|
Name |
Accession |
Description |
Interval |
E-value |
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
1-295 |
2.17e-73 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 227.32 E-value: 2.17e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 1 MSTIIPASPKARKKRRTePVYYFFLLPSVILFTLAITIPGLVGIFYSFTDSIGIG-DWKFIGLTNYKALFSDPAILQAYL 79
Cdd:COG1175 1 MTTTTSAAARRRRRRRR-LAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGpPPEFVGLDNYARLFTDPRFWNALG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 80 FTFGFAIVTVAVVNLVAFLLALGLTAKIRFTTTLRAIFVVPMVISGIIISYVFNFLFSNSLPALGEALGVSWLET-SLLA 158
Cdd:COG1175 80 NTLLFTVVSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGLEPiNWLG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 159 NPNLAWVAIVIVTAWQAIPSTMLIYIAGLLSVPGEVYEAAEIDGASTLQKLTRVTIPLVFGYVVINMILGLKNFLNAYDI 238
Cdd:COG1175 160 DPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDL 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1828970548 239 IVGLTNGGPGTATRSIAMTIIS-GFNGGDYAYQMANATIFFFVAIVIALLQLSATRGR 295
Cdd:COG1175 240 VYVLTGGGPGNSTTTLVLYIYQtAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRR 297
|
|
| PRK10561 |
PRK10561 |
sn-glycerol-3-phosphate ABC transporter permease UgpA; |
25-288 |
1.52e-17 |
|
sn-glycerol-3-phosphate ABC transporter permease UgpA;
Pssm-ID: 182550 [Multi-domain] Cd Length: 280 Bit Score: 80.64 E-value: 1.52e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 25 LLPSVILFTLAITIPGLVGIFYSF--TDSIGIGDwKFIGLTNYKALFSDPAILQAYLFTFGFAIVTVAVVNLVAFLLALG 102
Cdd:PRK10561 3 VAPQLIITVIFFIWPAGEALWYSLqsVDPFGFSS-QFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 103 LTAKIRFTTTLRAIFVVPMVISGIIISYVFNFLFSNSLPALGEALGVSWLETSLLANPNLAWVAIVIVTAWQAIPSTMLI 182
Cdd:PRK10561 82 VDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFLF 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 183 YIAGLLSVPGEVYEAAEIDGASTLQKLTRVTIPLV----FGYVVINMILGlknFLNAYDIIVGLTNGGPGTATRSIAMTI 258
Cdd:PRK10561 162 FFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIapvsFFLLVVNLVYA---FFDTFPVIDAATSGGPVQATTTLIYKI 238
|
250 260 270
....*....|....*....|....*....|.
gi 1828970548 259 I-SGFNGGDYAYQMANATIFFFVAIVIALLQ 288
Cdd:PRK10561 239 YrEGFTGLDLSSSAAQSVVLMFLVIVLTVVQ 269
|
|
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
30-215 |
1.31e-09 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 58.54 E-value: 1.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 30 ILFTLAITIPGLVGIFYSFTDSIGIGDWKFIGLTNYKALFSDPAILQAYLFTFGFAIVTVAVVNLVAFLLALGLT-AKIR 108
Cdd:TIGR03262 8 AGMILALLLFLLLPLLALLTKSVYDSDGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTrSRIP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 109 FTTTLRAIFVVPMVISGIIISYVFNFLFSNSlpalgealGVswLETSLLANPNLAWVAIVIVTAWQAIPSTMLIYIAGLL 188
Cdd:TIGR03262 88 GKGAFRLVALLPLLAPSLLPAISLIYLFGNQ--------GL--LKGLLGGFSIYGFWGIVIGEVFYTFPHALMILVTALS 157
|
170 180
....*....|....*....|....*..
gi 1828970548 189 SVPGEVYEAAEIDGASTLQKLTRVTIP 215
Cdd:TIGR03262 158 LADGRLYEAARAMGASPWRTFFTVTLP 184
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
134-287 |
2.97e-05 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 43.83 E-value: 2.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 134 FLFSNSLPALgeALGVSWLETSLLANPNLAWVAIVIVTAWQAIPSTMLIYIAGLLSVPGEVYEAAEIDGASTLQKLTRVT 213
Cdd:pfam00528 24 IDLLQALPSF--VLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKII 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1828970548 214 IPLVFGYVVINMILGLKNFLNAYDIIVGLTNGGPgtatrsIAMTIISGFNGGDYAYQMANATIFFFVAIVIALL 287
Cdd:pfam00528 102 LPNALPPILTGLALAFGGALGGAVLLEFLGSWPG------LGLLLIEAILGYDYPEIQGPVLAAALILLLLNLL 169
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
78-282 |
3.01e-05 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 43.81 E-value: 3.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 78 YLFTFGFAIVTVAVVNLVAFLLALGLTAKIR-----FTTTLRAIFVVPMVISGIIISYVFNFLFSNSLpalgealgvswl 152
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGkldrlLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGI------------ 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 153 etsllaNPNLAWVAIVIVTAWQAiPSTMLIYIAGLLSVPGEVYEAAEIDGASTLQKLTRVTIPLVFGYVVINMILGLKNF 232
Cdd:cd06261 69 ------LPGLGLPALILALLLIA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARA 141
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1828970548 233 LNAYDIIVGLTNGGPGTATrSIAMTIISGFNGGDYAYQMANATIFFFVAI 282
Cdd:cd06261 142 LGEFALVSFLGGGEAPGPG-TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
1-295 |
2.17e-73 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 227.32 E-value: 2.17e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 1 MSTIIPASPKARKKRRTePVYYFFLLPSVILFTLAITIPGLVGIFYSFTDSIGIG-DWKFIGLTNYKALFSDPAILQAYL 79
Cdd:COG1175 1 MTTTTSAAARRRRRRRR-LAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGpPPEFVGLDNYARLFTDPRFWNALG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 80 FTFGFAIVTVAVVNLVAFLLALGLTAKIRFTTTLRAIFVVPMVISGIIISYVFNFLFSNSLPALGEALGVSWLET-SLLA 158
Cdd:COG1175 80 NTLLFTVVSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGLEPiNWLG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 159 NPNLAWVAIVIVTAWQAIPSTMLIYIAGLLSVPGEVYEAAEIDGASTLQKLTRVTIPLVFGYVVINMILGLKNFLNAYDI 238
Cdd:COG1175 160 DPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDL 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1828970548 239 IVGLTNGGPGTATRSIAMTIIS-GFNGGDYAYQMANATIFFFVAIVIALLQLSATRGR 295
Cdd:COG1175 240 VYVLTGGGPGNSTTTLVLYIYQtAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRR 297
|
|
| LplB |
COG4209 |
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ... |
1-269 |
1.76e-24 |
|
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443357 [Multi-domain] Cd Length: 316 Bit Score: 100.16 E-value: 1.76e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 1 MSTIIPASPKARKKRRT--------EPVYYFFLLPSVILFTL--AITIPGLVGIFYSFTDSIGIGDWKFIGLTNYKALFS 70
Cdd:COG4209 1 MSTTAAKAKRKKKKRKKsflkrlkrDWQLYLMLLPGLIYLLIfsYLPMYGIVIAFKDYNPFKGIFGSPWVGLKNFKFLFS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 71 DPAILQAYLFTFGFAIVTVAVVNLVAFLLALGLT--AKIRFTTTLRAIFVVPMVISGIIISYVFNFLFSNSLPALGEALG 148
Cdd:COG4209 81 SPDFWRVLRNTLLISLLKLVFGFPLPIILALLLNelRSKRFKKTVQTISYLPHFLSWVVVAGIVYQFLSPDTGLVNQLLR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 149 VSWLET-SLLANPNLAWVAIVIVTAWQAIPSTMLIYIAGLLSVPGEVYEAAEIDGASTLQKLTRVTIPLVFGYVVINMIL 227
Cdd:COG4209 161 ALGGEPiNFLTEPKYFRPIYVFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPTIVILLIL 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1828970548 228 GLKNFLNA-YDIIVGLTNGgpgtATRSIAMTI-----ISGFNGGDYAY 269
Cdd:COG4209 241 NIGNILNVgFEQIYLLYNP----LNYSTSDVIdtyvyRIGLQNGDYSY 284
|
|
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
22-298 |
1.67e-18 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 83.27 E-value: 1.67e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 22 YFFLLPSVILFTLAITIPGLVGIFYSFTDSIGIGDWKF-IGLTNYKALFSDPAILQAYLFTFGFAIVTVAVVNLVAFLLA 100
Cdd:COG1176 12 LLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPgFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 101 LGLT-AKIRFTTTLRAIFVVPMVISGIIISYVFNFLFSNS--LPALGEALGVSWLETSLLANPnlawVAIVIVTAWQAIP 177
Cdd:COG1176 92 YFLArAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNglLNSLLLALGLIDEPLRLLYTE----FAVVIGLVYVYLP 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 178 STMLIYIAGLLSVPGEVYEAAEIDGASTLQKLTRVTIPLVFGYVVINMILGLKNFLNAYdIIVGLTnGGPGTATrsIAMT 257
Cdd:COG1176 168 FMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAF-VTPALL-GGGKVLM--IGNL 243
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1828970548 258 IIS-GFNGGDYAYQMANATIFFFVAIVIALLQLSATRGRNEL 298
Cdd:COG1176 244 IYQqFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLL 285
|
|
| PRK10561 |
PRK10561 |
sn-glycerol-3-phosphate ABC transporter permease UgpA; |
25-288 |
1.52e-17 |
|
sn-glycerol-3-phosphate ABC transporter permease UgpA;
Pssm-ID: 182550 [Multi-domain] Cd Length: 280 Bit Score: 80.64 E-value: 1.52e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 25 LLPSVILFTLAITIPGLVGIFYSF--TDSIGIGDwKFIGLTNYKALFSDPAILQAYLFTFGFAIVTVAVVNLVAFLLALG 102
Cdd:PRK10561 3 VAPQLIITVIFFIWPAGEALWYSLqsVDPFGFSS-QFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 103 LTAKIRFTTTLRAIFVVPMVISGIIISYVFNFLFSNSLPALGEALGVSWLETSLLANPNLAWVAIVIVTAWQAIPSTMLI 182
Cdd:PRK10561 82 VDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFLF 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 183 YIAGLLSVPGEVYEAAEIDGASTLQKLTRVTIPLV----FGYVVINMILGlknFLNAYDIIVGLTNGGPGTATRSIAMTI 258
Cdd:PRK10561 162 FFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIapvsFFLLVVNLVYA---FFDTFPVIDAATSGGPVQATTTLIYKI 238
|
250 260 270
....*....|....*....|....*....|.
gi 1828970548 259 I-SGFNGGDYAYQMANATIFFFVAIVIALLQ 288
Cdd:PRK10561 239 YrEGFTGLDLSSSAAQSVVLMFLVIVLTVVQ 269
|
|
| malF |
PRK10999 |
maltose ABC transporter permease MalF; |
59-293 |
4.37e-16 |
|
maltose ABC transporter permease MalF;
Pssm-ID: 236816 [Multi-domain] Cd Length: 520 Bit Score: 78.08 E-value: 4.37e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 59 FIGLTNYKALFSDPAI----LQAYLFTFGFAIVTVAVVNLVAFLLAL-----GLTAKIRFTTTLRAIFVVPMVISGIIIS 129
Cdd:PRK10999 264 TIGWKNFTRVFTDEGIqkpfIAIFIWTVVFSLLTVVLTVAVGMVLAClvqweALKGKAVYRVLLILPYAVPSFISILIFK 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 130 YVFNFLFSNSLPALGEALGVS--WLetsllANPNLAWVAIVIVTAWQAIPsTMLIYIAGLL-SVPGEVYEAAEIDGASTL 206
Cdd:PRK10999 344 GLFNQSFGEINMMLSALFGIKpaWF-----SDPTLAKTMILIVNTWLGYP-YMMILCMGLLkAIPDDLYEASAMDGAGPF 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 207 QKLTRVTIPLVFGYVVINMILGLK-NFlNAYDIIVGLTNGGP---GTATRS------IAMTIISGFNGG---DYAYQMAN 273
Cdd:PRK10999 418 QNFFKITLPLLIKPLTPLMIASFAfNF-NNFVLIQLLTNGGPdmiGTTTPAgytdllVSYTYRIAFEGGggqDFGLAAAI 496
|
250 260
....*....|....*....|
gi 1828970548 274 ATIFFFVAIVIALLQLSATR 293
Cdd:PRK10999 497 ATLIFLLVGALAILNLKATK 516
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
23-287 |
1.75e-14 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 71.68 E-value: 1.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 23 FFLLPSVILFTLAITIPGLVGIFYSFTDS-IGIGDWKFIGLTNYKALFSDPAILQAYLFTFGFAIVTVAVVNLVAFLLAL 101
Cdd:COG1177 7 LLLRLFLALVLLFLYLPILVLVLYSFNDSwFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 102 GLT-AKIRFTTTLRAIFVVPMVISGIIISYVFNFLFSnslpalgeALGVSwletsllanpnLAWVAIVIVTAWQAIPSTM 180
Cdd:COG1177 87 ALArYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFS--------ALGLS-----------GGLWGLILAHVVFTLPFVV 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 181 LIYIAGLLSVPGEVYEAAEIDGASTLQKLTRVTIPLVFGYVVINMILGlknFLNAYD-IIVGLTNGGPGTATrsIAMTII 259
Cdd:COG1177 148 LVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLA---FTLSFDeFVITLFLAGPGVTT--LPVYIY 222
|
250 260
....*....|....*....|....*...
gi 1828970548 260 SGFNGGDYAYQMANATIFFFVAIVIALL 287
Cdd:COG1177 223 SMIRRGISPEINALSTLLILLSLLLLLL 250
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
22-217 |
3.76e-12 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 66.34 E-value: 3.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 22 YFFLLPSVILFTLAITIPGLVGIFYSFTDsigigdwkfiGLTNYKALFSDPAILQAYLFTFGFAIVTVAVVNLVAFLLAL 101
Cdd:COG1178 10 RLLLLLLALLLALLVLLPLLALLLRAFTD----------GLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAW 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 102 GLTA-KIRFTTTLRAIFVVPMVISGIIISYVFNFLFSNSLPalgeaLGVSWLETSLLANPNL-AWVAIVIVTAWQAIPST 179
Cdd:COG1178 80 LLARtDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGL-----LNTLLRALFGLEPPDIyGLGGIILVLVLFNYPYV 154
|
170 180 190
....*....|....*....|....*....|....*...
gi 1828970548 180 MLIYIAGLLSVPGEVYEAAEIDGASTLQKLTRVTIPLV 217
Cdd:COG1178 155 YLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLL 192
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
29-295 |
3.24e-11 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 63.64 E-value: 3.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 29 VILFTLAITIPGLVGIFYSFTDSIGIGdwkfIGLTNYKALFSDPAILQAYLFTFGFAIVTVAVVNLVAFLLALGLT-AKI 107
Cdd:COG1178 295 LLLVLLGLLLPLLALLLWSLTKALDDN----LTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRrRRG 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 108 RFTTTLRAIFVVPMVISGIIISYVFNFLFSNSLPALgealgvswletslLANpnlAWVAIVIVTAWQAIPSTMLIYIAGL 187
Cdd:COG1178 371 RLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLPLL-------------LYG---TLAILVLAYVVRFLPFALRSLEAAL 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 188 LSVPGEVYEAAEIDGASTLQKLTRVTIPLVFGYVVINMILGLKNFLNAYDIIVGLtnGGPGTATrsIAMTIISGFNGGDY 267
Cdd:COG1178 435 AQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLL--RPPGFET--LAVLIYQLASSGRY 510
|
250 260
....*....|....*....|....*...
gi 1828970548 268 AYQMANATIFFFVAIVIALLQLSATRGR 295
Cdd:COG1178 511 GEAAALALLLVLVSLLPVLLLERLLGRR 538
|
|
| UgpE |
COG0395 |
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ... |
7-287 |
1.65e-10 |
|
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440164 [Multi-domain] Cd Length: 282 Bit Score: 60.49 E-value: 1.65e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 7 ASPKARKKRRTEPVYYFFLlpsvILFTLAITIPGLVGIFYSFTDSIGI--GDWKFI----GLTNYKALFSDPAILQAYLF 80
Cdd:COG0395 3 ATARRRRRRLGRILLYLLL----ILLALLFLFPLYWMVVTSFKPPAEIfsGPPSLLpsefTLENYRAAFTDGPFGRYLLN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 81 TFGFAIVTVAVVNLVAFLLALGLtAKIRF--TTTLRAIFVVPMVISGIIISYVFNFLFSNslpalgeaLGvsWLETslla 158
Cdd:COG0395 79 SLIVAVVSTVLSLLLSSLAAYAL-ARFRFrgRKLLFLLILATLMIPGQVLLIPLYLLFRQ--------LG--LLNT---- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 159 npnlaWVAIVIVTAWQAIPSTMLIYIAGLLSVPGEVYEAAEIDGASTLQKLTRVTIPLVFGYVVINMILglkNFLNAY-D 237
Cdd:COG0395 144 -----YWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIF---TFIGAWnD 215
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1828970548 238 IIVGLT-NGGPGTATRSIAMTIISGFNGGDYAYQMANATIFFFVAIVIALL 287
Cdd:COG0395 216 FLWPLIlLTSPDLRTLPVGLASFQGQYGTDWGLLMAAAVIATLPVLILFLF 266
|
|
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
30-215 |
1.31e-09 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 58.54 E-value: 1.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 30 ILFTLAITIPGLVGIFYSFTDSIGIGDWKFIGLTNYKALFSDPAILQAYLFTFGFAIVTVAVVNLVAFLLALGLT-AKIR 108
Cdd:TIGR03262 8 AGMILALLLFLLLPLLALLTKSVYDSDGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTrSRIP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 109 FTTTLRAIFVVPMVISGIIISYVFNFLFSNSlpalgealGVswLETSLLANPNLAWVAIVIVTAWQAIPSTMLIYIAGLL 188
Cdd:TIGR03262 88 GKGAFRLVALLPLLAPSLLPAISLIYLFGNQ--------GL--LKGLLGGFSIYGFWGIVIGEVFYTFPHALMILVTALS 157
|
170 180
....*....|....*....|....*..
gi 1828970548 189 SVPGEVYEAAEIDGASTLQKLTRVTIP 215
Cdd:TIGR03262 158 LADGRLYEAARAMGASPWRTFFTVTLP 184
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
14-287 |
5.99e-07 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 49.75 E-value: 5.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 14 KRRTEPVYYFFLLPSVILFTLAITIPGLVGIFYSFTdsigigdwkfIGLTNYKALFSDPAILQAYLFTFGFAIVTVAVVN 93
Cdd:COG0555 2 SRRVLPGFGLTLGLTLLYLSLIVLLPLAALVLKAAG----------LGWAEFWAVLTSPRVLAALKLSLGTALIAALINL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 94 LVAFLLALGLTakiRFTTTLRAI--------FVVPMVISGIIISYVF--NFLFSNSLpalgEALGVSWLETsllanpnla 163
Cdd:COG0555 72 VFGLPLAWVLV---RYRFPGKRLvdalvdlpFALPTAVAGIALLLLFgpNGWLGQLL----APLGIKVAFT--------- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 164 WVAIVIVTAWQAIPSTMLIYIAGLLSVPGEVYEAAEIDGASTLQKLTRVTIPLVFGYVVINMILGLKNFLNAYDIIVGLT 243
Cdd:COG0555 136 PLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIA 215
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1828970548 244 NGGPGTaTRSIAMTIISGFNGGDYAYQMANATIFFFVAIVIALL 287
Cdd:COG0555 216 GNLPMK-TEILPLLIYLKLEEGDYAGATAIALVLLLISFLLLLL 258
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
134-287 |
2.97e-05 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 43.83 E-value: 2.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 134 FLFSNSLPALgeALGVSWLETSLLANPNLAWVAIVIVTAWQAIPSTMLIYIAGLLSVPGEVYEAAEIDGASTLQKLTRVT 213
Cdd:pfam00528 24 IDLLQALPSF--VLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKII 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1828970548 214 IPLVFGYVVINMILGLKNFLNAYDIIVGLTNGGPgtatrsIAMTIISGFNGGDYAYQMANATIFFFVAIVIALL 287
Cdd:pfam00528 102 LPNALPPILTGLALAFGGALGGAVLLEFLGSWPG------LGLLLIEAILGYDYPEIQGPVLAAALILLLLNLL 169
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
78-282 |
3.01e-05 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 43.81 E-value: 3.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 78 YLFTFGFAIVTVAVVNLVAFLLALGLTAKIR-----FTTTLRAIFVVPMVISGIIISYVFNFLFSNSLpalgealgvswl 152
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGkldrlLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGI------------ 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828970548 153 etsllaNPNLAWVAIVIVTAWQAiPSTMLIYIAGLLSVPGEVYEAAEIDGASTLQKLTRVTIPLVFGYVVINMILGLKNF 232
Cdd:cd06261 69 ------LPGLGLPALILALLLIA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARA 141
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1828970548 233 LNAYDIIVGLTNGGPGTATrSIAMTIISGFNGGDYAYQMANATIFFFVAI 282
Cdd:cd06261 142 LGEFALVSFLGGGEAPGPG-TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
|