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Conserved domains on  [gi|1824669244|ref|YP_009740716|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Euparatettix variabilis]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 1-164 1.61e-22

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 87.55  E-value: 1.61e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824669244   1 MKTIITLCTMMSMFLMNTKQPMQMIIIILLQTLLTTFMMSTMTKSSWCTYILMIIFIGGMMVLFIYITSISPNEQNKNNL 80
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824669244  81 MIIITMTMIISIIMINMKttktINNETMSMETINLMKTEQMMLNKIFNKPMYTLTIMMMLYLFIALIAVNKISNLNKGPL 160
Cdd:MTH00166   81 KLLILFLLMLLLMLNNFI----KNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKGPL 156


                  ....
gi 1824669244 161 RKMN 164
Cdd:MTH00166  157 RSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 1-164 1.61e-22

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 87.55  E-value: 1.61e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824669244   1 MKTIITLCTMMSMFLMNTKQPMQMIIIILLQTLLTTFMMSTMTKSSWCTYILMIIFIGGMMVLFIYITSISPNEQNKNNL 80
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824669244  81 MIIITMTMIISIIMINMKttktINNETMSMETINLMKTEQMMLNKIFNKPMYTLTIMMMLYLFIALIAVNKISNLNKGPL 160
Cdd:MTH00166   81 KLLILFLLMLLLMLNNFI----KNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKGPL 156


                  ....
gi 1824669244 161 RKMN 164
Cdd:MTH00166  157 RSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 1-164 1.61e-22

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 87.55  E-value: 1.61e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824669244   1 MKTIITLCTMMSMFLMNTKQPMQMIIIILLQTLLTTFMMSTMTKSSWCTYILMIIFIGGMMVLFIYITSISPNEQNKNNL 80
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824669244  81 MIIITMTMIISIIMINMKttktINNETMSMETINLMKTEQMMLNKIFNKPMYTLTIMMMLYLFIALIAVNKISNLNKGPL 160
Cdd:MTH00166   81 KLLILFLLMLLLMLNNFI----KNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKGPL 156


                  ....
gi 1824669244 161 RKMN 164
Cdd:MTH00166  157 RSKN 160
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 38-162 2.41e-05

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 42.30  E-value: 2.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824669244  38 MMSTMTKSSWCTYILMIIFIGGMMVLFIYITSISPNEQNKNNLMIIITMTMIISIIMINMKTTKTINNetmsmETINLMK 117
Cdd:MTH00212   39 LIITMESNSWYGYILFLIYIGGLLVLFGYMVALSPNEHLFFKKYFKGFGMILISLNLYLLLMTLGSSN-----FSPMLNL 113

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1824669244 118 TEQMMLNKIFNKPMYTLTIMMMLYLFIALIAVNKISNLNKGPLRK 162
Cdd:MTH00212  114 KLELNVSKILSNNNIPILLFLGLILLIALLMVVKICQYYKGPLRP 158
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-161 1.51e-04

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 39.87  E-value: 1.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824669244   1 MKTIITLCTMMSMFLMNTKQPMQMIIIILLQTLLTTFMMStMTKSSWCTYILMIIFIGGMMVLFIYITSISPNEQNKNNL 80
Cdd:MTH00152    3 LMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIG-LTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGSNF 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824669244  81 MIIITMTMIISIIMINMKTTKTINNETMSMETINLMKTEQMML-NKIFNKPMYTLTIMMMLYLFIALIAVNKISNLNKGP 159
Cdd:MTH00152   82 KFVFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSFgGGLYSSSGWSIFVFLAVLLLIVMVSVVKICYYEEGS 161


                  ..
gi 1824669244 160 LR 161
Cdd:MTH00152  162 LR 163
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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