|
Name |
Accession |
Description |
Interval |
E-value |
| ND4 |
MTH00163 |
NADH dehydrogenase subunit 4; Provisional |
1-444 |
6.15e-158 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214443 [Multi-domain] Cd Length: 445 Bit Score: 453.84 E-value: 6.15e-158
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 1 MLKYLLMLCFLIPISLLESCWWLVHALMFLLSFIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITASSSIY 80
Cdd:MTH00163 1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 81 LFSYHSSFFILLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFK 160
Cdd:MTH00163 81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 161 VNSIFNTLYFPLLFDCGSFYFMFYIFILLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISF 240
Cdd:MTH00163 161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 241 LGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNI 320
Cdd:MTH00163 241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 321 IYERLGSRSLLINSGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSVISWSPYMFLLLIFLSFFSAVYTLYMYS 400
Cdd:MTH00163 321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1824665753 401 YSQHGFYYSGIYTCSLGYFREYHLLFLHWFPLNILCLKGEYFYF 444
Cdd:MTH00163 401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
|
|
| ND4 |
MTH00150 |
NADH dehydrogenase subunit 4; Provisional |
31-442 |
1.08e-112 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214435 [Multi-domain] Cd Length: 417 Bit Score: 337.58 E-value: 1.08e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 31 LSFIFMFSvySYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITASSSIYLFSYHSSFFILLVLLLLVTLYCSFSSLSLL 110
Cdd:MTH00150 1 LSLLLLYS--SFSSYESLSELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSSFSLLVLLLCLILVLAFSVSSLL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 111 SFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVNSIFNTLYFPLLFDCGSFYFM---FYIFI 187
Cdd:MTH00150 79 MFYFFFEASLIPTLLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLISSLRKLLSSmglWGLLV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 188 LLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQ 267
Cdd:MTH00150 159 FLAFLVKLPMYPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQ 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 268 VDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGMINLMPTMSFWW 347
Cdd:MTH00150 239 SDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWW 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 348 FLLSSSNMAAPPSLNLFGEFSLLNSVISWSPYMFLLLIFLSFFSAVYTLYMYSYSQHGFYYSGIYTCSLGYFREYHLLFL 427
Cdd:MTH00150 319 FLFCIINMAAPPSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLL 398
|
410
....*....|....*
gi 1824665753 428 HWFPLNILCLKGEYF 442
Cdd:MTH00150 399 HWVPLLLLILKSDLL 413
|
|
| ND4 |
MTH00014 |
NADH dehydrogenase subunit 4; Validated |
1-440 |
2.70e-110 |
|
NADH dehydrogenase subunit 4; Validated
Pssm-ID: 214399 [Multi-domain] Cd Length: 452 Bit Score: 332.48 E-value: 2.70e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 1 MLKYLLMLCFLIPISLLESCWWL---VHALMFLLSFIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITASS 77
Cdd:MTH00014 1 MLKLIMPLISLLLLPLIKYPWSWaltFSTLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILASF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 78 SIYLFSYHSSFFILLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLV 157
Cdd:MTH00014 81 KIFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 158 LFKVNSIFNTLYFPLL---FDCGSFYFMFYIFILLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV 234
Cdd:MTH00014 161 ILLIFYTNNSLSMLMSsmePPSIYLMNLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 235 MKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGL 314
Cdd:MTH00014 241 SSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSSAL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 315 FCLSNIIYERLGSRSLLINSGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSVISWSPYMFLLLIFLSFFSAVY 394
Cdd:MTH00014 321 FALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITSFLAAAY 400
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1824665753 395 TLYMYSYSQHGFYYSGIYTCSLGYFREYHLLFLHWFPLNILCLKGE 440
Cdd:MTH00014 401 SLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPD 446
|
|
| ND4 |
MTH00124 |
NADH dehydrogenase subunit 4; Provisional |
1-440 |
1.34e-108 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214427 [Multi-domain] Cd Length: 457 Bit Score: 328.31 E-value: 1.34e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 1 MLKYLLMLCFLIPISLL---ESCWWLVHALMFLLSFI-FMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITAS 76
Cdd:MTH00124 1 MLKIILPTIMLIPTTLLskpKFLWTNTTTYSLLIALLsLQWLKPPYYPTKNLTQWLGIDQISAPLLVLSCWLLPLMILAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 77 SS--IYLFSYHSSFFILLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPL 154
Cdd:MTH00124 81 QNhlQHEPLQRKRTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 155 LLVLFKVNSIFNTLYFPLLFDCGSF------YFMFYIFILLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGG 228
Cdd:MTH00124 161 LIAILYLHNQTGTLSLPMLQLTHPTltnswtNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 229 YGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHG 308
Cdd:MTH00124 241 YGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 309 LCSSGLFCLSNIIYERLGSRSLLINSGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSVISWSPYMFLLLIFLS 388
Cdd:MTH00124 321 LTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLAT 400
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 1824665753 389 FFSAVYTLYMYSYSQHGFYYSGIYTCSLGYFREYHLLFLHWFPLNILCLKGE 440
Cdd:MTH00124 401 LITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPE 452
|
|
| ND4 |
MTH00205 |
NADH dehydrogenase subunit 4; Provisional |
2-444 |
4.35e-106 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214457 [Multi-domain] Cd Length: 448 Bit Score: 321.54 E-value: 4.35e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 2 LKYLLMLCFLIPISLLESCWW--LVHALMFLLSFIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITASSSI 79
Cdd:MTH00205 1 MSIFGVFSLLIILFVLKFKDWsfFSNLLLIGLFFSSFFFSNSFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 80 YLFSYHSSFFILLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLF 159
Cdd:MTH00205 81 FKSNKNSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 160 KVNSIFNTLYFPLLFDCGSFYFM---FYIFILLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMK 236
Cdd:MTH00205 161 FLNSLNFSLSMFFNFPLNFSDFYlflYWIFLMLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 237 IISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFC 316
Cdd:MTH00205 241 MLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 317 LSNIIYERLGSRSLLINSGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSVISWSPYMFLLLIFLSFFSAVYTL 396
Cdd:MTH00205 321 LANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSL 400
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 1824665753 397 YMYSYSQHGFYYSGIYTCSLGYFREYHLLFLHWFPLNILCLKGEYFYF 444
Cdd:MTH00205 401 YLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFIC 448
|
|
| ND4 |
MTH00068 |
NADH dehydrogenase subunit 4; Provisional |
1-440 |
5.65e-102 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214417 [Multi-domain] Cd Length: 458 Bit Score: 311.47 E-value: 5.65e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 1 MLKYLLMLCFLIPISLLESCWWLVHALMFLLSFIFMFSV----YSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITAS 76
Cdd:MTH00068 1 MLKIIIPTLMLLPTTWLSPKKWLWTLTTTNSLIIAFLSLmwfnLPSETMNFTNKYFGIDQISSPLLILTCWLLPLMILAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 77 SSIYLFS--YHSSFFILLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPL 154
Cdd:MTH00068 81 QNHLKNEpiNRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 155 LLVLFKVNSIFNTLYFPLLFDCGSFYFM------FYIFILLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGG 228
Cdd:MTH00068 161 LIALLILQNSLGSLSLILLELMSPMQLMtytnkiWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 229 YGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHG 308
Cdd:MTH00068 241 YGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 309 LCSSGLFCLSNIIYERLGSRSLLINSGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSVISWSPYMFLLLIFLS 388
Cdd:MTH00068 321 LTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGT 400
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 1824665753 389 FFSAVYTLYMYSYSQHGFYYSGIYTCSLGYFREYHLLFLHWFPLNILCLKGE 440
Cdd:MTH00068 401 LITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPE 452
|
|
| ND4 |
MTH00044 |
NADH dehydrogenase subunit 4; Validated |
5-432 |
2.49e-95 |
|
NADH dehydrogenase subunit 4; Validated
Pssm-ID: 214411 [Multi-domain] Cd Length: 458 Bit Score: 294.19 E-value: 2.49e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 5 LLMLCFLIPISLLESCWWLVHALMFLLSfIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITASSSIYLFSY 84
Cdd:MTH00044 11 IAITSWIVPKNKLWPISISQSSLISLLS-LFLLNNHWSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLASINHLSNNS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 85 HSS--FFILLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVN 162
Cdd:MTH00044 90 PNNqrTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLPLLISLIAIY 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 163 SIFNTLYFPLLFDC------GSFYFMFYIFILLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMK 236
Cdd:MTH00044 170 SSSSSLSIPLSELNwltslsSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGLIRLIN 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 237 IISFLGLSF-NYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLF 315
Cdd:MTH00044 250 LFSLPSANNiSFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSALF 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 316 CLSNIIYERLGSRSLLINSGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSVISWSPYMFLLLIFLSFFSAVYT 395
Cdd:MTH00044 330 CLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGLATVFGAIYS 409
|
410 420 430
....*....|....*....|....*....|....*..
gi 1824665753 396 LYMYSYSQHGFYYSGIYTCSLGYFREYHLLFLHWFPL 432
Cdd:MTH00044 410 LLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPL 446
|
|
| ND4 |
MTH00110 |
NADH dehydrogenase subunit 4; Provisional |
1-437 |
8.97e-93 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 177172 [Multi-domain] Cd Length: 459 Bit Score: 287.94 E-value: 8.97e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 1 MLKYLLMLCFLIPISLLESCWWL-----VHALMFLLSFIFMFSVYSYSDLNMIGYFFgIDYFSFMLILLSFWIVSLMITA 75
Cdd:MTH00110 1 MLKIIIPTIMLIPLTWLSKNNMIwinttTYSLLISLISLLLLNQPNDNSLNFSLLFF-SDSLSTPLLILTTWLLPLMLMA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 76 SSSiYLFS---YHSSFFILLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASL 152
Cdd:MTH00110 80 SQH-HLSKeplTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 153 PLLLVLF-------KVNSIFNTLYFPLLFDCGSFYFMFYIFILlAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLK 225
Cdd:MTH00110 159 PLLVALLyiqnnlgSLNFLLLQLWAQPLPNSWSNNLLWLACMM-AFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLK 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 226 LGGYGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMV 305
Cdd:MTH00110 238 LGGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMI 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 306 GHGLCSSGLFCLSNIIYERLGSRSLLINSGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSVISWSPYMFLLLI 385
Cdd:MTH00110 318 AHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMG 397
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 1824665753 386 FLSFFSAVYTLYMYSYSQHGFYYSGIYTCSLGYFREYHLLFLHWFPLNILCL 437
Cdd:MTH00110 398 LNMLITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSL 449
|
|
| ND4 |
MTH00206 |
NADH dehydrogenase subunit 4; Provisional |
5-432 |
1.35e-91 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214458 [Multi-domain] Cd Length: 450 Bit Score: 284.52 E-value: 1.35e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 5 LLMLCFLIPISLLESCWWLVHALMFLLSFIFMFSVYSYSDLNMIG--YFFGIDYFSFMLILLSFWIVSLMITASSSIYLF 82
Cdd:MTH00206 6 LIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFsnLYLSYDPLSSPLVILSCWLLPLMFLASQNHMKN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 83 SYHS--SFFILLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFK 160
Cdd:MTH00206 86 EPINrqRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALLF 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 161 VNSIFNTLYFPLL---FDCGSFYFMFYIFILLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKI 237
Cdd:MTH00206 166 LQNSLGSLSLYILyfsKLTTWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILI 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 238 ISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCL 317
Cdd:MTH00206 246 LGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCL 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 318 SNIIYERLGSRSLLINSGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSVISWSPYMFLLLIFLSFFSAVYTLY 397
Cdd:MTH00206 326 ANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSLY 405
|
410 420 430
....*....|....*....|....*....|....*
gi 1824665753 398 MYSYSQHGFYYSGIYTCSLGYFREYHLLFLHWFPL 432
Cdd:MTH00206 406 MFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPV 440
|
|
| ND4 |
MTH00127 |
NADH dehydrogenase subunit 4; Provisional |
1-440 |
8.55e-85 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 177186 [Multi-domain] Cd Length: 459 Bit Score: 267.21 E-value: 8.55e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 1 MLKYLLMLCFLIPISLLESCWWL-----VHALMFLLSFIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITA 75
Cdd:MTH00127 1 MLKILIPTLMLIPTTWLTPAKWLwtttlAHSLLIALASLTWLKNLSETGWSSLNLYMATDPLSTPLLVLTCWLLPLMILA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 76 SSSIYLFSYHSS--FFILLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLP 153
Cdd:MTH00127 81 SQNHTAPEPINRqrMYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 154 LLLVLFKVNSIFNTL------YFPLLFDCGSFYFMFYIFILLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00127 161 LLVALLLLQNSTGTLsmltlqYSQPLQLSSWADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 228 GYGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGH 307
Cdd:MTH00127 241 GYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAH 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 308 GLCSSGLFCLSNIIYERLGSRSLLINSGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSVISWSPYMFLLLIFL 387
Cdd:MTH00127 321 GLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLG 400
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1824665753 388 SFFSAVYTLYMYSYSQHGFYYSGIYTCSLGYFREYHLLFLHWFPLNILCLKGE 440
Cdd:MTH00127 401 TLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPE 453
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
113-379 |
4.34e-54 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 182.13 E-value: 4.34e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 113 YIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVNSIFNTLYFPLLF------DCGSFYFMFYIF 186
Cdd:pfam00361 8 YLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSkaltggLNSSGLLLLFLL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 187 ILLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFICIR 266
Cdd:pfam00361 88 ILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALV 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 267 QVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLS-NIIYERLGSRSLLINSGMINLMPTMSF 345
Cdd:pfam00361 168 QTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILAL 247
|
250 260 270
....*....|....*....|....*....|....
gi 1824665753 346 WWFLLSSSNMAAPPSLNLFGEFSLLNSVISWSPY 379
Cdd:pfam00361 248 VFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWI 281
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
113-399 |
5.13e-52 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 182.20 E-value: 5.13e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 113 YIFFESSLIPTMLLILGWGYqPERLQAGIYLIFYTLVASLPLL---LVLFKVNSIFNTLYFPLLFDCGSFYFMFYIFI-- 187
Cdd:COG1008 137 YVFWELMLIPMYFLIGIWGG-ERRIYAAIKFFLYTLAGSLLMLvaiLALYFLAGALTFDIAELAAAPLPLTAQLLLFLaf 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 188 LLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMkiisfLGL------SFNYFWLSLSLFGGVIVS 261
Cdd:COG1008 216 FIAFAVKVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFA-----LPLfpeasaYFAPLLAALGVIGIIYGA 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 262 FICIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGMINLMP 341
Cdd:COG1008 291 LVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMP 370
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1824665753 342 TMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSVISWSPYMFLLLIFLSFFSAVYTLYMY 399
Cdd:COG1008 371 VLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
|
|
| ND4 |
MTH00217 |
NADH dehydrogenase subunit 4; Provisional |
113-399 |
3.04e-47 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214462 [Multi-domain] Cd Length: 482 Bit Score: 169.08 E-value: 3.04e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 113 YIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVNSIFNTLYFPLL----FDCGSFYFMFYIFiL 188
Cdd:MTH00217 135 YILFEGILIPMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDYQALcclkIEKELQYFIFLGF-F 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 189 LAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQ 267
Cdd:MTH00217 214 LSLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFsWPLLPEASEYFSPLIQTLSLLAIIYGSLTTCRQ 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 268 VDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGMINLMPTMSFWW 347
Cdd:MTH00217 294 VDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILM 373
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1824665753 348 FLLSSSNMAAPPSLNLFGEFSLLNSVISWSPYMFLLLIFLSFFSAVYTLYMY 399
Cdd:MTH00217 374 LLLVLANASIPLSCNFVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYLY 425
|
|
| ND4 |
MTH00226 |
NADH dehydrogenase subunit 4; Provisional |
52-397 |
1.26e-46 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214466 [Multi-domain] Cd Length: 505 Bit Score: 168.18 E-value: 1.26e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 52 FGIDYFSFMLILLSFWIV--SLMITASSSIYLfsyhSSFFILLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILG 129
Cdd:MTH00226 98 FAVDGISIYFIILTGFIVpcSILISWHSVKYL----TKSFLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGI 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 130 WGYQPERLQAGIYLIFYTLVASLPLLLVLFKVNSIFNTLYFPLLFDC-----GSFYFMFYIFILLAFLVSMPMFLFHLWL 204
Cdd:MTH00226 174 WGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTLASCshvvsEQTQKWIFLGIFLAMAVKIPIFPFHIWL 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 205 PKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGL-SFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSIAHMS 283
Cdd:MTH00226 254 PKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGAqNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMG 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 284 MVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGMINLMPTMSFWWFLLSSSNMAAPPSLNL 363
Cdd:MTH00226 334 LVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNF 413
|
330 340 350
....*....|....*....|....*....|....
gi 1824665753 364 FGEFSLLNSVISWSPYMFLLLIFLSFFSAVYTLY 397
Cdd:MTH00226 414 IGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFY 447
|
|
| ND4 |
MTH00204 |
NADH dehydrogenase subunit 4; Provisional |
113-399 |
1.47e-46 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 164750 [Multi-domain] Cd Length: 485 Bit Score: 167.55 E-value: 1.47e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 113 YIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVNSIFNTL-YFPLLFDCGSFYFMFYIFI--LL 189
Cdd:MTH00204 138 YILFEGILIPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTdYQILLNIKLPLSIQKWLLVgfFL 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 190 AFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQV 268
Cdd:MTH00204 218 SLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFsWPLFPAASEYFAPLIVMLSVIAVIYGSLTTCRQV 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 269 DLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGMINLMPTMSFWWF 348
Cdd:MTH00204 298 DFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIML 377
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1824665753 349 LLSSSNMAAPPSLNLFGEFSLLNSVISWSPYMFLLLIFLSFFSAVYTLYMY 399
Cdd:MTH00204 378 VLSLANMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLY 428
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
23-399 |
5.67e-45 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 163.45 E-value: 5.67e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 23 LVHALMFLLSFIFMFSVYSYSDLNM-------------IGYFFGIDYFSFMLILLSFWIVSLMITASSSIylFSYHSSFF 89
Cdd:PRK05846 36 LIGTLLTLLLSLVLWIGFDSSNAGFqfvekhpwiprfgISYHLGVDGISLLLVVLTALLTPLAVLASWEE--IKKRVKFY 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 90 ILLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYqPERLQAGIYLIFYTLVASLPLLLVLFkvnsifnTLY 169
Cdd:PRK05846 114 MAALLWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGVWGG-KNRIYAATKFFLYTLLGSLLMLVAII-------YLV 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 170 FPLLFDCGSF---------------YFMFYIFiLLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV 234
Cdd:PRK05846 186 VVYYNATGTFdiadllnlplppgvqYWLFLAF-FIAFAVKMPMFPLHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRF 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 235 MkiisfLGL------SFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHG 308
Cdd:PRK05846 265 S-----LPLfpdashEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHG 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 309 LCSSGLFCLSNIIYERLGSRSLLINSGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSVISWSPYMFLLLIFLS 388
Cdd:PRK05846 340 LSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLGSFQVNPVIAFIATTGL 419
|
410
....*....|.
gi 1824665753 389 FFSAVYTLYMY 399
Cdd:PRK05846 420 ILAAVYSLWLY 430
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
48-399 |
2.29e-42 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 155.87 E-value: 2.29e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 48 IGYFFGIDYFSFMLILLSFWIVSLMITASSsiYLFSYHSSFFILLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLI 127
Cdd:TIGR01972 69 ISYHLGVDGISLLLVLLTALLTLLAILASW--ESIQKRVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLI 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 128 LGWGyQPERLQAGIYLIFYTLVASLPLLLVL----FKVNSIFNTLYFPLLFDCGSFYFMFYIFILLAFLVSMPMFLFHLW 203
Cdd:TIGR01972 147 GVWG-GPNRIYAAMKFFLYTLAGSLLMLLAIlglyFLGGGTFDLLELLNLPLPFGVQTWLFLAFFIAFAVKVPLFPLHTW 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 204 LPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSIAHM 282
Cdd:TIGR01972 226 LPDAHVEAPTAGSVILAGVLLKMGTYGFLRFnLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHM 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 283 SMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGMINLMPTMSFWWFLLSSSNMAAPPSLN 362
Cdd:TIGR01972 306 GFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSG 385
|
330 340 350
....*....|....*....|....*....|....*..
gi 1824665753 363 LFGEFSLLNSVISWSPYMFLLLIFLSFFSAVYTLYMY 399
Cdd:TIGR01972 386 FVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
|
|
| ND4 |
MTH00094 |
NADH dehydrogenase subunit 4; Provisional |
19-419 |
6.25e-41 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 177157 [Multi-domain] Cd Length: 403 Bit Score: 150.44 E-value: 6.25e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 19 SCWWLVHALMFLLsFIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITASSSIYLFSYHSSFFILLVllllv 98
Cdd:MTH00094 2 SLLFFFSPFLFFL-FLMFFSFLMFNNYSWSGLFFFFDSFVFVLLIFMMVFILGLVLLSEKNFNLLILSNLLILIC----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 99 tlYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVNSIFNTLYFPLLFDcgs 178
Cdd:MTH00094 76 --LLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLKNFFFFSLCYFDFFLS--- 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 179 fyFMFYIFILLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLglsFNYFWLSLSLFGGV 258
Cdd:MTH00094 151 --WEMFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGSLNFV---YNNFWIIFSLLGMI 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 259 IVSFICIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGMIN 338
Cdd:MTH00094 226 LSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFS 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 339 LMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSVISWSPYMFLLLIFLSFFSAVYTLYMYSYSQHGFYYSGIYTCSLGY 418
Cdd:MTH00094 306 SSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVGL 385
|
.
gi 1824665753 419 F 419
Cdd:MTH00094 386 S 386
|
|
| PRK12561 |
PRK12561 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
113-364 |
2.86e-28 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 116.67 E-value: 2.86e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 113 YIFFESSLIPTMLLILGWGYQpERLQAGIYLIFYTLVASLPLL-----LVLFKVNSIFNTLYFPLLFDCGSFYFMFYIFI 187
Cdd:PRK12561 113 FLMWELELVPVYLLISIWGGQ-KRLYAATKFILYTALASIFILvaglaLALSGDTFTFDLAELGAKSYPLALELLLYAGF 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 188 LLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLSFNYFWLSLSLFGGVIVSFICIR 266
Cdd:PRK12561 192 LIAFGVKLPIFPLHTWLPDAHGEASAPVSMILAGVLLKMGGYALIRFnVQMLPDAHVYFAPALAILGVVNIIYGALNAFA 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 267 QVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGMINLMPTmSFW 346
Cdd:PRK12561 272 QDNVKRRLAYSSVSHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPK-TFA 350
|
250
....*....|....*...
gi 1824665753 347 WFLLSSSNMAAPPSLNLF 364
Cdd:PRK12561 351 LFTASSMASLALPGMSGF 368
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
113-379 |
1.26e-26 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 111.01 E-value: 1.26e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 113 YIFFESSLIPTMLLILGWGYqPERLQAGIYLIFYTLVASLPLLLVLFKVNSIFNTLYFPLL------FDCGSFYFMFyIF 186
Cdd:COG0651 133 FVFFEVMLLASYGLVALGGT-KEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarlaeLDPGLLLAAF-AL 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 187 ILLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKII--SFLGLSFNYFWLSLSLFGGVIVSFIC 264
Cdd:COG0651 211 LLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLfgADPALFLGTLLLVLGLLTMLVGALGA 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 265 IRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGMINLMPTMS 344
Cdd:COG0651 291 LAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTA 370
|
250 260 270
....*....|....*....|....*....|....*
gi 1824665753 345 FWWFLLSSSNMAAPPSLNLFGEFSLLNSVISWSPY 379
Cdd:COG0651 371 AAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAW 405
|
|
| PRK06473 |
PRK06473 |
NADH-quinone oxidoreductase subunit M; |
50-338 |
1.53e-22 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 235810 [Multi-domain] Cd Length: 500 Bit Score: 99.77 E-value: 1.53e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 50 YFFGIDYFSFMLILLSFWIVSLMITASSSIYlfsYHSSFFILLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILG 129
Cdd:PRK06473 73 YHLGVDGLSLPLLVLNSLLTLIAIYSSDESI---QRPRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAI 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 130 WGYQpERLQAGIYLIFYTLVASLPLL---LVLFKVNSIFNTLYFPLLFDC--GSFYFMFYIFILLAFLVSMPMFLFHLWL 204
Cdd:PRK06473 150 WGGQ-RRGYAATKFLLYTAISGILILvsfLGLVWLSGASSFDYEPLRSHTlpLSTQLLLLAPILVGFGIKIPLVPFHTWL 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 205 PKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFIC-IRQVDLKSLIAYSSIAHMS 283
Cdd:PRK06473 229 PDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLATWAVVSVLYGASCaIAQKDMKKMVAYSSIGHMG 308
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1824665753 284 MVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGMIN 338
Cdd:PRK06473 309 YILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLLN 363
|
|
| PRK02546 |
PRK02546 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
53-358 |
1.66e-21 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 235050 [Multi-domain] Cd Length: 525 Bit Score: 96.70 E-value: 1.66e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 53 GIDYFSFMLILLSFWIVSLMITASSSIylfSYHSSFFILLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGY 132
Cdd:PRK02546 84 GADGLSMPLILLTGFITTLAVLAAWPV---TFKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGG 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 133 QpERLQAGIYLIFYTLVASLPLLLVLFKVNSIFNTLYFPLL------FDCGsFYFMFYIFILLAFLVSMPMFLFHLWLPK 206
Cdd:PRK02546 161 K-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMTalaakdFGLG-FQLLCYAGLLIAYGVKLPIVPLHTWLPD 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 207 AHVEAPISGSMILAGVLLKLGGYGIFRVMkiISFLGLSFNYFWLSLSLFGGVIVSFICIR---QVDLKSLIAYSSIAHMS 283
Cdd:PRK02546 239 AHGEATAPVHMLLAGILLKMGGYALLRMN--AGMLPDAHAQFAPLLIVLGVVNIIYAALTsfaQRNLKRKIAYSSISHMG 316
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1824665753 284 MVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGMINLMPTMSFWWFLLSSSNMAAP 358
Cdd:PRK02546 317 FVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALP 391
|
|
| ndhD |
CHL00011 |
NADH dehydrogenase subunit 4 |
113-358 |
2.40e-20 |
|
NADH dehydrogenase subunit 4
Pssm-ID: 176954 [Multi-domain] Cd Length: 498 Bit Score: 93.09 E-value: 2.40e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 113 YIFFESSLIPTMLLILGWGYQpERLQAGIYLIFYTLVASLPLLLVLFKV---NSIFNTLYFPLLFDCG---SFYFMFYIF 186
Cdd:CHL00011 138 FIMWELELIPVYLLLSMWGGK-KRLYSATKFILYTAGGSIFLLIGVLGMglyGSNEPTLNFETLANQSypvALEILFYIG 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 187 ILLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLSFNYFWLSLSLFGGVIVSFICI 265
Cdd:CHL00011 217 FLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRInMELLPHAHSIFSPWLVIVGAIQIIYAASTSL 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 266 RQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGMINLMPTMSF 345
Cdd:CHL00011 297 GQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFT 376
|
250
....*....|...
gi 1824665753 346 WWFLLSSSNMAAP 358
Cdd:CHL00011 377 MFSSFSMASLALP 389
|
|
| ND4 |
MTH00062 |
NADH dehydrogenase subunit 4; Provisional |
27-380 |
9.83e-18 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214413 [Multi-domain] Cd Length: 417 Bit Score: 84.59 E-value: 9.83e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 27 LMFLLSFIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITASSSiyLFSYHSSFFILLVLLLLVTLYCSFSS 106
Cdd:MTH00062 16 LLFCLLYSSGVGCCILVVNNVFNGLFIFDSLSFYLILLVLFLGLYSQVMFYN--LLSGVSRFFLFLSLIFSILCFCVNNS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 107 LSLlsfYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVNSIFNTLYFPLLFDCGSFYFMFYIF 186
Cdd:MTH00062 94 LLF---WFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSDWGSDDSVSLIVYYV 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 187 ILLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRvmkIISFLGLSFNYFWLSLSLFGGVIVSFICIR 266
Cdd:MTH00062 171 LSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYR---FCGFIFSGSFLGYLFLCCLFSVFFLITACS 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 267 QVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGMINLMPTMSFW 346
Cdd:MTH00062 248 ELDGKRWLAFLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGINGSLVLRVI 327
|
330 340 350
....*....|....*....|....*....|....
gi 1824665753 347 WFLLSSSNMAAPPSLNLFGEFSLLNSVISWSPYM 380
Cdd:MTH00062 328 VVFSFLSLCSFPPTIQFFCEVFLVSSSFGVLVYL 361
|
|
| PRK07363 |
PRK07363 |
NADH-quinone oxidoreductase subunit M; |
113-357 |
2.46e-17 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 180945 [Multi-domain] Cd Length: 501 Bit Score: 83.99 E-value: 2.46e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 113 YIFFESSLIPTMLLILGWGYQpERLQAGIYLIFYTLVASLPLL-----LVLFKVNSIF-----NTLYFPLlfdcgSFYFM 182
Cdd:PRK07363 133 FLFYELELIPFYLLIAIWGGE-KRGYASIKFLIYTAVSGLLVLaaflgIVWLSGSTSFdydaiSTQNLSL-----NTQLI 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 183 FYIFILLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMkiisfLGL---SFNYFWLSLSLFGGVI 259
Cdd:PRK07363 207 LLTGLLLGFGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFG-----LQLfpqTWSLVAPGLAIIGTIS 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 260 V---SFICIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGM 336
Cdd:PRK07363 282 ViygALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGL 361
|
250 260
....*....|....*....|.
gi 1824665753 337 INLMPTMSFWWFLLSSSNMAA 357
Cdd:PRK07363 362 MNPIRGLPLTSALLVLAGMAS 382
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
184-379 |
1.38e-16 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 81.94 E-value: 1.38e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 184 YIFILL---AFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLSLS------- 253
Cdd:PRK12667 223 GVALALalwAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFLYTIFGISPSLIDFRAALSpiliilg 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 254 LFGGVIVSFICIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLIN 333
Cdd:PRK12667 303 AVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDEL 382
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1824665753 334 SGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSVISWSPY 379
Cdd:PRK12667 383 AGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFY 428
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
186-375 |
1.59e-16 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 81.46 E-value: 1.59e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 186 FILLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVM----KIISFLGLSFNYFWLSLSLFGGVIVS 261
Cdd:PRK08375 207 FVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYftvfGGDFRFALGLGWLLAVLALLSMLVGS 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 262 FICIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGMINLMP 341
Cdd:PRK08375 287 LAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMP 366
|
170 180 190
....*....|....*....|....*....|....
gi 1824665753 342 TMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSVIS 375
Cdd:PRK08375 367 LTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVE 400
|
|
| PRK06458 |
PRK06458 |
hydrogenase 4 subunit F; Validated |
184-379 |
1.84e-16 |
|
hydrogenase 4 subunit F; Validated
Pssm-ID: 235805 [Multi-domain] Cd Length: 490 Bit Score: 81.13 E-value: 1.84e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 184 YIFILLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIIS-FLGLSF-NYFWLSLSLFGGVIVS 261
Cdd:PRK06458 217 FVFLLIGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDaAIGSDFpGRLLLIFGLLSVLVAA 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 262 FICIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGMINLMP 341
Cdd:PRK06458 297 FFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSP 376
|
170 180 190
....*....|....*....|....*....|....*....
gi 1824665753 342 TMSfWWFLLSSSNMAAPPSLNLF-GEFSLLNSVISWSPY 379
Cdd:PRK06458 377 LTG-WGLMLGALAIAGMPPFGVFiSEFLILTAGLARGPL 414
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
177-341 |
5.85e-13 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 70.80 E-value: 5.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 177 GSFYFMFYIFILLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGL-----------SF 245
Cdd:PRK08668 192 TGFALIVFLFLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFLLVLYVLPGTKLfsefgtyrgvpLF 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 246 NYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERL 325
Cdd:PRK08668 272 NYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIYRT 351
|
170
....*....|....*.
gi 1824665753 326 GSRSLLINSGMINLMP 341
Cdd:PRK08668 352 GTTKISEMGGLIEKMP 367
|
|
| PRK08676 |
PRK08676 |
hydrogenase membrane subunit; Validated |
178-399 |
6.80e-12 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 67.09 E-value: 6.80e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 178 SFYFMFYIFILLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKII--SFLGLSFNYFWLSLSLF 255
Cdd:PRK08676 203 SVLGASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIF 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 256 GGVIVSFICIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSG 335
Cdd:PRK08676 283 SIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRSDRFDRIFD 362
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1824665753 336 MINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSVISWSPYMFLLLIFLSFFSAVYTLYMY 399
Cdd:PRK08676 363 VFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLLAASSFAIFL 426
|
|
| PRK12662 |
PRK12662 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
185-375 |
7.78e-11 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 183662 [Multi-domain] Cd Length: 492 Bit Score: 63.98 E-value: 7.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 185 IFILLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKII-----SFLGLSFNYFWLSLSLFGGVI 259
Cdd:PRK12662 213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDVfkanfVFTTLPFNNVFMILAALAIVF 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 260 VSFICIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGMINL 339
Cdd:PRK12662 293 GSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLWKS 372
|
170 180 190
....*....|....*....|....*....|....*.
gi 1824665753 340 MPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSVIS 375
Cdd:PRK12662 373 MPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIK 408
|
|
| PRK08667 |
PRK08667 |
hydrogenase membrane subunit; Validated |
114-374 |
1.62e-10 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 236331 [Multi-domain] Cd Length: 644 Bit Score: 63.21 E-value: 1.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 114 IFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLL---VLFKVNSIFNtlYFPLLFDCGSFYFMFyIFILLA 190
Cdd:PRK08667 138 FFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLgiiVLFIQTGSFE--LSPLGASAGILSLVF-LLLFLG 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 191 FLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDL 270
Cdd:PRK08667 215 FGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGVLILLAGSISALLGVIYALKEHDL 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 271 KSLIAYSSIAHMSMV---IG--------GLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGMINL 339
Cdd:PRK08667 295 KGLLAYSSIENIGIIlmgIGlyvifgvyGLDTLALLALGGALFHSLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKL 374
|
250 260 270
....*....|....*....|....*....|....*
gi 1824665753 340 MPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSVI 374
Cdd:PRK08667 375 MPYTSALFLVGAVSIAALPPFNGFASELLLYESFF 409
|
|
| PRK07234 |
PRK07234 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
113-324 |
5.85e-10 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235978 [Multi-domain] Cd Length: 470 Bit Score: 61.12 E-value: 5.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 113 YIFFESSLIPTMLLIlGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVNSIFNTLYFPLLFDCGSFYFMFyifILLAFL 192
Cdd:PRK07234 120 YVALEVLSIATFLLV-AYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATADPEAFAL---IALGLL 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 193 VSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLSLSLFGgvivSFICIRQVDLKS 272
Cdd:PRK07234 196 VKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVRIFGVGTALLG----VLFALLEKDLKR 271
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1824665753 273 LIAYSSIAHMSMVIGGlmtmnwwGFMGSLsLMVGHGLCSSGLFCLSNIIYER 324
Cdd:PRK07234 272 MLAFSTISQLGFILAA-------PLVGGL-YALAHGLVKSTLFLCAGALPSR 315
|
|
| PRK12646 |
PRK12646 |
DUF4040 family protein; |
113-364 |
1.91e-09 |
|
DUF4040 family protein;
Pssm-ID: 183646 [Multi-domain] Cd Length: 800 Bit Score: 59.77 E-value: 1.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 113 YIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVNSIFNTLYFPLLF-------DCGSFYFMFYI 185
Cdd:PRK12646 136 YVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGFIMLYIMTGTNNITEILgqadhikNHGLFIPMIFM 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 186 FILLAFLVSmPMFLFHLWLPKAhVEAPISGSMIL-AGVLLKLGGYGIFRVMKIISfLGLSFNYFWLSLSLFGGVIVSFIC 264
Cdd:PRK12646 216 FLLGAFTKS-AQFPFHIWLPRA-MAAPTPVSAYLhSATMVKAGIFLLFRFTPLLG-LSNMYIYIVTFVGLITMLFGSITA 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 265 IRQVDLKSLIAYSSIAH----MSMV-IGGLMTMNWWGFMGSLSLMV---------GHGLCSSGLFCLSNIIYERLGSRSL 330
Cdd:PRK12646 293 LKQWDLKGILAYSTISQlgmiMAMVgIGGGYAQHQQDAIASIYVFVlfaalfhlmNHAIFKCALFMGVGIIDHEAGTRDI 372
|
250 260 270
....*....|....*....|....*....|....
gi 1824665753 331 LINSGMINLMPTMSFwWFLLSSSNMAAPPSLNLF 364
Cdd:PRK12646 373 RILSGMRQLFPKMNL-VMTIAALSMAGVPFLNGF 405
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
113-364 |
2.62e-09 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 58.96 E-value: 2.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 113 YIFFESSLIPTMLLILGWGYQPERLQAGIYlifYTLVASLPLLLVLFKVNSIF---NTLYFPLLFDCGSFYFMFYIFILL 189
Cdd:PRK08376 147 FVFLEIMSIASYALVAFRNDTWEAIEAGIK---YMFVGSLASSMVLLGIALLYgqyGTLNMAYLAVKMSENPTVVAKIAL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 190 AFLVSMPMFL-----FHLWLPKAHVEAPISGSMILagVLLKLGG-YGIFRVmkIISFLGLSFNYF---WL-----SLSLF 255
Cdd:PRK08376 224 ALFIAGLAMKsgavpVHMWLPDAYPAAPSSISAML--LVIKQAGlYALARV--LFSIYGPAINLAtvgWViiilgCLTMF 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 256 GGVIVSFIcirQVDLKSLIAYSSIAH---------MSMVIGGLMTMNWWGFM---GSLSLMVGHGLCSSGLFCLSNIIYE 323
Cdd:PRK08376 300 VGVAMAVV---QKDVKRLLAYHSVSQigymllglgVGLAALGDPAMASYGEIalaGGIYHIVNHALYKALLFLTAGAVIY 376
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1824665753 324 RLGSRSLLINSGMINLMPTMSFwWFLLSSSNMAAPPSLNLF 364
Cdd:PRK08376 377 ETGTRNLNELGGLARTMPKTTI-AFLIGAAAIVGLPPFNGF 416
|
|
| PRK06521 |
PRK06521 |
hydrogenase 4 subunit B; Validated |
197-364 |
5.16e-09 |
|
hydrogenase 4 subunit B; Validated
Pssm-ID: 235820 [Multi-domain] Cd Length: 667 Bit Score: 58.36 E-value: 5.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 197 MFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVmkIISFLG---LSFNYFWLSLSLFGGVIVSFICIRQVDLKSL 273
Cdd:PRK06521 226 LVPLHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRV--VFDLLGapgWWWGVLVLALGAISAVLGVLYALAEHDLKRL 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 274 IAYSSIAHM---SMVIG--------GLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGMINLMPT 342
Cdd:PRK06521 304 LAYSTIENIgiiFVGLGlamvfiayGMPLLAALALTAALYHLLNHALFKSLLFLGAGAVLHATGTRDMEKLGGLIRRMPW 383
|
170 180
....*....|....*....|..
gi 1824665753 343 MSfWWFLLSSSNMAAPPSLNLF 364
Cdd:PRK06521 384 TA-WAFLIGCLAISALPPLNGF 404
|
|
| Oxidored_q5_N |
pfam01059 |
NADH-ubiquinone oxidoreductase chain 4, amino terminus; |
1-80 |
8.69e-08 |
|
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
Pssm-ID: 366442 [Multi-domain] Cd Length: 110 Bit Score: 50.22 E-value: 8.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 1 MLKYLLMLCFLIPISLLESCWWL-----VHALMFLLSFIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITA 75
Cdd:pfam01059 1 MLKILLPTLMLIPLTFLSKPKWLwttstLYSLLLALLSLLLLNNPSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80
|
....*
gi 1824665753 76 SSSIY 80
Cdd:pfam01059 81 SQKHL 85
|
|
| PRK08377 |
PRK08377 |
NADH dehydrogenase subunit N; Validated |
187-370 |
2.55e-07 |
|
NADH dehydrogenase subunit N; Validated
Pssm-ID: 181406 [Multi-domain] Cd Length: 494 Bit Score: 52.85 E-value: 2.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 187 ILLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWL--SLSLFGGVIVSFIC 264
Cdd:PRK08377 212 LIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANGWSSVLKLviIMATLTVFFAELSA 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 265 IRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGMINLMPTMS 344
Cdd:PRK08377 292 LRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTA 371
|
170 180
....*....|....*....|....*.
gi 1824665753 345 FWWFLLSSSNMAAPPSLNLFGEFSLL 370
Cdd:PRK08377 372 LALTIGALSTVGIPLFNVFWSKFRII 397
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
189-361 |
4.42e-07 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 52.35 E-value: 4.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 189 LAFLVSMPMFL------FHLWLPKAHVEA-PIS-----GSMILAGVLLKLGGYGIFRVMKIisflglsFNYFWLSLSLFG 256
Cdd:PRK12650 210 VAVLIAVAAFTksaqfpFHFWLPEAMAAItPVSaflhaAAVVKAGIYLLLRFSPVFHDVAV-------WNWLLIIVGMIT 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 257 GVIVSFICIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGM 336
Cdd:PRK12650 283 ALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGSL 362
|
170 180
....*....|....*....|....*
gi 1824665753 337 INLMPtMSFWWFLLSSSNMAAPPSL 361
Cdd:PRK12650 363 WRRMP-FTFVSVTIAALSMAAVPPL 386
|
|
| PRK08042 |
PRK08042 |
formate hydrogenlyase subunit 3; Reviewed |
201-372 |
7.13e-07 |
|
formate hydrogenlyase subunit 3; Reviewed
Pssm-ID: 181206 [Multi-domain] Cd Length: 593 Bit Score: 51.37 E-value: 7.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 201 HLWLPKAHVEAPISGSMILAGVLLKLGGYGIFrvmkIISFLGLSFNYFWLSLSLFGGVIVSFI----CIRQVDLKSLIAY 276
Cdd:PRK08042 200 HGWVPQAHANASAPAAALFSTVVMKIGLLGIL----TLSLLGGNAPLWWGVALLVLGMITAFVgglyALMEHNIQRLLAY 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 277 SSIAHMSMVIGGL-----------MTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGMINLMPTMSF 345
Cdd:PRK08042 276 HTLENIGIILLGLgagvtgialeqPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISI 355
|
170 180
....*....|....*....|....*...
gi 1824665753 346 wWFLLSSSNMAAPPSLNLF-GEFSLLNS 372
Cdd:PRK08042 356 -AMLVGLMAMAALPPLNGFaGEWVIYQS 382
|
|
| PRK06589 |
PRK06589 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
59-373 |
2.61e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 46.35 E-value: 2.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 59 FMLILLSFWIVSLMITASSSIYLFSYHSSFFILLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLIlGWGYQPERLQ 138
Cdd:PRK06589 88 FLLLIGFLWICALLYTPKYLAINNIDSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLI-GHTRNNISLS 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 139 AGI-YLIFYTLVASLPLLLVLFKVNSIFNTLYFPllfDCGSFYFMFYIFILLAF---LVSMPMFLFHLWLPKAHVEAPIS 214
Cdd:PRK06589 167 GGYkYLKILMISALLLFLPAVILIYTKTGNLDFV---SGGLFSKNQSIILLLMFiygIAKTAIFPVHSWLPAAMVAHYPV 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 215 GSMILAGVLLKLGGYGIFRVMKIISFLG-----LSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSIAHMSMVIGGL 289
Cdd:PRK06589 244 SALLHAVIVVKTGLFCIYKILLYIFGLSylqriFAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSA 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 290 MTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSL 369
Cdd:PRK06589 324 FILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLI 403
|
....
gi 1824665753 370 LNSV 373
Cdd:PRK06589 404 LLAA 407
|
|
| PRK12663 |
PRK12663 |
Na+/H+ antiporter subunit D; |
113-359 |
1.89e-04 |
|
Na+/H+ antiporter subunit D;
Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 43.79 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 113 YIFFESSLIPTMLLILgWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVNSIFNTLYFPLL------FDCGSFYFMFYIF 186
Cdd:PRK12663 134 YVWFEVMLIASFVLIT-LGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIamrlndMGDTATLTTIALL 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 187 ILLAFLVSMPMFLFHlWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKII----SFLGLSFNYFWLSLSLFGGVIVSf 262
Cdd:PRK12663 213 FLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLfpqeRELLHPLLATMAAITMVIGALGA- 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 263 icIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGMINLMPT 342
Cdd:PRK12663 291 --LAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGLYRKEPL 368
|
250
....*....|....*..
gi 1824665753 343 MSFWWFLLSSSNMAAPP 359
Cdd:PRK12663 369 FGALFLILIFAIGGLPP 385
|
|
| PRK06525 |
PRK06525 |
hydrogenase 4 subunit D; Validated |
184-370 |
1.96e-04 |
|
hydrogenase 4 subunit D; Validated
Pssm-ID: 180606 [Multi-domain] Cd Length: 479 Bit Score: 43.42 E-value: 1.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 184 YIFILLAFLVSMPMFLFHLWLPKAhVEAPISGSMIL-AGVLLKLGGYGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSF 262
Cdd:PRK06525 210 FLGILFAAWGKSAQLPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 263 ICIRQVDLKSLIAYSSIAHMSMVIGGLMTM---NWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINSGMINL 339
Cdd:PRK06525 289 MYLPQQDMKRLLAYSTITQLGYMFFGLSLAilgSRLALEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKK 368
|
170 180 190
....*....|....*....|....*....|.
gi 1824665753 340 MPTMSFWWFLLSSSNMAAPPSLNLFGEFSLL 370
Cdd:PRK06525 369 LPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
|
|
| PRK12647 |
PRK12647 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
178-365 |
3.06e-04 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237156 [Multi-domain] Cd Length: 761 Bit Score: 43.37 E-value: 3.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 178 SFYFMFYIFILLAFLVSMPMFLFHLWLPKAhVEAPI-------SGSMILAGVLLklggygifrVMKIISFLGLSFNYFWL 250
Cdd:PRK12647 192 PLYLAILLLVLGGAFTKSAQFPFHFWLPNA-MEAPTpvsaylhSATMVKAGIYL---------LARLNPVLGGTPLWQTI 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 251 sLSLFGG---VIVSFICIRQVDLKSLIAYSSIahmsMVIGGLMTMNWWG----FMGSLSLMVGHGLCSSGLFCLSNIIYE 323
Cdd:PRK12647 262 -LPLFGGltmLTGALLAVRQTDLKLILAYSTV----SALGTLVMLLGLGselaIKAAVLFLVAHSLYKGALFMVAGIIDH 336
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1824665753 324 RLGSRSLLINSGMINLMPTMSFWWFLLSSSNMAAPPslnLFG 365
Cdd:PRK12647 337 ETGTRDITKLGGLRRAMPITAAAALLAALSMAGLPP---LFG 375
|
|
| PRK12649 |
PRK12649 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
113-364 |
3.38e-04 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 183649 [Multi-domain] Cd Length: 789 Bit Score: 43.28 E-value: 3.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 113 YIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVNSIFNTLYFPLLFDCGS---------FYFMF 183
Cdd:PRK12649 137 FIFWELTSITSFMLIGYWRHRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghpLFLIT 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 184 YIFILLAFLVSMPMFLFHLWLPKAhVEAPISGSMIL-AGVLLKLGGYGIFRVMKIISflGLSFNYFWLS-LSLFGGVIVS 261
Cdd:PRK12649 217 LILIFIGAAAKSAQGPFYIWLPNA-MEAPTPVSAFLhSATMVKAGVYLVARIHPIFS--GTEAWFILVSgTGMITMVLAG 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 262 FICIRQVDLKSLIAYSSIAHMSMviggLMTMNWW--------GFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLIN 333
Cdd:PRK12649 294 FLAFRQTDIKAILAYSTISQLAY----LMTMYGYttyhepglGVAAATFHLLNHATFKACLFLVAGIVAHEAATRDIRKL 369
|
250 260 270
....*....|....*....|....*....|.
gi 1824665753 334 SGMINLMPtMSFWWFLLSSSNMAAPPSLNLF 364
Cdd:PRK12649 370 GGLRKEMP-ITFIVASIAALAMAGIPPLNGF 399
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
185-315 |
8.76e-04 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 41.34 E-value: 8.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 185 IFILLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLlKLGGYGIFRVMKIISFLGLSF---NYFWLsLSLFGGVIVS 261
Cdd:PRK05777 208 VFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAP-KIAAFAVLLRLLVVAFGGLSEdwqQVLAI-IAIASMLVGN 285
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1824665753 262 FICIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLF 315
Cdd:PRK05777 286 LAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMTLGAF 339
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
167-315 |
1.76e-03 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 40.70 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 167 TLYFPLLFDCGSFYFMFYIFILLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMK-IISFLGLSF 245
Cdd:TIGR01770 189 LLFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLyILFGFSEAW 268
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 246 NYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLF 315
Cdd:TIGR01770 269 QIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMSLGAF 338
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
185-315 |
2.02e-03 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 40.48 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 185 IFILLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAGVLlKLGGYGIFrvMKIISFLGLSFNYFWLS-------LSLFGG 257
Cdd:COG1007 207 VLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAP-KIAAFAAL--LRLLVEAFPGLAADWQLllavlavLSMTVG 283
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1824665753 258 vivSFICIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLF 315
Cdd:COG1007 284 ---NLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMNLGAF 338
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
184-305 |
4.06e-03 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 39.46 E-value: 4.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 184 YIFILLAFLVSMPMFLFHLWLPKAHVEAPISGSMILAgVLLKLGGYGIFRVMKIISFLglsfnyfWLSLSLFGGVIVSFI 263
Cdd:MTH00198 302 YLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIA-IIPKFTVYILLTSLVITSKL-------LLSVAIISLVVGAFG 373
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1824665753 264 CIRQVDLKSLIAYSSIAHMSMVIGGLMTMNWWGFMGSLSLMV 305
Cdd:MTH00198 374 ALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAV 415
|
|
| PRK12648 |
PRK12648 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
185-364 |
4.66e-03 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237157 [Multi-domain] Cd Length: 948 Bit Score: 39.40 E-value: 4.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 185 IFILLAFLVSMPMFLFHLWLPKAhVEAPI-------SGSMILAGVLLklggygifrVMKIISFLGLSFNYFWL--SLSLF 255
Cdd:PRK12648 211 VLILLGAFTKSAQFPFHFWLPHA-MAAPTpvsaylhSATMVKAGVFL---------LARLWPVLAGTEEWFWIvgGAGLI 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665753 256 GGVIVSFICIRQVDLKSLIAYSSIAHMsmvigGLMTMnWWGFMGSLSL------MVGHGLCSSGLFCLSNIIYERLGSRS 329
Cdd:PRK12648 281 TLLLGAYFALFQHDLKGLLAYSTISHL-----GLITL-LLGLGSPLAAvaaifhIINHATFKASLFMAAGIIDHETGTRD 354
|
170 180 190
....*....|....*....|....*....|....*
gi 1824665753 330 LLINSGMINLMPtMSFWWFLLSSSNMAAPPSLNLF 364
Cdd:PRK12648 355 MRRLSGLRRLMP-ITATLAMVAAAAMAGVPLLNGF 388
|
|
| |
