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Conserved domains on  [gi|1824665769|ref|YP_009740638|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Bryodemella holdereri holdereri]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-173 3.12e-35

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 120.68  E-value: 3.12e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665769   3 KMLIMSMSNMLNINFINMNHPMLLMIMIIIQTLLIGVMTGLMMESFWLSYILFLTFIGGMMVLFIYITSISSNEMFNIKS 82
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665769  83 MSMIFIMITMLimmiviystekILFTEMIKSTETMNMKYTMNFQEMTMSLTKLYNNPTLIITIMMMIYLFMALLAVVKIN 162
Cdd:MTH00166   81 KLLILFLLMLL-----------LMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                         170
                  ....*....|.
gi 1824665769 163 NINKGPIRKMK 173
Cdd:MTH00166  150 NIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-173 3.12e-35

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 120.68  E-value: 3.12e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665769   3 KMLIMSMSNMLNINFINMNHPMLLMIMIIIQTLLIGVMTGLMMESFWLSYILFLTFIGGMMVLFIYITSISSNEMFNIKS 82
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665769  83 MSMIFIMITMLimmiviystekILFTEMIKSTETMNMKYTMNFQEMTMSLTKLYNNPTLIITIMMMIYLFMALLAVVKIN 162
Cdd:MTH00166   81 KLLILFLLMLL-----------LMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                         170
                  ....*....|.
gi 1824665769 163 NINKGPIRKMK 173
Cdd:MTH00166  150 NIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-173 3.12e-35

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 120.68  E-value: 3.12e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665769   3 KMLIMSMSNMLNINFINMNHPMLLMIMIIIQTLLIGVMTGLMMESFWLSYILFLTFIGGMMVLFIYITSISSNEMFNIKS 82
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665769  83 MSMIFIMITMLimmiviystekILFTEMIKSTETMNMKYTMNFQEMTMSLTKLYNNPTLIITIMMMIYLFMALLAVVKIN 162
Cdd:MTH00166   81 KLLILFLLMLL-----------LMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                         170
                  ....*....|.
gi 1824665769 163 NINKGPIRKMK 173
Cdd:MTH00166  150 NIFKGPLRSKN 160
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-171 1.02e-09

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 54.24  E-value: 1.02e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665769   1 MFKMLIMSMSNMLNINFINMNHPMLLMIMIIIQTLLIGVMTGLMMESfWLSYILFLTFIGGMMVLFIYITSISSNEMFNI 80
Cdd:MTH00212    1 MLLSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLIITMESNS-WYGYILFLIYIGGLLVLFGYMVALSPNEHLFF 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665769  81 KSMSMIFIMITMLIMMIViysteKILFTEMIKSTETMNMKYTMNFqemtmslTKLYNNPTLIITIMMMIYLFMALLAVVK 160
Cdd:MTH00212   80 KKYFKGFGMILISLNLYL-----LLMTLGSSNFSPMLNLKLELNV-------SKILSNNNIPILLFLGLILLIALLMVVK 147

                         170
                  ....*....|.
gi 1824665769 161 INNINKGPIRK 171
Cdd:MTH00212  148 ICQYYKGPLRP 158
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-170 1.62e-05

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 42.95  E-value: 1.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665769   1 MFKMLIMSMSNMLNINFINMNHPMLLMIMIIIQTLLIGVMTGLMMeSFWLSYILFLTFIGGMMVLFIYITSISSNEMFNI 80
Cdd:MTH00152    1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTL-SSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGS 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665769  81 KSMSMIFIMITMLIMMIVIYSTEKILFTEMIKSTETMNMKYTMNFQEMTMSLTKLYnnptliITIMMMIYLFMALLAVVK 160
Cdd:MTH00152   80 NFKFVFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWS------IFVFLAVLLLIVMVSVVK 153

                         170
                  ....*....|
gi 1824665769 161 INNINKGPIR 170
Cdd:MTH00152  154 ICYYEEGSLR 163
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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