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Conserved domains on  [gi|1829764505|ref|YP_009743043|]
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cytochrome b (mitochondrion) [Eurytemora affinis]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 11-364 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 648.00  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  11 LRIVSGSLIELPTPTNISAMWNFGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLRMFHANGASFF 90
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  91 FICLYLHIGRGLYYGSYYFSHTWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEELVKWMWGGFAV 170
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 171 GNPTLTRFFSLHFLIPFVVAALSAVHLLFLHQTGSGNPLGVNSNFDKLSFHPYFSTKDLFGFFVMMFGLAYISLFFPWLL 250
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 251 GDPENFIPANPLVTPVHIQPEWYFLMAYAILRSIPNKLGGVIALALSIAILMICPFLPKPKFRGLTFYPLSKFVFWAHIN 330
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....
gi 1829764505 331 VVMLLTWIGARPVEDPYILVGQVLSVVYFSYYFL 364
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFII 354
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 11-364 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 648.00  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  11 LRIVSGSLIELPTPTNISAMWNFGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLRMFHANGASFF 90
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  91 FICLYLHIGRGLYYGSYYFSHTWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEELVKWMWGGFAV 170
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 171 GNPTLTRFFSLHFLIPFVVAALSAVHLLFLHQTGSGNPLGVNSNFDKLSFHPYFSTKDLFGFFVMMFGLAYISLFFPWLL 250
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 251 GDPENFIPANPLVTPVHIQPEWYFLMAYAILRSIPNKLGGVIALALSIAILMICPFLPKPKFRGLTFYPLSKFVFWAHIN 330
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....
gi 1829764505 331 VVMLLTWIGARPVEDPYILVGQVLSVVYFSYYFL 364
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFII 354
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
18-364 5.40e-120

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 352.56  E-value: 5.40e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  18 LIELPTPTNISAMWNFGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLRMFHANGASFFFICLYLH 97
Cdd:COG1290    27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  98 IGRGLYYGSYYFSH--TWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEELVKWMWGGFAVGNPTL 175
Cdd:COG1290   107 MFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATL 186

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 176 TRFFSLH-FLIPFVVAALSAVHLLFLHQTGSGNPLGV----NSNFDKLSFHPYFSTKDLFGFFVMMFGLAYISLFFPwlL 250
Cdd:COG1290   187 NRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP--I 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 251 GDPENFIPANPLVTPVHIQPEWYFLMAYAILRSIP--NKLGGVIALALSIAILMICPFLPKPKFRGLTFYPLSKFVFWAH 328
Cdd:COG1290   265 NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAF 344

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1829764505 329 INVVMLLTWIGARPveDPYILVGQVLSVVYFSYYFL 364
Cdd:COG1290   345 IVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-205 5.98e-82

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 248.82  E-value: 5.98e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505   9 PVLRIVSGSLIELPTPTNISAMWNFGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLRMFHANGAS 88
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  89 FFFICLYLHIGRGLYYGSYYFSH--TWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEELVKWMWG 166
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1829764505 167 GFAVGNPTLTRFFSLHFLIPFVVAALSAVHLLFLHQTGS 205
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGS 199
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 4.97e-73

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 225.34  E-value: 4.97e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  18 LIELPTPTNISAMWNFGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLRMFHANGASFFFICLYLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  98 IGRGLYYGSYYFSH--TWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEELVKWMWGGFAVGNPTL 175
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1829764505 176 TRFFSLHFLIPFVVAALSAVHLLFLHQTG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 229-325 5.95e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 57.50  E-value: 5.95e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 229 LFGFFVMMFGLAYISlffPWLLGDPenfipANPLVTPVHIQPEWYFLMAYAILRSIPNKLGGVIALALSIAILMICPFLP 308
Cdd:TIGR01156  44 ILGTIACVVGLAVLD---PAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115

                          90
                  ....*....|....*...
gi 1829764505 309 K-PKFRGLTFYPLSKFVF 325
Cdd:TIGR01156 116 NvNKFQNPFRRPVATTVF 133
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 11-364 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 648.00  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  11 LRIVSGSLIELPTPTNISAMWNFGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLRMFHANGASFF 90
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  91 FICLYLHIGRGLYYGSYYFSHTWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEELVKWMWGGFAV 170
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 171 GNPTLTRFFSLHFLIPFVVAALSAVHLLFLHQTGSGNPLGVNSNFDKLSFHPYFSTKDLFGFFVMMFGLAYISLFFPWLL 250
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 251 GDPENFIPANPLVTPVHIQPEWYFLMAYAILRSIPNKLGGVIALALSIAILMICPFLPKPKFRGLTFYPLSKFVFWAHIN 330
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....
gi 1829764505 331 VVMLLTWIGARPVEDPYILVGQVLSVVYFSYYFL 364
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFII 354
CYTB MTH00119
cytochrome b; Provisional
 6-364 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 593.42  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505   6 KTHPVLRIVSGSLIELPTPTNISAMWNFGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLRMFHAN 85
Cdd:MTH00119    7 KSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHAN 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  86 GASFFFICLYLHIGRGLYYGSYYFSHTWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEELVKWMW 165
Cdd:MTH00119   87 GASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 166 GGFAVGNPTLTRFFSLHFLIPFVVAALSAVHLLFLHQTGSGNPLGVNSNFDKLSFHPYFSTKDLFGFFVMMFGLAYISLF 245
Cdd:MTH00119  167 GGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALF 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 246 FPWLLGDPENFIPANPLVTPVHIQPEWYFLMAYAILRSIPNKLGGVIALALSIAILMICPFLPKPKFRGLTFYPLSKFVF 325
Cdd:MTH00119  247 SPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLF 326

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1829764505 326 WAHINVVMLLTWIGARPVEDPYILVGQVLSVVYFSYYFL 364
Cdd:MTH00119  327 WTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLI 365
CYTB MTH00145
cytochrome b; Provisional
 1-376 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 593.04  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505   1 MISFLKTHPVLRIVSGSLIELPTPTNISAMWNFGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLR 80
Cdd:MTH00145    2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  81 MFHANGASFFFICLYLHIGRGLYYGSYYFSHTWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEEL 160
Cdd:MTH00145   82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKML 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 161 VKWMWGGFAVGNPTLTRFFSLHFLIPFVVAALSAVHLLFLHQTGSGNPLGVNSNFDKLSFHPYFSTKDLFGFFVMMFGLA 240
Cdd:MTH00145  162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLV 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 241 YISLFFPWLLGDPENFIPANPLVTPVHIQPEWYFLMAYAILRSIPNKLGGVIALALSIAILMICPFLPKPKFRGLTFYPL 320
Cdd:MTH00145  242 FLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPL 321

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1829764505 321 SKFVFWAHINVVMLLTWIGARPVEDPYILVGQVLSVVYFSYYFLQVGLMKVWDSLL 376
Cdd:MTH00145  322 NQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNIL 377
CYTB MTH00191
cytochrome b; Provisional
 4-364 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 590.35  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505   4 FLKTHPVLRIVSGSLIELPTPTNISAMWNFGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLRMFH 83
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  84 ANGASFFFICLYLHIGRGLYYGSYYFSHTWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEELVKW 163
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 164 MWGGFAVGNPTLTRFFSLHFLIPFVVAALSAVHLLFLHQTGSGNPLGVNSNFDKLSFHPYFSTKDLFGFFVMMFGLAYIS 243
Cdd:MTH00191  161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 244 LFFPWLLGDPENFIPANPLVTPVHIQPEWYFLMAYAILRSIPNKLGGVIALALSIAILMICPFLPKPKFRGLTFYPLSKF 323
Cdd:MTH00191  241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1829764505 324 VFWAHINVVMLLTWIGARPVEDPYILVGQVLSVVYFSYYFL 364
Cdd:MTH00191  321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00131
cytochrome b; Provisional
 1-360 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 588.93  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505   1 MISFLKTHPVLRIVSGSLIELPTPTNISAMWNFGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLR 80
Cdd:MTH00131    1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  81 MFHANGASFFFICLYLHIGRGLYYGSYYFSHTWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEEL 160
Cdd:MTH00131   81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 161 VKWMWGGFAVGNPTLTRFFSLHFLIPFVVAALSAVHLLFLHQTGSGNPLGVNSNFDKLSFHPYFSTKDLFGFFVMMFGLA 240
Cdd:MTH00131  161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 241 YISLFFPWLLGDPENFIPANPLVTPVHIQPEWYFLMAYAILRSIPNKLGGVIALALSIAILMICPFLPKPKFRGLTFYPL 320
Cdd:MTH00131  241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1829764505 321 SKFVFWAHINVVMLLTWIGARPVEDPYILVGQVLSVVYFS 360
Cdd:MTH00131  321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFS 360
CYTB MTH00016
cytochrome b; Validated
 1-377 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 578.55  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505   1 MISFLKTHPVLRIVSGSLIELPTPTNISAMWNFGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLR 80
Cdd:MTH00016    2 FSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  81 MFHANGASFFFICLYLHIGRGLYYGSYYFSHTWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEEL 160
Cdd:MTH00016   82 NLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKML 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 161 VKWMWGGFAVGNPTLTRFFSLHFLIPFVVAALSAVHLLFLHQTGSGNPLGVNSNFDKLSFHPYFSTKDLFGFFVMMFGLA 240
Cdd:MTH00016  162 VQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 241 YISLFFPWLLGDPENFIPANPLVTPVHIQPEWYFLMAYAILRSIPNKLGGVIALALSIAILMICPFLPKPKFRGLTFYPL 320
Cdd:MTH00016  242 SVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPL 321

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1829764505 321 SKFVFWAHINVVMLLTWIGARPVEDPYILVGQVLSVVYFSYYFLQVGLMKVWDSLLK 377
Cdd:MTH00016  322 NQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLLK 378
CYTB MTH00074
cytochrome b; Provisional
 6-376 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 577.79  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505   6 KTHPVLRIVSGSLIELPTPTNISAMWNFGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLRMFHAN 85
Cdd:MTH00074    7 KTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHAN 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  86 GASFFFICLYLHIGRGLYYGSYYFSHTWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEELVKWMW 165
Cdd:MTH00074   87 GASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 166 GGFAVGNPTLTRFFSLHFLIPFVVAALSAVHLLFLHQTGSGNPLGVNSNFDKLSFHPYFSTKDLFGFFVMMFGLAYISLF 245
Cdd:MTH00074  167 GGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLF 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 246 FPWLLGDPENFIPANPLVTPVHIQPEWYFLMAYAILRSIPNKLGGVIALALSIAILMICPFLPKPKFRGLTFYPLSKFVF 325
Cdd:MTH00074  247 SPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILF 326

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1829764505 326 WAHINVVMLLTWIGARPVEDPYILVGQVLSVVYFSYYFLQVGLMKVWDSLL 376
Cdd:MTH00074  327 WLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKL 377
CYTB MTH00100
cytochrome b; Provisional
 1-360 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 570.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505   1 MISFLKTHPVLRIVSGSLIELPTPTNISAMWNFGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLR 80
Cdd:MTH00100    1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  81 MFHANGASFFFICLYLHIGRGLYYGSYYFSHTWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEEL 160
Cdd:MTH00100   81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 161 VKWMWGGFAVGNPTLTRFFSLHFLIPFVVAALSAVHLLFLHQTGSGNPLGVNSNFDKLSFHPYFSTKDLFGFFVMMFGLA 240
Cdd:MTH00100  161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 241 YISLFFPWLLGDPENFIPANPLVTPVHIQPEWYFLMAYAILRSIPNKLGGVIALALSIAILMICPFLPKPKFRGLTFYPL 320
Cdd:MTH00100  241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1829764505 321 SKFVFWAHINVVMLLTWIGARPVEDPYILVGQVLSVVYFS 360
Cdd:MTH00100  321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFL 360
CYTB MTH00034
cytochrome b; Validated
 6-364 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 543.53  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505   6 KTHPVLRIVSGSLIELPTPTNISAMWNFGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLRMFHAN 85
Cdd:MTH00034    6 KSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHAN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  86 GASFFFICLYLHIGRGLYYGSYYFSHTWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEELVKWMW 165
Cdd:MTH00034   86 GASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIW 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 166 GGFAVGNPTLTRFFSLHFLIPFVVAALSAVHLLFLHQTGSGNPLGVNSNFDKLSFHPYFSTKDLFGFFVMMFGLAYISLF 245
Cdd:MTH00034  166 GGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 246 FPWLLGDPENFIPANPLVTPVHIQPEWYFLMAYAILRSIPNKLGGVIALALSIAILMICPFLPKPKFRGLTFYPLSKFVF 325
Cdd:MTH00034  246 FPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAF 325

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1829764505 326 WAHINVVMLLTWIGARPVEDPYILVGQVLSVVYFSYYFL 364
Cdd:MTH00034  326 WLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLF 364
CYTB MTH00022
cytochrome b; Validated
 6-369 9.07e-179

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 501.54  E-value: 9.07e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505   6 KTHPVLRIVSGSLIELPTPTNISAMWNFGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLRMFHAN 85
Cdd:MTH00022    5 KENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHAN 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  86 GASFFFICLYLHIGRGLYYGSYYFSHTWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEELVKWMW 165
Cdd:MTH00022   85 GASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 166 GGFAVGNPTLTRFFSLHFLIPFVVAALSAVHLLFLHQTGSGNPLGVNSNFDKLSFHPYFSTKDLFGFFVMMFGLAYISLF 245
Cdd:MTH00022  165 GGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYF 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 246 FPWLLGDPENFIPANPLVTPVHIQPEWYFLMAYAILRSIPNKLGGVIALALSIAILMICPFLPKPKFRGLTFYPLSKFVF 325
Cdd:MTH00022  245 APNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAF 324

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1829764505 326 WAHINVVMLLTWIGARPVEDPYILVGQVLSVVYFSYYFLQVGLM 369
Cdd:MTH00022  325 WFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLL 368
CYTB MTH00053
cytochrome b; Provisional
 3-376 4.20e-174

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 489.60  E-value: 4.20e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505   3 SFLKTHPVLRIVSGSLIELPTPTNISAMWNFGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLRMF 82
Cdd:MTH00053    4 TIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  83 HANGASFFFICLYLHIGRGLYYGSYYFSHTWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEELVK 162
Cdd:MTH00053   84 HANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVR 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 163 WMWGGFAVGNPTLTRFFSLHFLIPFVVAALSAVHLLFLHQTGSGNPLGVNSNFDKLSFHPYFSTKDLFGFFVMMFGLAYI 242
Cdd:MTH00053  164 WVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSII 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 243 SLFFPWLLGDPENFIPANPLVTPVHIQPEWYFLMAYAILRSIPNKLGGVIALALSIAILMICPFLPKPKFRGLTFYPLSK 322
Cdd:MTH00053  244 VFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSK 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1829764505 323 FVFWAHINVVMLLTWIGARPVEDPYILVGQVLSVVYFSYYFLQVGLMKVWDSLL 376
Cdd:MTH00053  324 ILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKL 377
CYTB MTH00224
cytochrome b; Provisional
 4-377 6.57e-174

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 489.05  E-value: 6.57e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505   4 FLKTHPVLRIVSGSLIELPTPTNISAMWNFGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLRMFH 83
Cdd:MTH00224    5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  84 ANGASFFFICLYLHIGRGLYYGSYYFSHTWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEELVKW 163
Cdd:MTH00224   85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 164 MWGGFAVGNPTLTRFFSLHFLIPFVVAALSAVHLLFLHQTGSGNPLGVNSNFDKLSFHPYFSTKDLFGFFVMMFGLAYIS 243
Cdd:MTH00224  165 IWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMV 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 244 LFFPWLLGDPENFIPANPLVTPVHIQPEWYFLMAYAILRSIPNKLGGVIALALSIAILMICPFLPKPKFRGLTFYPLSKF 323
Cdd:MTH00224  245 LFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQL 324

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1829764505 324 VFWAHINVVMLLTWIGARPVEDPYILVGQVLSVVYFSYYFLQVGLMKVWDSLLK 377
Cdd:MTH00224  325 LFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 18-376 2.17e-131

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 381.59  E-value: 2.17e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  18 LIELPTPTNISAMWNFGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLRMFHANGASFFFICLYLH 97
Cdd:MTH00033   15 IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCH 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  98 IGRGLYYGSYYFSHTWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEELVKWMWGGFAVGNPTLTR 177
Cdd:MTH00033   95 IGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNR 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 178 FFSLHFLIPFVVAALSAVHLLFLHQTGSGNPLGVNSNFDKLSFHPYFSTKDLFGFFVMMFGLAYISL--FFPWLLGDPEN 255
Cdd:MTH00033  175 FFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDPEN 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 256 FIPANPLVTPVHIQPEWYFLMAYAILRSIPNKLGGVIALALSIAILMICPFLPKPKFRGLTFYPLSKFVFWAHINVVMLL 335
Cdd:MTH00033  255 FIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIIL 334

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1829764505 336 TWIGARPV-EDPYILVGQVLSVVYFSYYFLQVGLMKVWDSLL 376
Cdd:MTH00033  335 TWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSNLF 376
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
18-364 5.40e-120

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 352.56  E-value: 5.40e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  18 LIELPTPTNISAMWNFGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLRMFHANGASFFFICLYLH 97
Cdd:COG1290    27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  98 IGRGLYYGSYYFSH--TWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEELVKWMWGGFAVGNPTL 175
Cdd:COG1290   107 MFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATL 186

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 176 TRFFSLH-FLIPFVVAALSAVHLLFLHQTGSGNPLGV----NSNFDKLSFHPYFSTKDLFGFFVMMFGLAYISLFFPwlL 250
Cdd:COG1290   187 NRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP--I 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 251 GDPENFIPANPLVTPVHIQPEWYFLMAYAILRSIP--NKLGGVIALALSIAILMICPFLPKPKFRGLTFYPLSKFVFWAH 328
Cdd:COG1290   265 NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAF 344

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1829764505 329 INVVMLLTWIGARPveDPYILVGQVLSVVYFSYYFL 364
Cdd:COG1290   345 IVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
CYTB MTH00086
cytochrome b; Provisional
 13-364 4.42e-119

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 348.85  E-value: 4.42e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  13 IVSGSLIELPTPTNISAMWNFGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLRMFHANGASFFFI 92
Cdd:MTH00086    2 FVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  93 CLYLHIGRGLYYGSYYFSHTWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEELVKWMWGGFAVGN 172
Cdd:MTH00086   82 FLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 173 PTLTRFFSLHFLIPFVVAALSAVHLLFLHQTGSGNPLGVNSNFDKLSFHPYFSTKDLFGFFVMMFgLAYISLFFPWLLGD 252
Cdd:MTH00086  162 ATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLGD 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 253 PENFIPANPLVTPVHIQPEWYFLMAYAILRSIPNKLGGVIALALSIAILMicpFLPKPKFRGLTFYPLSKFVFWAHINVV 332
Cdd:MTH00086  241 PEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFY---FFIFVNNYTSCLNKLNKFLVFSFIVVN 317

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1829764505 333 MLLTWIGARPVEDPYILVGQVLSVVYFSYYFL 364
Cdd:MTH00086  318 VILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
CYTB MTH00046
cytochrome b; Validated
 11-364 1.96e-82

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 255.29  E-value: 1.96e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  11 LRIVSGSLIELPTPTNISAMWNFGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLRMFHANGASFF 90
Cdd:MTH00046    2 ISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  91 FICLYLHIGRGLYYGSYYFSHTWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEELVKWMWGGFAV 170
Cdd:MTH00046   82 FILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSV 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 171 GNPTLTRFFSLHFLIPFVVAALSAVHLLFLHQTGSGNPLGVNSNF-DKLSFHPYFSTKDLFGFFVMMFGLAYISLFFPWL 249
Cdd:MTH00046  162 TGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 250 LGDPENFIPANPLVTPVHIQPEWYFLMAYAILRSIPNKLGGviaLALSIAILMicpFLPKPKFRGLTFYPLSK-FVFWAH 328
Cdd:MTH00046  242 VLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG---LVLVLSFLF---FLWVPTFNGSSVYSVWRqVNFWLI 315

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1829764505 329 INVVMLLTWIGARPVEDPYILVGQVLSVVYFSYYFL 364
Cdd:MTH00046  316 VSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-205 5.98e-82

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 248.82  E-value: 5.98e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505   9 PVLRIVSGSLIELPTPTNISAMWNFGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLRMFHANGAS 88
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  89 FFFICLYLHIGRGLYYGSYYFSH--TWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEELVKWMWG 166
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1829764505 167 GFAVGNPTLTRFFSLHFLIPFVVAALSAVHLLFLHQTGS 205
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGS 199
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 4.97e-73

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 225.34  E-value: 4.97e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  18 LIELPTPTNISAMWNFGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLRMFHANGASFFFICLYLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  98 IGRGLYYGSYYFSH--TWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEELVKWMWGGFAVGNPTL 175
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1829764505 176 TRFFSLHFLIPFVVAALSAVHLLFLHQTG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-353 3.18e-46

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 155.11  E-value: 3.18e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 207 NPLGVNSNFDKLSFHPYFSTKDLFGFFVMMFGLAYISLFFPWLLGDPENFIPANPLVTPVHIQPEWYFLMAYAILRSIPN 286
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1829764505 287 KLGGVIALALSIAILMICPFLPKPKFRGlTFYPLSKFVFWAHINVVMLLTWIGARPVEDPYILVGQV 353
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-253 4.81e-40

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 139.68  E-value: 4.81e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  88 SFFFICLYLHIGRGLYYGSYYFSH--TWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEELVKWMW 165
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 166 GGFAVGNPTLTRFFSLHFLI-PFVVAALSAVHLLFLHQTGSGNPLGVNSNFDKLSFHPYFSTKDLFGFFVMMFGLAYISL 244
Cdd:pfam13631  81 GGPFPGTATIPRFYALHILLlPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1829764505 245 FFPWLLGDP 253
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 33-209 1.87e-38

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 137.15  E-value: 1.87e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  33 FGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLRMFHANGASFFFICLYLHIGRGLYYGSYYFSH- 111
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 112 -TWVVGVLILFAVMAAAFLGYVLPWGQMSFWGATVITNLFSAIPYIGEELVKWMWGGFAVGNPTLTRFFSLH-FLIPFVV 189
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170       180
                  ....*....|....*....|
gi 1829764505 190 AALSAVHLLFLHQTGSGNPL 209
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGPL 223
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
258-358 6.41e-37

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 129.14  E-value: 6.41e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 258 PANPLVTPVHIQPEWYFLMAYAILRSIPNKLGGVIALALSIAILMICPFLPKPKFRGLTFYPLSKFVFWAHINVVMLLTW 337
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1829764505 338 IGARPVEDPYILVGQVLSVVY 358
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
petB CHL00070
cytochrome b6
 24-209 5.96e-31

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 117.13  E-value: 5.96e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505  24 PTNISAMWNFGSLLGLCLIVQILTGLFLAMHFCADVTLAFESVSHICRDVNYGWVLRMFHANGASFFFICLYLHIGRGLY 103
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 104 YGSYYFSH--TWVVGVLIlfAVMAAAF--LGYVLPWGQMSFWGATVITNLFSAIPYIGEELVKWMWGGFAVGNPTLTRFF 179
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVL--AVLTVSFgvTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFY 184

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1829764505 180 SLH-FLIPFVVAALSAVHLLFLHQTGSGNPL 209
Cdd:CHL00070  185 SLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 229-307 3.33e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 61.17  E-value: 3.33e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1829764505 229 LFGFFVMMFGLAYISlffPWLLGDPenfipANPLVTPVHIQPEWYFLMAYAILRSIPNKLGGVIALALSIAILMICPFL 307
Cdd:CHL00058   44 ILGTIACNVGLAVLE---PSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFL 114
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 231-349 1.72e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 59.04  E-value: 1.72e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 231 GFFVMMFGLAYISlffPWLLGDPenfipANPLVTPVHIQPEWYFLMAYAILRSIPNKLGGVIALALSIAILMICPFLPK- 309
Cdd:COG5679    47 GTIALCIGLAVLD---PAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENv 118

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1829764505 310 PKFRGLTFYPLSKFVFWAHINVVMLLTWIGARPVEDPYIL 349
Cdd:COG5679   119 NKFQNPFRRPVATAVFLFGTLVTLWLGIGAALPIDKSLTL 158
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 229-325 5.95e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 57.50  E-value: 5.95e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829764505 229 LFGFFVMMFGLAYISlffPWLLGDPenfipANPLVTPVHIQPEWYFLMAYAILRSIPNKLGGVIALALSIAILMICPFLP 308
Cdd:TIGR01156  44 ILGTIACVVGLAVLD---PAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115

                          90
                  ....*....|....*...
gi 1829764505 309 K-PKFRGLTFYPLSKFVF 325
Cdd:TIGR01156 116 NvNKFQNPFRRPVATTVF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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