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 120 VTSYLLVCYYMSEKSFNASMLTALTNRIGDVAILLCIS-LWVSCGIFNYG-----LVSSASVNVLSSALTLVIIAAMTKS 193
Cdd:PRK12662  144 ISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGfLYAITGTLNMGdmfliIQDLPTNRAIQIGVLFIMVGLFIKA 223
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 194 AQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRM-------NYLILLSGWSSWLLALGLFTMTMAGAAAIFELDM 266
Cdd:PRK12662  224 ALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIvydvfkaNFVFTTLPFNNVFMILAALAIVFGSVLAILSKDI 303
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 267 KKVIALSTLSQLGVMFFSLGMGQP---FMAFFHLISHAYFKAMLFMAAGSIIHTVkDYQDLRKMGGSLINLPALATVCLV 343
Cdd:PRK12662  304 KRIFAYSSISHIGYIILAVSLNTYyglAAAVAYIVNHSIVKSALFMVSGSISYHF-GTTKLEDCLNLWKSMPKITLAFVL 382
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1829764509 344 SNLSLCGMPFLSGFYSKDLILESlFVQGPSLVVFVVSMIATGLTVVYSCRL 394
Cdd:PRK12662  383 LSLSLIGMPPTSGFVAKWYILDA-FIKSNAWIGLVVLLVGSGLSVIYVWKI 432
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
182-390 4.86e-11

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 65.11  E-value: 4.86e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 182 LTLVIIAAMTKSAQIPFSAWLP-AAMAAPTPVSALVhSSTLVTAGVYFLVRMNYLILLSGW---SSWLLALGLFTMTMAG 257
Cdd:PRK06473  208 LAPILVGFGIKIPLVPFHTWLPdAHVEASTPVSVLL-AGVLLKLGTYGLLRFGVGLFPEAWvylAPWLATWAVVSVLYGA 286
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 258 AAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPFM---AFFHLISHAYFKAMLFMAAGSIIHTV--KDYQDLRKMGGSLI 332
Cdd:PRK06473  287 SCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSilaAVFQMISHGLISALLFLLVGVVYKKTgsRDVDVLRGLLNPER 366
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1829764509 333 NLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGPslVVFVVSMIATGLTVVY 390
Cdd:PRK06473  367 GLPITGSLMILGVMASAGIPGMVGFIAEFLVFRGSFPIFP--VQTLLCMIGTGLTAVY 422
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
184-391 6.26e-10

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 61.50  E-value: 6.26e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 184 LVIIAAMTKSAQIPFSaWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILL---SGWSSWLLALGLFTMTMAGAAA 260
Cdd:PRK12663  212 LFLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLFPqerELLHPLLATMAAITMVIGALGA 290
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 261 IFELDMKKVIALSTLSQLGVMFFSLGMGQPFM---AFFHLISHAYFKAMLFMAAGSIIHtVKDYQDLRKMGGSLINLPAL 337
Cdd:PRK12663  291 LAYKDIRRIAGYQVISSIGFILLGLALGTPAGingAIFYLVHDMVVKTALFLIAGSLVR-LTGYRSLQYLGGLYRKEPLF 369
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1829764509 338 ATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGPslVVFVVSMIATGLTVVYS 391
Cdd:PRK12663  370 GALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGA--YILLALMLITSLITMYS 421
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
196-394 4.41e-09

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 59.06  E-value: 4.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 196 IPFSAWLPAAMA-APTPVSALvHSSTLVTAGVYFLVRMNY--LILLSGW-SSWLLALGLFTMTMAGAAAIFELDMKKVIA 271
Cdd:PRK05846  228 FPLHTWLPDAHVqAPTAGSVL-LAGILLKMGAYGLLRFSLplFPDASHEfAPIIITLGVIAIIYGALVALAQTDIKKLIA 306
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 272 LSTLSQLGVM---FFSLGMGQPFMAFFHLISHAYFKAMLFMAAGSII---HTvkdyQDLRKMGGSLINLPALATVCLVSN 345
Cdd:PRK05846  307 YSSISHMGFVtlgIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYdrlHT----RDIADYGGLAKVMPVLAAFFLFFA 382
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1829764509 346 LSLCGMPFLSGFYSKDLILESLFVQGPSLVVF-VVSMIatgLTVVYSCRL 394
Cdd:PRK05846  383 MASLGLPGTSGFVGEFLILLGSFQVNPVIAFIaTTGLI---LAAVYSLWL 429
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
49-391 1.93e-08

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 56.85  E-value: 1.93e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  49 LLLLFDFISLIFLSTVCLISGC---VFFYSVSYMGGDMFnprFAALVFMFILSMALMILSPNLISLLlgWDGLGVTSYLL 125
Cdd:MTH00226   96 LVFAVDGISIYFIILTGFIVPCsilISWHSVKYLTKSFL---ICMLILEFLLYAVFSVLDIFMFYIL--FEGVLIPMYLI 170
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 126 VCYYMS-EKSFNASMLTALTNRIGDVAILLCI-SLWVSCGIFNY-GLVSSASV--NVLSSALTLVIIAAMTKSAQI-PFS 199
Cdd:MTH00226  171 LGIWGSrEEKMQAAYYFFFYTLIGSVLMLLCLfSLYNIHGTTDYlTLASCSHVvsEQTQKWIFLGIFLAMAVKIPIfPFH 250
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 200 AWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILLSGWSSW---LLALGLFTMTMAGAAAIFELDMKKVIALSTLS 276
Cdd:MTH00226  251 IWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGAQNLapaVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVA 330
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 277 QLGVMFFSLGMGQPF---MAFFHLISHAYFKAMLFMAAgSIIHTVKDYQDLRKMGGSLINLPALATVCLVSNLSLCGMPF 353
Cdd:MTH00226  331 HMGLVSITLVTHDIIgltGSIFIMLAHGIVSSLLFILV-TILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPP 409
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1829764509 354 LSGFYSKDLILESLFVQGPSLVVFVVSMIAtgLTVVYS 391
Cdd:MTH00226  410 SGNFIGEYLSILSSFNWNPIIGVFVCSGVI--LSAVYS 445
PRK12666 PRK12666
putative monovalent cation/H+ antiporter subunit D; Reviewed
169-386 2.26e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237166 [Multi-domain]  Cd Length: 528  Bit Score: 56.78  E-value: 2.26e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 169 LVSSASVNVLSSALTLVIIAAMTKSAQIPFSAWLPAA-MAAPTPVSALVHSSTLVtaGVYFLVRMNYLILLSGW------ 241
Cdd:PRK12666  200 QLPAADRALLEAGAALLLVVFLIKAAMWPLNFWLPPAyAAASAPVAALFAIMTKV--GIYAILRLSTLLFGPEAgasagf 277
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 242 -SSWLLALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPFM---AFFHLISHAYFKAMLFMAAGSI--- 314
Cdd:PRK12666  278 gQDWLLPGGLATLAFGAIGVLAAQRLRRLAAYLVLVSSGTLLAAIGLGNPAAtaaALYYLVHSTLAAAALFLLADLVerq 357
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 315 -------------IHTVKDYQDLRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFV--QGPSLVVFVV 379
Cdd:PRK12666  358 rgaaadrlavtpeLYDLDEEEEEEVGVAIPATMALLGLLFFICALALAGLPPLSGFLGKFALLQALLNppGAGAAWWLWA 437

                  ....*..
gi 1829764509 380 SMIATGL 386
Cdd:PRK12666  438 LVLLSGL 444
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
390-529 4.78e-08

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 52.94  E-value: 4.78e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 390 YSCRLTLGIFNLFSGRESYSAEGDSDFFMLGGMSILMGPAIMGGWWLSGLM-PSSLIIFMPLWQKLTVLILVLVSGALAL 468
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIfPKPPMMTMPLYLKLLALLVTILGLLLGL 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1829764509 469 SGVGVS-----ERPNNIPSKFFHQMWFMPITFSIGLTNGGLSYGKSNSLNVDETWLTFSTWQGIFK 529
Cdd:pfam06455  81 ELSNLSnkqlkKSLNFNLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAK 146
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
49-378 2.83e-07

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 53.26  E-value: 2.83e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  49 LLLLFDFISL-IFLSTVCLISGCVF-FYSVSYMGGDMFNPRFAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLV 126
Cdd:PRK06459   33 ILLITSIYEYnGVLSFFSIISTIVWiLASLYSIEYDHYGKWLSSLYILTILGMAIVLTSDNYLLFLAGWEIMTIPSYVAI 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 127 CYYMSEKSFNASMLTaltnrIGDVAILLCISLWvscgIFNYGLVSSASVNVLSSALTLVIIA--AMTKSAQIPF--SAWL 202
Cdd:PRK06459  113 ALTKKNKRPAFVFMA-----FGELSTVLILAGF----AWAFIISGTTNFSYLPSPVPLILASfgFIIKMGMMPFlvSEWL 183
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 203 PAAMA-APTPVSAlVHSSTLVTAGVYFLVRMNYL---ILLSGWSSWLLALGLFTMTMAGAAAIFELDMKKVIALSTLSQL 278
Cdd:PRK06459  184 PIAHGnAPSNFSA-ILSATMTLMGVYGILKMTILtqtIPIGYFGLTILAIGAFSILFGALYAYVSENVKGLLAFSTIENN 262
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 279 GVMFFSLGMGQP-------------FMAFFHLISHAYFKAMLFMAAGSIIHTVKDYQDLRKMGGSLINLpalatvcLVSN 345
Cdd:PRK06459  263 GAILVALGLYMVtkqlitsiehfslITVILYSFAHSVAKTGLFLSSGLQEKQSITYSKKIRNRWIELGL-------TLLA 335
                         330       340       350
                  ....*....|....*....|....*....|...
gi 1829764509 346 LSLCGMPFLSGFYSKDLILESLFVQGPSLVVFV 378
Cdd:PRK06459  336 SSLSGLLPNIGGVASWLLLESLFMFAYVLHNVI 368
ndhB CHL00049
NADH dehydrogenase subunit 2
167-360 3.06e-06

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 50.00  E-value: 3.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 167 YGLVSSASVNVLSSALTLVIIAAMT--KSAQIPFSAWLPAAM-AAPTPVSALVhSSTLVTAGVYFLVRMNYLI---LLSG 240
Cdd:CHL00049  200 NGLINTQMYNSPGISIALIFITVGIgfKLSLAPFHQWTPDVYeGSPTPVVAFL-SVTSKVAASALATRIFDIPfyfSSNE 278
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 241 WSSWLLALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPFMAFFHLISHAYFkaMLFMAAGS----IIH 316
Cdd:CHL00049  279 WHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLF--YIFMNLGTfaciVLF 356
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1829764509 317 TVKDYQD-LRKMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSK 360
Cdd:CHL00049  357 GLRTGTDnIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK12664 PRK12664
putative monovalent cation/H+ antiporter subunit D; Reviewed
91-377 1.58e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237164 [Multi-domain]  Cd Length: 527  Bit Score: 47.80  E-value: 1.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  91 LVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSEKSFNASMLTALTNRIGDVAILLCISLWVSCGIFNyglv 170
Cdd:PRK12664   68 CYLLYYISSIAAISSSSLTLVVIGFEFMALSALMIIAAGCPGGNIGAFIHYACVHFFSGVLLLVGASGQAQNGQYT---- 143
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 171 ssasvnvlSSALTLVIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSstLVTAGVYFLVrmnyLILLSGWSSWLLALGL 250
Cdd:PRK12664  144 --------GYCKLLFMLGLLINCACFPASSWVVDAYPAASNFGIIVLS--LFTTKVAALV----LLLFFSGEEILLFLGI 209
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 251 FTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGQPF-----MAFFHLISHAYFKAMLFMAAGSIIHTVKDYqDLR 325
Cdd:PRK12664  210 ITAIYGIIFASLEQNIRRLLCYNVVGQMGLLIIAIGFSGSSgvaigILILQIVLSVVYQTLLFMVADSVINRTRKF-NLN 288
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1829764509 326 KMGGsLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGPSLVVF 377
Cdd:PRK12664  289 RVGG-LFKMSLEAMCCIIAILNMGAFPGTAGFVSKSLITHSIDTAGLTLVLY 339
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
186-359 3.29e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 46.62  E-value: 3.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 186 IIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILLSG---WSSWLLALGLFTMTMAGAAAIF 262
Cdd:PRK02546  220 LIAYGVKLPIVPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALLRMNAGMLPDAhaqFAPLLIVLGVVNIIYAALTSFA 299
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 263 ELDMKKVIALSTLSQLGVM------FFSLGMGQpfmAFFHLISHAYFKAMLFMAAGSI---IHTVKdyqdLRKMGGSLIN 333
Cdd:PRK02546  300 QRNLKRKIAYSSISHMGFVligigsFTDLGTSG---AMLQMISHGLIGASLFFLVGATydrTHTLM----LDEMGGVGQK 372
                         170       180
                  ....*....|....*....|....*....
gi 1829764509 334 LP---ALATVCLVSNLSLCGMpflSGFYS 359
Cdd:PRK02546  373 MRkmfAMWTACSLASLALPGM---SGFVA 398
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
86-359 9.74e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 45.02  E-value: 9.74e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  86 PR-FAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSEKSFNASMLTALTNRIGDVAILLC-ISLWVSCG 163
Cdd:PRK12561   86 PRlFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAgLALALSGD 165
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 164 IFNYGLVSSASVNVlSSALTLV-----IIAAMTKSAQIPFSAWLPAAMA-APTPVSALVhSSTLVTAGVYFLVRMNYLIL 237
Cdd:PRK12561  166 TFTFDLAELGAKSY-PLALELLlyagfLIAFGVKLPIFPLHTWLPDAHGeASAPVSMIL-AGVLLKMGGYALIRFNVQML 243
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 238 LSG---WSSWLLALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVM------FFSLGMGQpfmAFFHLISHAYFKAMLF 308
Cdd:PRK12561  244 PDAhvyFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVllgiaaFTDLGISG---AMLQMISHGLIAAALF 320
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1829764509 309 MAAGSI---IHTVKdyqdLRKMGGSLINLP---ALATVCLVSNLSLCGMpflSGFYS 359
Cdd:PRK12561  321 FLTGVTyerTHTLS----IPNMGGLAKVMPktfALFTASSMASLALPGM---SGFVS 370
ndhD CHL00011
NADH dehydrogenase subunit 4
187-363 1.84e-04

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 44.17  E-value: 1.84e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 187 IAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILL---SGWSSWLLALGLFTMTMAGAAAIFE 263
Cdd:CHL00011  219 IAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPhahSIFSPWLVIVGAIQIIYAASTSLGQ 298
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 264 LDMKKVIALSTLSQLGvmFFSLGMGQ-----PFMAFFHLISHAYFKAMLFMAAGSI---IHTVKdyqdLRKMGGSLINLP 335
Cdd:CHL00011  299 RNLKKRIAYSSVSHMG--FIIIGIGSitdtgLNGAILQIISHGFIGAALFFLAGTSydrIRLVY----LDEMGGIAIPMP 372
                         170       180       190
                  ....*....|....*....|....*....|.
gi 1829764509 336 ---ALATVCLVSNLSLCGMpflSGFYSKDLI 363
Cdd:CHL00011  373 kifTMFSSFSMASLALPGM---SGFVAELIV 400
Proton_antipo_N pfam00662
NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an ...
51-88 6.76e-04

NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an amino terminal extension of pfam00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.


Pssm-ID: 459895 [Multi-domain]  Cd Length: 51  Bit Score: 37.79  E-value: 6.76e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1829764509  51 LLFDFISLIFLSTVCLISGCVFFYSVSYMGGDMFNPRF 88
Cdd:pfam00662  13 FLIDPLSALMLLVVTGVSLLVHIYSIGYMHHDPGYARF 50
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
94-394 1.50e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 41.17  E-value: 1.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  94 MFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYM-SEKSFNASM----LTALTNR--IGDVAILLCISLWVSCGIFN 166
Cdd:MTH00196    1 MVALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRgSGYSAEAGLkyfvLGALSSGlfLFGCALLCGTTGGLHLSYIN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 167 YGLVSSASVNVLSSALT--LVIIAAMTKSAQIPFSAWLPAAM-AAPTPVSALVhsSTLVTAGVYFLvrmnyLILLSGWSS 243
Cdd:MTH00196   81 LVLNSGQSFSSVSVPIGylLIIVALLFKLSVAPFHMWAPDVYeGAPTKTTALL--AIVPKLGIFSI-----LVSIGLNVN 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 244 WLLALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGVMFFSLGMGqpfmAFFHL-ISHAYFKAMLFMA--AGSIIHTVKD 320
Cdd:MTH00196  154 ILLIGGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIG----SFESIqASLVYLFIYIIMSicVFSIILALNV 229
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1829764509 321 YQDLR-KMGGSLINLPALATVCLVSNLSLCGMPFLSGFYSKDLILESLFVQGpSLVVFVVSMIATGLTVVYSCRL 394
Cdd:MTH00196  230 YKNLIiEFSGLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQ-YYLIFLLAVFCSVIAGVYYVRI 303
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
88-360 3.39e-03

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 40.03  E-value: 3.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509  88 FAALVFMFILSMALMILSPNLISLLLGWDGLGVTSYLLVCYYMSEKSFNASMLTALTNRIGDVAILLC-ISLW--VSCGI 164
Cdd:PRK02504  112 FAAILLTATLGGMFLSGATELVMIFISLETLSIASYLLTGYMKRDPRSNEAALKYLLIGAASSAIFLYgSSLLygLSGGS 191
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 165 FNYGLVSSASVN----VLSSALTLVIIAAMTKSAQIPFSAWLPAAM-AAPTPVSALVhSSTLVTAGVYFLVRM---NYLI 236
Cdd:PRK02504  192 TQLSAIALALITspslGLALALVFVIAGIAFKISAVPFHQWTPDVYeGSPTPVVAFL-SVGSKAAGFALAIRLlvtAFPS 270
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 237 LLSGWSSWLLALGLFTMTMAGAAAIFELDMKKVIALSTLSQLGvmFFSLGM------GQPFMAFfhlishaYFKAMLFMA 310
Cdd:PRK02504  271 FDEQWKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG--FVMIGLvagteaGYASMVF-------YLLAYLFMN 341
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1829764509 311 AGS----IIHTVKDYQDLRKMGGSLINLPALATVCL-VSNLSLCGMPFLSGFYSK 360
Cdd:PRK02504  342 LGAfacvILFSLRTGTDQISDYAGLYQKDPLLTLGLsLCLLSLGGIPPLAGFFGK 396
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
182-395 9.72e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 38.36  E-value: 9.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 182 LTLVIIAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYFLVRMNYLILlsgwSSWLLALGLFTMTMAGAAAI 261
Cdd:MTH00070   95 TIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLN----SNLLIIMGLLSTLIGGWGGL 170
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764509 262 FELDMKKVIALSTLSQLGVMFFSLGMgQPFMAFFHLISHAYFKAMLFMAAGSIIHTvkdyqDLRKMGGSLINLPALATVC 341
Cdd:MTH00070  171 NQTQLRKIMAYSSIAHLGWMIIILTF-SPHLTLLNLLIYLIMTSSMFLMLMNLNST-----NINKLSSSWSKNPTLTSMM 244
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1829764509 342 LVSNLSLCGMPFLSGFYSKDLILESLFVQGPSLVVFVVsMIATGLTVVYSCRLT 395
Cdd:MTH00070  245 MLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLM-ALSALLSLFFYLRLS 297
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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