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Conserved domains on  [gi|1828983604|gb|QIU98440|]
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porin [Klebsiella pneumoniae]

Protein Classification

carbohydrate porin( domain architecture ID 11246549)

carbohydrate porin belonging to the porin LamB (TC 1.B.3) family, whose members are thought to bind various sugars; carbohydrate porin forms aqueous channels for the diffusion of carbohydrate molecules across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Porin_8 pfam16966
Porin-like glycoporin RafY; This is a family of Gram-negative Gammaproteobacteria putative ...
 83-447 0e+00

Porin-like glycoporin RafY; This is a family of Gram-negative Gammaproteobacteria putative raffinose-like porins.


:

Pssm-ID: 435680  Cd Length: 366  Bit Score: 641.55  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828983604  83 FYGDVEFNLDGASRTGSLTSVKTSANKSWAPGDKERWDINGRILLGFDGRRNGADGQYAGFSVQPLADMDGKMNLDDAAF 162
Cdd:pfam16966   1 FYGDVEFNLDAASRSGGLTSAKTSANKGWAPGDNERWDINGRILLGFDGERRLANGNFAGFSVQPLADLNGKMNLDDAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828983604 163 FFGQQDDWKIKIGRFEAWDMFPLNQDTFIEYSGNTANDLYSDGYGYIYMMKEGRGRSSSGGNLLFSKTVDNWYFEVNTLV 242
Cdd:pfam16966  81 FFGVENDWKIKVGRFEAYDMFPLNQDTFIEYSGNTANDLYSDGYGYIYMMKEGRGRSDSGGNALLSKTAGNWYFEVNTLF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828983604 243 EDGSSLFVDQNYHGNALENRKNVVYVRPVAAWQSGAWSAAAAIESNLVNNAYGYQSQSGRWVDQSNRTGYGLTMSWNTLK 322
Cdd:pfam16966 161 EDGTSLYADDNYHGNALDNDKNVVYVRPVIAWQGGTWSVAAAMETNVVNNAYGYVDAAGEWVDQSDRTGYGLTMTWNGQK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828983604 323 SDPQDGAVVNLSTALLDAADETDFSAGINALWHRVELGYIYAHNKIDQFNMAGVTSECDGDCAILAPGRYDIHTLHTSWQ 402
Cdd:pfam16966 241 VDPEDGAVVNLNTAYLDADDETDFTVGPNALWHRFELGYIYAHNKIDAFNEDGVRASCYDDCWVSMPGNYDIHTVHASYL 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1828983604 403 LPNIMAMPNFNIYLGAYASWLDSTAAKSGNP-DERYGARVRFKYFF 447
Cdd:pfam16966 321 IPNVMGMDNFNIYLGAYASWLDAEGAADDNEgDARYGGRVRFKYFF 366
 
Name Accession Description Interval E-value
Porin_8 pfam16966
Porin-like glycoporin RafY; This is a family of Gram-negative Gammaproteobacteria putative ...
 83-447 0e+00

Porin-like glycoporin RafY; This is a family of Gram-negative Gammaproteobacteria putative raffinose-like porins.


Pssm-ID: 435680  Cd Length: 366  Bit Score: 641.55  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828983604  83 FYGDVEFNLDGASRTGSLTSVKTSANKSWAPGDKERWDINGRILLGFDGRRNGADGQYAGFSVQPLADMDGKMNLDDAAF 162
Cdd:pfam16966   1 FYGDVEFNLDAASRSGGLTSAKTSANKGWAPGDNERWDINGRILLGFDGERRLANGNFAGFSVQPLADLNGKMNLDDAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828983604 163 FFGQQDDWKIKIGRFEAWDMFPLNQDTFIEYSGNTANDLYSDGYGYIYMMKEGRGRSSSGGNLLFSKTVDNWYFEVNTLV 242
Cdd:pfam16966  81 FFGVENDWKIKVGRFEAYDMFPLNQDTFIEYSGNTANDLYSDGYGYIYMMKEGRGRSDSGGNALLSKTAGNWYFEVNTLF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828983604 243 EDGSSLFVDQNYHGNALENRKNVVYVRPVAAWQSGAWSAAAAIESNLVNNAYGYQSQSGRWVDQSNRTGYGLTMSWNTLK 322
Cdd:pfam16966 161 EDGTSLYADDNYHGNALDNDKNVVYVRPVIAWQGGTWSVAAAMETNVVNNAYGYVDAAGEWVDQSDRTGYGLTMTWNGQK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828983604 323 SDPQDGAVVNLSTALLDAADETDFSAGINALWHRVELGYIYAHNKIDQFNMAGVTSECDGDCAILAPGRYDIHTLHTSWQ 402
Cdd:pfam16966 241 VDPEDGAVVNLNTAYLDADDETDFTVGPNALWHRFELGYIYAHNKIDAFNEDGVRASCYDDCWVSMPGNYDIHTVHASYL 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1828983604 403 LPNIMAMPNFNIYLGAYASWLDSTAAKSGNP-DERYGARVRFKYFF 447
Cdd:pfam16966 321 IPNVMGMDNFNIYLGAYASWLDAEGAADDNEgDARYGGRVRFKYFF 366
 
Name Accession Description Interval E-value
Porin_8 pfam16966
Porin-like glycoporin RafY; This is a family of Gram-negative Gammaproteobacteria putative ...
 83-447 0e+00

Porin-like glycoporin RafY; This is a family of Gram-negative Gammaproteobacteria putative raffinose-like porins.


Pssm-ID: 435680  Cd Length: 366  Bit Score: 641.55  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828983604  83 FYGDVEFNLDGASRTGSLTSVKTSANKSWAPGDKERWDINGRILLGFDGRRNGADGQYAGFSVQPLADMDGKMNLDDAAF 162
Cdd:pfam16966   1 FYGDVEFNLDAASRSGGLTSAKTSANKGWAPGDNERWDINGRILLGFDGERRLANGNFAGFSVQPLADLNGKMNLDDAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828983604 163 FFGQQDDWKIKIGRFEAWDMFPLNQDTFIEYSGNTANDLYSDGYGYIYMMKEGRGRSSSGGNLLFSKTVDNWYFEVNTLV 242
Cdd:pfam16966  81 FFGVENDWKIKVGRFEAYDMFPLNQDTFIEYSGNTANDLYSDGYGYIYMMKEGRGRSDSGGNALLSKTAGNWYFEVNTLF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828983604 243 EDGSSLFVDQNYHGNALENRKNVVYVRPVAAWQSGAWSAAAAIESNLVNNAYGYQSQSGRWVDQSNRTGYGLTMSWNTLK 322
Cdd:pfam16966 161 EDGTSLYADDNYHGNALDNDKNVVYVRPVIAWQGGTWSVAAAMETNVVNNAYGYVDAAGEWVDQSDRTGYGLTMTWNGQK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828983604 323 SDPQDGAVVNLSTALLDAADETDFSAGINALWHRVELGYIYAHNKIDQFNMAGVTSECDGDCAILAPGRYDIHTLHTSWQ 402
Cdd:pfam16966 241 VDPEDGAVVNLNTAYLDADDETDFTVGPNALWHRFELGYIYAHNKIDAFNEDGVRASCYDDCWVSMPGNYDIHTVHASYL 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1828983604 403 LPNIMAMPNFNIYLGAYASWLDSTAAKSGNP-DERYGARVRFKYFF 447
Cdd:pfam16966 321 IPNVMGMDNFNIYLGAYASWLDAEGAADDNEgDARYGGRVRFKYFF 366
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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