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Conserved domains on  [gi|1824665715|ref|YP_009740588|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Spathosternum prasiniferum prasiniferum]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009622)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 5-310 9.99e-148

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177241  Cd Length: 306  Bit Score: 417.25  E-value: 9.99e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715   5 LLMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFSPVFN 84
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  85 LMISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILVG 164
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 165 SFNVMDFMVYQFYVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIVFMSMLL 244
Cdd:MTH00193  161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1824665715 245 TLFFLGGDFYSFMFFVKLAVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFVGFKIML 310
Cdd:MTH00193  241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 5-310 9.99e-148

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 417.25  E-value: 9.99e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715   5 LLMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFSPVFN 84
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  85 LMISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILVG 164
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 165 SFNVMDFMVYQFYVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIVFMSMLL 244
Cdd:MTH00193  161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1824665715 245 TLFFLGGDFYSFMFFVKLAVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFVGFKIML 310
Cdd:MTH00193  241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
NADHdh pfam00146
NADH dehydrogenase;
13-302 1.69e-95

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 284.37  E-value: 1.69e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  13 VLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFSPVFNLMISLIVW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  93 VIFPYLTYM--CSFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILVGSFNVMD 170
Cdd:pfam00146  83 AVIPFGPGLvlADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 171 FMVYQFYVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIVFMSMLLTLFFLG 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1824665715 251 G------DFYSFMFFVKLAVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIF 302
Cdd:pfam00146 243 GwlgpfpLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 4-311 9.36e-90

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 270.85  E-value: 9.36e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715   4 DLLMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFSPVF 83
Cdd:COG1005     7 PLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPIL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  84 NLMISLIVWVIFPYLTYMC--SFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLII 161
Cdd:COG1005    87 AFIPALLAFAVIPFGPGLVlaDLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVL 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 162 LVGSFNVMDFMVYQF-YVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIVFM 240
Cdd:COG1005   167 LAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLV 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 241 SMLLTLFFLGG--------DFYS----FMFFVKLAVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSLnFFIFFVGFKI 308
Cdd:COG1005   247 SALATTLFLGGwlgpfpilPLGGlpgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL-VNLVLTAAVV 325


                  ...
gi 1824665715 309 MLI 311
Cdd:COG1005   326 LLF 328
F420_dehyd_FpoH NF040610
F420H2 dehydrogenase subunit FpoH;
15-297 4.96e-45

F420H2 dehydrogenase subunit FpoH;


Pssm-ID: 468582  Cd Length: 339  Bit Score: 156.02  E-value: 4.96e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  15 LIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFSPVFNLMISLIVWVI 94
Cdd:NF040610   19 LIGAVFGGAMLAVWLERKLSADIQFRYGPNRVGPWGILQLVADAIKLFTKEDIIPRKADKLLYVSAPIVAMGSVFLMLVA 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  95 FP----------YLTYMCSFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILVG 164
Cdd:NF040610   99 IPfgaviingveYPLVVTNMDISILYIEAVSAISIIGIFMAGYSSNNKYSLLGAFRNFARMIGYEVPLGICVVSVAIMAG 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 165 SFNVMDFMVYQFYVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIVFMSMLL 244
Cdd:NF040610  179 SLNIVEIVEAQSPIWFAFLQPIGFIVFFIALMADMGRLPFDQNEAEEELIAGWITEYSGMRFGLGFFAEYIHLILGSFLV 258

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1824665715 245 TLFFLGG-------------DFYSFM--FFVKLAVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSL 297
Cdd:NF040610  259 VLLFLGGwnlpgfvtdipvlGIILPTlfFLMKVAIVLMFIIMIRWAVPRFRIDQVVDLSWKRLLPLSL 326
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 5-310 9.99e-148

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 417.25  E-value: 9.99e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715   5 LLMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFSPVFN 84
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  85 LMISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILVG 164
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 165 SFNVMDFMVYQFYVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIVFMSMLL 244
Cdd:MTH00193  161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1824665715 245 TLFFLGGDFYSFMFFVKLAVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFVGFKIML 310
Cdd:MTH00193  241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 6-308 9.79e-128

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 366.67  E-value: 9.79e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715   6 LMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFSPVFNL 85
Cdd:MTH00225    1 MSFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  86 MISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILVGS 165
Cdd:MTH00225   81 ILSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 166 FNVMDFMVYQFYVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIVFMSMLLT 245
Cdd:MTH00225  161 YNLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTS 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1824665715 246 LFFLGGDFY--SFMFFVKLAVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFVGFKI 308
Cdd:MTH00225  241 ILFFGGFFVtiDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLIILM 305
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 6-306 3.47e-117

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 339.92  E-value: 3.47e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715   6 LMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFSPVFNL 85
Cdd:MTH00143    1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  86 MISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILVGS 165
Cdd:MTH00143   81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 166 FNVMDFMVYQFYVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIVFMSMLLT 245
Cdd:MTH00143  161 FSFIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTV 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1824665715 246 LFFLGGDF-----YSFMFFVKLAVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFVGF 306
Cdd:MTH00143  241 VLFFGGSSvlfllGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILVLFVVL 306
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 5-312 9.44e-106

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 311.55  E-value: 9.44e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715   5 LLMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFSPVFN 84
Cdd:MTH00071    4 LISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  85 LMISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILVG 164
Cdd:MTH00071   84 LTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTG 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 165 SFNVMDFMVYQFYVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIVFMSMLL 244
Cdd:MTH00071  164 GFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLS 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1824665715 245 TLFFLGGDFYSFM-------FFVKLAVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFVGFKIMLIS 312
Cdd:MTH00071  244 TILFLGSTYNHLQpelstmnLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLG 318
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 5-313 4.51e-104

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 306.84  E-value: 4.51e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715   5 LLMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFSPVFN 84
Cdd:MTH00218    1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  85 LMISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILVG 164
Cdd:MTH00218   81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 165 SFNVMDFMVYQFYVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIVFMSMLL 244
Cdd:MTH00218  161 GFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1824665715 245 TLFFLGGDFYSFMFFVKLAVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFVGFKIMLISM 313
Cdd:MTH00218  241 VILFLGTSLTTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASL 309
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 7-312 1.21e-103

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 305.78  E-value: 1.21e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715   7 MFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFSPVFNLM 86
Cdd:MTH00104    1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  87 ISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILVGSF 166
Cdd:MTH00104   81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 167 NVMDFMVYQFYVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIVFMSMLLTL 246
Cdd:MTH00104  161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1824665715 247 FFLGG-------DFYSFMFFVKLAVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFVGFKIMLIS 312
Cdd:MTH00104  241 LFLGAfhnpympELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTAS 313
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 5-304 9.43e-103

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 303.20  E-value: 9.43e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715   5 LLMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFSPVFN 84
Cdd:MTH00195    1 WMISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  85 LMISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILVG 164
Cdd:MTH00195   81 LALALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 165 SFNVMDFMVYQFYVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIVFMSMLL 244
Cdd:MTH00195  161 SFDFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLT 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 245 TLFFLGGDfYSFMFFVKLAVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFV 304
Cdd:MTH00195  241 TILFLGGG-GTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLA 299
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 5-310 8.53e-102

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 301.43  E-value: 8.53e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715   5 LLMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFSPVFN 84
Cdd:MTH00111    4 LLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  85 LMISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILVG 164
Cdd:MTH00111   84 LLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSG 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 165 SFNVMDFMVYQFYVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIVFMSMLL 244
Cdd:MTH00111  164 GYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLT 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1824665715 245 TLFFL-------GGDFYSFMFFVKLAVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFVGFKIML 310
Cdd:MTH00111  244 TILFLnpstlnlPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISL 316
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-310 4.46e-99

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 294.59  E-value: 4.46e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715   1 MFYDLLMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFS 80
Cdd:MTH00134    1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  81 PVFNLMISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLI 160
Cdd:MTH00134   81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 161 ILVGSFNVMDFMVYQFYVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIVFM 240
Cdd:MTH00134  161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1824665715 241 SMLLTLFFLGGDFYSFM-------FFVKLAVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFVGFKIML 310
Cdd:MTH00134  241 NTLSAILFLGASHIPTLpelttinLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAF 317
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 3-310 3.34e-96

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 287.26  E-value: 3.34e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715   3 YDLLMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFSPV 82
Cdd:MTH00040    1 MSVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  83 FNLMISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIIL 162
Cdd:MTH00040   81 LFLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 163 VGSFNVMDFMVYQFYVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIVFMSM 242
Cdd:MTH00040  161 SGSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNL 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1824665715 243 LLTLFFLGGDFYSFMFF--------VKLAVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFVGFKIML 310
Cdd:MTH00040  241 LSVILFLGGGSPFNEIFpiniiivgIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLL 316
NADHdh pfam00146
NADH dehydrogenase;
13-302 1.69e-95

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 284.37  E-value: 1.69e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  13 VLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFSPVFNLMISLIVW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  93 VIFPYLTYM--CSFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILVGSFNVMD 170
Cdd:pfam00146  83 AVIPFGPGLvlADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 171 FMVYQFYVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIVFMSMLLTLFFLG 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1824665715 251 G------DFYSFMFFVKLAVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIF 302
Cdd:pfam00146 243 GwlgpfpLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 8-311 7.59e-93

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 278.20  E-value: 7.59e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715   8 FILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFSPVFNLMI 87
Cdd:MTH00010    5 FFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLIL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  88 SLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILVGSFN 167
Cdd:MTH00010   85 ALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFS 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 168 vMDFMVYQFYVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIVFMSMLLTLF 247
Cdd:MTH00010  165 -FSKIIMSQYSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVF 243

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1824665715 248 FLGGDFYSF----MFFVKLAVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFVGFKIMLI 311
Cdd:MTH00010  244 FTSFIPSIFisdlMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPIMFLLL 311
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 4-311 9.36e-90

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 270.85  E-value: 9.36e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715   4 DLLMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFSPVF 83
Cdd:COG1005     7 PLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPIL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  84 NLMISLIVWVIFPYLTYMC--SFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLII 161
Cdd:COG1005    87 AFIPALLAFAVIPFGPGLVlaDLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVL 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 162 LVGSFNVMDFMVYQF-YVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIVFM 240
Cdd:COG1005   167 LAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLV 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 241 SMLLTLFFLGG--------DFYS----FMFFVKLAVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSLnFFIFFVGFKI 308
Cdd:COG1005   247 SALATTLFLGGwlgpfpilPLGGlpgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL-VNLVLTAAVV 325


                  ...
gi 1824665715 309 MLI 311
Cdd:COG1005   326 LLF 328
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 5-308 9.37e-87

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 263.13  E-value: 9.37e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715   5 LLMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFSPVFN 84
Cdd:MTH00054    1 MGIIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  85 LMISLIVWVIFPYLT--YMCSFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIIL 162
Cdd:MTH00054   81 LTLAFIAWGVIPYGEgvVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLC 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 163 VGSFNVMDFMVYQFYVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIVFMSM 242
Cdd:MTH00054  161 VGSLNLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMST 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1824665715 243 LLTLFFLGGDFYSF----------MFFVKLAVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFVGFKI 308
Cdd:MTH00054  241 FGVILFLGGWLVISgptsyfsnfvWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILI 316
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 1-302 2.78e-85

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 259.28  E-value: 2.78e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715   1 MFYDLLMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFS 80
Cdd:MTH00216    1 MMVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  81 PVFNLMISLIVWVIFPYL--TYMCSFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLS 158
Cdd:MTH00216   81 PVLSFTLALIVWGVIPYErgVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIIS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 159 LIILVGSFNVMDFMVYQF-YVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSI 237
Cdd:MTH00216  161 VLLCVGSLSITEIVLAQNnGIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHI 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1824665715 238 VFMSMLLTLFFLGG--------DFYSFMFFVKLAVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIF 302
Cdd:MTH00216  241 ILMSCLTTILFLGGwlspikyfKGGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIF 313
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
5-297 7.19e-85

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 258.20  E-value: 7.19e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715   5 LLMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFSPVFN 84
Cdd:PRK06076    9 LLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  85 LMISLIVWVIFPYLTY--MCSFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIIL 162
Cdd:PRK06076   89 FIPAFLAWAVIPFGPElvIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLL 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 163 VGSFNVMDFMVYQFYVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIVFMSM 242
Cdd:PRK06076  169 AGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSA 248

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1824665715 243 LLTLFFLGG----------DFYSFMFFVKLAVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSL 297
Cdd:PRK06076  249 LITTLFLGGwlppfplgggIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSL 313
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 3-308 5.63e-72

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 226.05  E-value: 5.63e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715   3 YDLLMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFSPV 82
Cdd:MTH00029    4 YSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPI 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  83 FNLMISLIVWVI--FPYLTYMCSFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLI 160
Cdd:MTH00029   84 ISFTLAILAWAIvtMDQGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVI 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 161 ILVGSFNVMDFMVYQFYVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIVFM 240
Cdd:MTH00029  164 LCVGSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILM 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 241 SMLLTLFFLGG-----------------------DFYSFMFFVKLAVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSL 297
Cdd:MTH00029  244 SCMMTIFFLGGwlspldgiptppeafsifeqiasSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSL 323

                         330
                  ....*....|.
gi 1824665715 298 NFFIFFVGFKI 308
Cdd:MTH00029  324 GLVILTAGILI 334
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 11-308 3.66e-60

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 193.58  E-value: 3.66e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  11 NFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFSPVFNLMISLI 90
Cdd:MTH00090    1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  91 VWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILVGSFnvmd 170
Cdd:MTH00090   81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSF---- 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 171 FMVYQFYVWFIIITFPLFLscfaSCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIVFMSMLLTLFFLg 250
Cdd:MTH00090  157 SFVSSFSLSLFVIYLPFLI----MIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFF- 231

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1824665715 251 gDFYSFMFFvklaVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFVGFKI 308
Cdd:MTH00090  232 -KFSFLMLF----LIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVLFI 284
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 6-304 3.64e-48

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 162.79  E-value: 3.64e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715   6 LMFILNFVLLIICVLIsVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFSPVFNL 85
Cdd:MTH00058    2 FGLVSGLEGLLIILLL-VAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  86 MISLIVWVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILVGS 165
Cdd:MTH00058   81 LLVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 166 FNVMDFMVYQFYVWFIiitFPLFLSCFASC-LAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIVFMSMLL 244
Cdd:MTH00058  161 YSLVDFYYSGWLSVLL---FPLIYILWLVCiLCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLG 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 245 TLFFLGGDFYSFMFFVKLavisFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFV 304
Cdd:MTH00058  238 SVLFFGGGFVSIMLLFHL----LFFMWARATLPRVRYDYFVNFFWEYCLVLLILSLFVIV 293
F420_dehyd_FpoH NF040610
F420H2 dehydrogenase subunit FpoH;
15-297 4.96e-45

F420H2 dehydrogenase subunit FpoH;


Pssm-ID: 468582  Cd Length: 339  Bit Score: 156.02  E-value: 4.96e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  15 LIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFSPVFNLMISLIVWVI 94
Cdd:NF040610   19 LIGAVFGGAMLAVWLERKLSADIQFRYGPNRVGPWGILQLVADAIKLFTKEDIIPRKADKLLYVSAPIVAMGSVFLMLVA 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  95 FP----------YLTYMCSFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILVG 164
Cdd:NF040610   99 IPfgaviingveYPLVVTNMDISILYIEAVSAISIIGIFMAGYSSNNKYSLLGAFRNFARMIGYEVPLGICVVSVAIMAG 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 165 SFNVMDFMVYQFYVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTSIVFMSMLL 244
Cdd:NF040610  179 SLNIVEIVEAQSPIWFAFLQPIGFIVFFIALMADMGRLPFDQNEAEEELIAGWITEYSGMRFGLGFFAEYIHLILGSFLV 258

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1824665715 245 TLFFLGG-------------DFYSFM--FFVKLAVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSL 297
Cdd:NF040610  259 VLLFLGGwnlpgfvtdipvlGIILPTlfFLMKVAIVLMFIIMIRWAVPRFRIDQVVDLSWKRLLPLSL 326
ndhA CHL00032
NADH dehydrogenase subunit 1
 2-297 1.70e-33

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 126.22  E-value: 1.70e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715   2 FYDLLMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPNKVGFVGIPQPFSDAIKLVCKEQPIPIMSNYLLYYFSP 81
Cdd:CHL00032   23 VYGLIWILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGP 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  82 ---VFNLMISLIVwVIFPYLTYMCSFSYGFLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLS 158
Cdd:CHL00032  103 siaVISILLSYLV-IPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLS 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 159 LIILVGSFNVMDFM----VYQFYVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY 234
Cdd:CHL00032  182 ISLLSNSLSTVDIVeaqsKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASY 261

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 235 TSIVFMSMLLTLFFLGG-----------DFYS--------------FMFFVKLAVISFIFIWVRGTLPRFRYDKLMYLAW 289
Cdd:CHL00032  262 LNLLVSSLFVTVLYLGGwnlsipyifipELFEinktggvfgttigiFITLAKTYLFLFISITTRWTLPRLRMDQLLNLGW 341


                  ....*...
gi 1824665715 290 KSFLPLSL 297
Cdd:CHL00032  342 KFLLPISL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
6-304 4.40e-24

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 99.49  E-value: 4.40e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715   6 LMFILNFVLLIICVLISVAFLTLLERKVLGYIQIRKGPnkvgfvGIPQPFSDAIKLVCKEQPIPIMSNyLLYYFSPVFNL 85
Cdd:COG0650     1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETAS-WLFRAAPYVAL 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715  86 MISLIVWVIFPYLTYMCSFSYG--FLFFLCCTSLGVYTVMFAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILV 163
Cdd:COG0650    74 AAMLLAALLVPVLTTGPPLSFSgdLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLA 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 164 GSFNVMDFMVYQ---FYVWFIIITFPLFLSCFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEYTS-IVF 239
Cdd:COG0650   154 GSTSLSDIVAYQaahGPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKlFVL 233

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665715 240 MSMLLTLFFLGGDFYSFM-----FFVKLAVISFIFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNFFIFFV 304
Cdd:COG0650   234 LSLFVNLFLPWGIALTLLlalllFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLAVL 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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