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Conserved domains on  [gi|1824665697|ref|YP_009740558|]
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NADH dehydrogenase subunit 4 (mitochondrion) [Paratonkinacris vittifemoralis]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475934)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 3.62e-172

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 490.05  E-value: 3.62e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697   1 MLKYLLMIVFLTPLCLLSNSWWLIHSLMFLSSFIFMICIYSYCDLNMIGYFFGIDYFSFSLILLSFWICSLMIMASGSVF 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  81 FSSYHSNIFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFK 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 161 VYSYINTLYFPLLFDFGSYYFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIISF 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 241 LGLKFNYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 321 IYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLIGELSLLNSIMSWSSFSFLVLIFLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1824665697 401 YSQHGSYFTGVYTCSLGYLREYHLLFLHWFPLNILCLKSEYFFI 444
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 3.62e-172

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 490.05  E-value: 3.62e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697   1 MLKYLLMIVFLTPLCLLSNSWWLIHSLMFLSSFIFMICIYSYCDLNMIGYFFGIDYFSFSLILLSFWICSLMIMASGSVF 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  81 FSSYHSNIFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFK 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 161 VYSYINTLYFPLLFDFGSYYFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIISF 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 241 LGLKFNYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 321 IYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLIGELSLLNSIMSWSSFSFLVLIFLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1824665697 401 YSQHGSYFTGVYTCSLGYLREYHLLFLHWFPLNILCLKSEYFFI 444
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 48-399 4.71e-61

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 206.09  E-value: 4.71e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  48 IGYFFGIDYFSFSLILLSFWICSLMIMASGSVffSSYHSNIFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLI 127
Cdd:COG1008    74 ISYHLGVDGISLPLVLLTALLTPLAILASWNE--IKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLI 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 128 LGWGYqPERLQAGIYLIFYTLFASLPLLLVLFKVY--SYINTLYFPLL----FDFGSYYFMFYVFMIlAFLVKMPMFLVH 201
Cdd:COG1008   152 GIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYflAGALTFDIAELaaapLPLTAQLLLFLAFFI-AFAVKVPMFPFH 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 202 LWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMsiisfLGL------KFNYFWLSLSLSGGVIVSFICFRQVDLKSLIA 275
Cdd:COG1008   230 TWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFA-----LPLfpeasaYFAPLLAALGVIGIIYGALVALAQTDLKRLIA 304

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 276 YSSVAHMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNM 355
Cdd:COG1008   305 YSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASL 384

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1824665697 356 AAPPSLNLIGELSLLNSIMSWSSFSFLVLIFLSFFSAVYTLYMY 399
Cdd:COG1008   385 GLPGTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 106-388 2.28e-56

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 188.29  E-value: 2.28e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 106 SLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKVYSYINTLYFPLLFDF------GSY 179
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKAltgglnSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 180 YFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIISFLGLKFNYFWLSLSLSGGVI 259
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 260 VSFICFRQVDLKSLIAYSSVAHMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLS-NIIYERLGSRSLLINKGMIN 338
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1824665697 339 LMPSMALWWFLLSSSNMAAPPSLNLIGELSLLNSIMSWSSFSFLVLIFLS 388
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 48-399 4.01e-52

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 182.06  E-value: 4.01e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  48 IGYFFGIDYFSFSLILLSFWICSLMIMASGSVFFSSyhSNIFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLI 127
Cdd:TIGR01972  69 ISYHLGVDGISLLLVLLTALLTLLAILASWESIQKR--VKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLI 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 128 LGWGyQPERLQAGIYLIFYTLFASLpLLLVLFKVYSYINTLYFPLL------FDFGSYYFMFYVFMIlAFLVKMPMFLVH 201
Cdd:TIGR01972 147 GVWG-GPNRIYAAMKFFLYTLAGSL-LMLLAILGLYFLGGGTFDLLellnlpLPFGVQTWLFLAFFI-AFAVKVPLFPLH 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 202 LWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MSIISFLGLKFNYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSSVA 280
Cdd:TIGR01972 224 TWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFnLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSIS 303

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 281 HMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPS 360
Cdd:TIGR01972 304 HMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGT 383

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1824665697 361 LNLIGELSLLNSIMSWSSFSFLVLIFLSFFSAVYTLYMY 399
Cdd:TIGR01972 384 SGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 3.62e-172

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 490.05  E-value: 3.62e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697   1 MLKYLLMIVFLTPLCLLSNSWWLIHSLMFLSSFIFMICIYSYCDLNMIGYFFGIDYFSFSLILLSFWICSLMIMASGSVF 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  81 FSSYHSNIFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFK 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 161 VYSYINTLYFPLLFDFGSYYFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIISF 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 241 LGLKFNYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 321 IYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLIGELSLLNSIMSWSSFSFLVLIFLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1824665697 401 YSQHGSYFTGVYTCSLGYLREYHLLFLHWFPLNILCLKSEYFFI 444
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 47-443 1.93e-125

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 369.94  E-value: 1.93e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  47 MIGYFFGIDYFSFSLILLSFWICSLMIMASGSVFFSSYHSNIFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLL 126
Cdd:MTH00150   15 SLSELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSSFSLLVLLLCLILVLAFSVSSLLMFYFFFEASLIPTLLL 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 127 ILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKVYSYINTLYFPLLFDFGSYYFM---FYVFMILAFLVKMPMFLVHLW 203
Cdd:MTH00150   95 ILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLISSLRKLLSSmglWGLLVFLAFLVKLPMYPFHLW 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 204 LPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIISFLGLKFNYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSSVAHMS 283
Cdd:MTH00150  175 LPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMS 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 284 MVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNL 363
Cdd:MTH00150  255 LVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNL 334

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 364 IGELSLLNSIMSWSSFSFLVLIFLSFFSAVYTLYMYSYSQHGSYFTGVYTCSLGYLREYHLLFLHWFPLNILCLKSEYFF 443
Cdd:MTH00150  335 LSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILKSDLLF 414
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-440 3.04e-124

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 368.30  E-value: 3.04e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697   1 MLKYLLMIVFLTPLCLLSNSWWL---IHSLMFLSSFIFMICIYSYCDLNMIGYFFGIDYFSFSLILLSFWICSLMIMASG 77
Cdd:MTH00014    1 MLKLIMPLISLLLLPLIKYPWSWaltFSTLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILASF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  78 SVFFSSYHSNIFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLV 157
Cdd:MTH00014   81 KIFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 158 LFKVYSYINTLYFPLL-FDFGSYYF--MFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV 234
Cdd:MTH00014  161 ILLIFYTNNSLSMLMSsMEPPSIYLmnLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 235 MSIISFLGLKFNYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGL 314
Cdd:MTH00014  241 SSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSSAL 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 315 FCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLIGELSLLNSIMSWSSFSFLVLIFLSFFSAVY 394
Cdd:MTH00014  321 FALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITSFLAAAY 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*.
gi 1824665697 395 TLYMYSYSQHGSYFTGVYTCSLGYLREYHLLFLHWFPLNILCLKSE 440
Cdd:MTH00014  401 SLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPD 446
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-440 4.93e-120

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 357.58  E-value: 4.93e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697   1 MLKYLLMIVFLTPLCLLSNswwliHSLMFLSSFIFMICI---------YSYCDLNMIGYFFGIDYFSFSLILLSFWICSL 71
Cdd:MTH00124    1 MLKIILPTIMLIPTTLLSK-----PKFLWTNTTTYSLLIallslqwlkPPYYPTKNLTQWLGIDQISAPLLVLSCWLLPL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  72 MIMASGSVFFSSYHSN--IFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLF 149
Cdd:MTH00124   76 MILASQNHLQHEPLQRkrTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLI 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 150 ASLPLLLVLFKVYSYINTLYFPLLFDFGSY------YFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVL 223
Cdd:MTH00124  156 SSLPLLIAILYLHNQTGTLSLPMLQLTHPTltnswtNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAIL 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 224 LKLGGYGIFRVMSIISFLGLKFNYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLLTMNWWGCMGSLSL 303
Cdd:MTH00124  236 LKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMIL 315

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 304 MIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLIGELSLLNSIMSWSSFSFLV 383
Cdd:MTH00124  316 MIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIIL 395

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1824665697 384 LIFLSFFSAVYTLYMYSYSQHGSYFTGVYTCSLGYLREYHLLFLHWFPLNILCLKSE 440
Cdd:MTH00124  396 TGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPE 452
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-444 1.66e-119

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 356.21  E-value: 1.66e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697   1 MLKYLLMIVFLTPLCLLSNSWWLIHSLMFLSSFIFMICIYS-YCDLNMIGYFFGIDYFSFSLILLSFWICSLMIMASGSV 79
Cdd:MTH00205    1 MSIFGVFSLLIILFVLKFKDWSFFSNLLLIGLFFSSFFFSNsFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  80 FFSSYHSNIFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLF 159
Cdd:MTH00205   81 FKSNKNSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 160 KVYSYINTLYFPLLFDFGSYYFMFYVFMI---LAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMS 236
Cdd:MTH00205  161 FLNSLNFSLSMFFNFPLNFSDFYLFLYWIflmLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 237 IISFLGLKFNYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFC 316
Cdd:MTH00205  241 MLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 317 LSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLIGELSLLNSIMSWSSFSFLVLIFLSFFSAVYTL 396
Cdd:MTH00205  321 LANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSL 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*...
gi 1824665697 397 YMYSYSQHGSYFTGVYTCSLGYLREYHLLFLHWFPLNILCLKSEYFFI 444
Cdd:MTH00205  401 YLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFIC 448
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-443 4.56e-114

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 342.28  E-value: 4.56e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697   1 MLKYLLMIVFLTPLCLLSNSWWLIHSLMFLSSFIFMICI----YSYCDLNMIGYFFGIDYFSFSLILLSFWICSLMIMAS 76
Cdd:MTH00068    1 MLKIIIPTLMLLPTTWLSPKKWLWTLTTTNSLIIAFLSLmwfnLPSETMNFTNKYFGIDQISSPLLILTCWLLPLMILAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  77 GSVF--FSSYHSNIFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPL 154
Cdd:MTH00068   81 QNHLknEPINRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 155 LLVLFKVYSYINTLYFPLLFDFGSYYFM------FYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGG 228
Cdd:MTH00068  161 LIALLILQNSLGSLSLILLELMSPMQLMtytnkiWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 229 YGIFRVMSIISFLGLKFNYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLLTMNWWGCMGSLSLMIGHG 308
Cdd:MTH00068  241 YGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHG 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 309 LCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLIGELSLLNSIMSWSSFSFLVLIFLS 388
Cdd:MTH00068  321 LTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGT 400

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1824665697 389 FFSAVYTLYMYSYSQHGSYFTGVYTCSLGYLREYHLLFLHWFPLNILCLKSEYFF 443
Cdd:MTH00068  401 LITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELIS 455
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 1-444 4.97e-111

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 334.64  E-value: 4.97e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697   1 MLKYLLMIVFLTPLCLLSNSWWLIHSLMFLSSFIFMICIY-----SYCDLNMIGYFFGIDYFSFSLILLSFWICSLMIMA 75
Cdd:MTH00044    1 MITLILLSLGIAITSWIVPKNKLWPISISQSSLISLLSLFllnnhWSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  76 SGSV--FFSSYHSNIFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLP 153
Cdd:MTH00044   81 SINHlsNNSPNNQRTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 154 LLLVLFKVYSYINTLYFPLLF------DFGSYYFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00044  161 LLISLIAIYSSSSSLSIPLSElnwltsLSSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 228 GYGIFRVMSIISFLGLKF-NYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLLTMNWWGCMGSLSLMIG 306
Cdd:MTH00044  241 GYGLIRLINLFSLPSANNiSFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 307 HGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLIGELSLLNSIMSWSSFSFLVLIF 386
Cdd:MTH00044  321 HGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGL 400

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1824665697 387 LSFFSAVYTLYMYSYSQHGSYFTGVYTCSLGYLREYHLLFLHWFPLNILCLKSEYFFI 444
Cdd:MTH00044  401 ATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIIINPNIILI 458
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-437 2.91e-108

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 327.62  E-value: 2.91e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697   1 MLKYLLMIVFLTPLCLLSNSWWL-----IHSLMFlsSFIFMICIYSYCD--LNMIGYFFgIDYFSFSLILLSFWICSLMI 73
Cdd:MTH00110    1 MLKIIIPTIMLIPLTWLSKNNMIwinttTYSLLI--SLISLLLLNQPNDnsLNFSLLFF-SDSLSTPLLILTTWLLPLML 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  74 MASGSVFF--SSYHSNIFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFAS 151
Cdd:MTH00110   78 MASQHHLSkePLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGS 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 152 LPLLLVLFKVYSYINTLYFPL-------LFDFGSYYFMFYVFMiLAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLL 224
Cdd:MTH00110  158 LPLLVALLYIQNNLGSLNFLLlqlwaqpLPNSWSNNLLWLACM-MAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 225 KLGGYGIFRVMSIISFLGLKFNYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLLTMNWWGCMGSLSLM 304
Cdd:MTH00110  237 KLGGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALM 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 305 IGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLIGELSLLNSIMSWSSFSFLVL 384
Cdd:MTH00110  317 IAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILM 396

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1824665697 385 IFLSFFSAVYTLYMYSYSQHGSYFTGVYTCSLGYLREYHLLFLHWFPLNILCL 437
Cdd:MTH00110  397 GLNMLITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSL 449
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 5-432 1.22e-101

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 310.33  E-value: 1.22e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697   5 LLMIVFLTPLCLLSNSWWLIHSLMFLSSFIFMICIYSYCDLNMIG--YFFGIDYFSFSLILLSFWICSLMIMASGS--VF 80
Cdd:MTH00206    6 LIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFsnLYLSYDPLSSPLVILSCWLLPLMFLASQNhmKN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  81 FSSYHSNIFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFK 160
Cdd:MTH00206   86 EPINRQRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALLF 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 161 VYSYINTLYFPLL---FDFGSYYFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSI 237
Cdd:MTH00206  166 LQNSLGSLSLYILyfsKLTTWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILI 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 238 ISFLGLKFNYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCL 317
Cdd:MTH00206  246 LGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCL 325

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 318 SNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLIGELSLLNSIMSWSSFSFLVLIFLSFFSAVYTLY 397
Cdd:MTH00206  326 ANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSLY 405

                         410       420       430
                  ....*....|....*....|....*....|....*
gi 1824665697 398 MYSYSQHGSYFTGVYTCSLGYLREYHLLFLHWFPL 432
Cdd:MTH00206  406 MFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPV 440
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 1-440 6.92e-91

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 283.00  E-value: 6.92e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697   1 MLKYLLMIVFLTPLCLLSNSWWL-----IHSLMFLSSFIFMICIYSYCDLNMIGYFFGIDYFSFSLILLSFWICSLMIMA 75
Cdd:MTH00127    1 MLKILIPTLMLIPTTWLTPAKWLwtttlAHSLLIALASLTWLKNLSETGWSSLNLYMATDPLSTPLLVLTCWLLPLMILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  76 SGSVFFSSYHSN--IFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLP 153
Cdd:MTH00127   81 SQNHTAPEPINRqrMYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 154 LLLVLFKVYSYINTL------YFPLLFDFGSYYFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00127  161 LLVALLLLQNSTGTLsmltlqYSQPLQLSSWADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 228 GYGIFRVMSIISFLGLKFNYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLLTMNWWGCMGSLSLMIGH 307
Cdd:MTH00127  241 GYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAH 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 308 GLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLIGELSLLNSIMSWSSFSFLVLIFL 387
Cdd:MTH00127  321 GLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLG 400

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1824665697 388 SFFSAVYTLYMYSYSQHGSYFTGVYTCSLGYLREYHLLFLHWFPLNILCLKSE 440
Cdd:MTH00127  401 TLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPE 453
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 48-399 4.71e-61

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 206.09  E-value: 4.71e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  48 IGYFFGIDYFSFSLILLSFWICSLMIMASGSVffSSYHSNIFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLI 127
Cdd:COG1008    74 ISYHLGVDGISLPLVLLTALLTPLAILASWNE--IKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLI 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 128 LGWGYqPERLQAGIYLIFYTLFASLPLLLVLFKVY--SYINTLYFPLL----FDFGSYYFMFYVFMIlAFLVKMPMFLVH 201
Cdd:COG1008   152 GIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYflAGALTFDIAELaaapLPLTAQLLLFLAFFI-AFAVKVPMFPFH 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 202 LWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMsiisfLGL------KFNYFWLSLSLSGGVIVSFICFRQVDLKSLIA 275
Cdd:COG1008   230 TWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFA-----LPLfpeasaYFAPLLAALGVIGIIYGALVALAQTDLKRLIA 304

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 276 YSSVAHMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNM 355
Cdd:COG1008   305 YSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASL 384

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1824665697 356 AAPPSLNLIGELSLLNSIMSWSSFSFLVLIFLSFFSAVYTLYMY 399
Cdd:COG1008   385 GLPGTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 106-388 2.28e-56

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 188.29  E-value: 2.28e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 106 SLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKVYSYINTLYFPLLFDF------GSY 179
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKAltgglnSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 180 YFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIISFLGLKFNYFWLSLSLSGGVI 259
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 260 VSFICFRQVDLKSLIAYSSVAHMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLS-NIIYERLGSRSLLINKGMIN 338
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1824665697 339 LMPSMALWWFLLSSSNMAAPPSLNLIGELSLLNSIMSWSSFSFLVLIFLS 388
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 48-399 7.60e-56

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 192.34  E-value: 7.60e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  48 IGYFFGIDYFSFSLILLSFWICSLMIMASGSVFFSSYHSniFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLI 127
Cdd:PRK05846   74 ISYHLGVDGISLLLVVLTALLTPLAVLASWEEIKKRVKF--YMAALLWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLI 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 128 LGWGYqPERLQAGIYLIFYTLFASLPLLLVLFKVYSYI-----NTLYFPLL---FDFGSYYFMFYVFMIlAFLVKMPMFL 199
Cdd:PRK05846  152 GVWGG-KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVYynatgTFDIADLLnlpLPPGVQYWLFLAFFI-AFAVKMPMFP 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 200 VHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMsiisfLGL------KFNYFWLSLSLSGGVIVSFICFRQVDLKSL 273
Cdd:PRK05846  230 LHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFS-----LPLfpdashEFAPIIITLGVIAIIYGALVALAQTDIKKL 304

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 274 IAYSSVAHMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSS 353
Cdd:PRK05846  305 IAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMA 384

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1824665697 354 NMAAPPSLNLIGE-LSLLNSIMSWSSFSFLVLIFLsFFSAVYTLYMY 399
Cdd:PRK05846  385 SLGLPGTSGFVGEfLILLGSFQVNPVIAFIATTGL-ILAAVYSLWLY 430
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 53-399 1.22e-52

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 183.73  E-value: 1.22e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  53 GIDYFSFSLILLSFWICSLMIMASGSVFFSSyhsniFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLILGWGY 132
Cdd:MTH00204   83 GVSLFFILLTTLLIPICILISWKSIKFLFKE-----FLLCLLFLEVLLIGVFSVLDLLLFYILFEGILIPMFLLIGIWGS 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 133 QPERLQAGIYLIFYTLFASLPLLLVLFKVYSYINTL-YFPLLFDFGSYYFMFYVFM--ILAFLVKMPMFLVHLWLPKAHV 209
Cdd:MTH00204  158 REEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTdYQILLNIKLPLSIQKWLLVgfFLSLAVKIPQIPFHIWLPQAHV 237

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 210 EAPISGSMILAGVLLKLGGYGIFRV-MSIISFLGLKFNYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGG 288
Cdd:MTH00204  238 EAPVAGSVILAGILLKLGGYGFLRFsWPLFPAASEYFAPLIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLG 317

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 289 LLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLIGELS 368
Cdd:MTH00204  318 LFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFF 397

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1824665697 369 LLNSIMSWSSFSFLVLIFLSFFSAVYTLYMY 399
Cdd:MTH00204  398 SLLAAFEYSLGLGVLVTSGMVWSAAYSLYLY 428
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 89-399 3.04e-52

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 182.56  E-value: 3.04e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  89 FIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKVYSYINTL 168
Cdd:MTH00217  111 FLLCLLVIEILLMGVFTILDLVGFYILFEGILIPMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTT 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 169 YFPLL----FDFGSYYFMFYVFMiLAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MSIISFLGL 243
Cdd:MTH00217  191 DYQALcclkIEKELQYFIFLGFF-LSLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFsWPLLPEASE 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 244 KFNYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYE 323
Cdd:MTH00217  270 YFSPLIQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYE 349

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1824665697 324 RLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLIGELSllnSIMSWSSFSFLVLIFLSF---FSAVYTLYMY 399
Cdd:MTH00217  350 RHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEFL---SLLAAFEYSYIVGVLASLgmvLSAGYSIYLY 425
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 48-399 4.01e-52

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 182.06  E-value: 4.01e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  48 IGYFFGIDYFSFSLILLSFWICSLMIMASGSVFFSSyhSNIFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLI 127
Cdd:TIGR01972  69 ISYHLGVDGISLLLVLLTALLTLLAILASWESIQKR--VKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLI 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 128 LGWGyQPERLQAGIYLIFYTLFASLpLLLVLFKVYSYINTLYFPLL------FDFGSYYFMFYVFMIlAFLVKMPMFLVH 201
Cdd:TIGR01972 147 GVWG-GPNRIYAAMKFFLYTLAGSL-LMLLAILGLYFLGGGTFDLLellnlpLPFGVQTWLFLAFFI-AFAVKVPLFPLH 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 202 LWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MSIISFLGLKFNYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSSVA 280
Cdd:TIGR01972 224 TWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFnLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSIS 303

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 281 HMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPS 360
Cdd:TIGR01972 304 HMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGT 383

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1824665697 361 LNLIGELSLLNSIMSWSSFSFLVLIFLSFFSAVYTLYMY 399
Cdd:TIGR01972 384 SGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 52-397 1.18e-45

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 165.48  E-value: 1.18e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  52 FGIDYFSFSLILLSFWICSLMIMASGSVFfsSYHSNIFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLILGWG 131
Cdd:MTH00226   98 FAVDGISIYFIILTGFIVPCSILISWHSV--KYLTKSFLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGIWG 175

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 132 YQPERLQAGIYLIFYTLFASLPLLLVLFKVYSYINTLYFPLLFDF-----GSYYFMFYVFMILAFLVKMPMFLVHLWLPK 206
Cdd:MTH00226  176 SREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTLASCshvvsEQTQKWIFLGIFLAMAVKIPIFPFHIWLPK 255

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 207 AHVEAPISGSMILAGVLLKLGGYGIFRVMSIISFLGLK-FNYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMV 285
Cdd:MTH00226  256 AHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGAQnLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLV 335

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 286 IGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLIG 365
Cdd:MTH00226  336 SITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIG 415

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1824665697 366 ELSLLNSIMSWSSFSFLVLIFLSFFSAVYTLY 397
Cdd:MTH00226  416 EYLSILSSFNWNPIIGVFVCSGVILSAVYSFY 447
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 26-418 4.58e-45

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 161.61  E-value: 4.58e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  26 SLMFLSSFIFMICIYSYCDLNMIGYFFGIDYFSFSLILLsfwicsLMIMASGSVFFSSYHSNIFIFMVLFLLIMLCCsFA 105
Cdd:MTH00094    8 SPFLFFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVLLIF------MMVFILGLVLLSEKNFNLLILSNLLILICLLF-FV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 106 SLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKVYSYINTLYFPLLFDfgsyyFMFYV 185
Cdd:MTH00094   81 SSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLKNFFFFSLCYFDFFLS-----WEMFF 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 186 FMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIISFLglkFNYFWLSLSLSGGVIVSFICF 265
Cdd:MTH00094  156 ILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGSLNFV---YNNFWIIFSLLGMILSSFCCV 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 266 RQVDLKSLIAYSSVAHMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMAL 345
Cdd:MTH00094  233 FQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGL 312

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1824665697 346 WWFLLSSSNMAAPPSLNLIGELSLLNSIMSWSSFSFLVLIFLSFFSAVYTLYMYSYSQHGSYFTGVYTCSLGY 418
Cdd:MTH00094  313 IFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVGL 385
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 53-393 2.43e-35

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 136.70  E-value: 2.43e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  53 GIDYFSFSLILLSFWICSLMIMASGSVffsSYHSNIFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLILGWGY 132
Cdd:PRK12561   56 GVDGLSMPLVLLSGLITTLSIFASWKV---TRKPRLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLLISIWGG 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 133 QpERLQAGIYLIFYTLFASLPLLLVLFKVYSYINTLYFPL----LFDF-GSYYFMFYVFMILAFLVKMPMFLVHLWLPKA 207
Cdd:PRK12561  133 Q-KRLYAATKFILYTALASIFILVAGLALALSGDTFTFDLaelgAKSYpLALELLLYAGFLIAFGVKLPIFPLHTWLPDA 211

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 208 HVEAPISGSMILAGVLLKLGGYGIFRV-MSIISFLGLKFNYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVI 286
Cdd:PRK12561  212 HGEASAPVSMILAGVLLKMGGYALIRFnVQMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVL 291

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 287 GGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMP-SMALwwFLLSS-SNMAAPPSLNLI 364
Cdd:PRK12561  292 LGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPkTFAL--FTASSmASLALPGMSGFV 369

                         330       340
                  ....*....|....*....|....*....
gi 1824665697 365 GELSLLNSIMSWSSFSFLVLIFLSFFSAV 393
Cdd:PRK12561  370 SELTVFLGITSSDVYSSTFRTITILLAAV 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 48-403 2.15e-32

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 127.57  E-value: 2.15e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  48 IGYFFGIDYFSFSLILLSFWICSLMIMASGSVFFSSYHSNIFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLI 127
Cdd:COG0651    68 FGIVLVADRLSALFLLLTALVALAVLLYSIGYMRHERRGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLV 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 128 LGWGYqPERLQAGIYLIFYTLFASLPLLLVLFKVYSYINTLYFPLLFDFGSYY-----FMFYVFMILAFLVKMPMFLVHL 202
Cdd:COG0651   148 ALGGT-KEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELdpgllLAAFALLLVGFGIKAALFPLHF 226

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSII--SFLGLKFNYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSSVA 280
Cdd:COG0651   227 WLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLfgADPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVS 306

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 281 HMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPS 360
Cdd:COG0651   307 QIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPL 386

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1824665697 361 LNLIGELSLLNSIMSWSSFSFLVLIFL-SFFSAVYTLYMYSYSQ 403
Cdd:COG0651   387 SGFVSKWLLLQAALEAGAWLLAAVLLLsSLLTLAYFVRIFGRAQ 430
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 53-393 1.41e-29

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 120.58  E-value: 1.41e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  53 GIDYFSFSLILLSFWICSLMIMASGSVffsSYHSNIFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLILGWGY 132
Cdd:PRK02546   84 GADGLSMPLILLTGFITTLAVLAAWPV---TFKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGG 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 133 QpERLQAGIYLIFYTLFASLPLLLVLFKVYSYINTLYFPL----LFDFG-SYYFMFYVFMILAFLVKMPMFLVHLWLPKA 207
Cdd:PRK02546  161 K-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMtalaAKDFGlGFQLLCYAGLLIAYGVKLPIVPLHTWLPDA 239

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 208 HVEAPISGSMILAGVLLKLGGYGIFRV-MSIISFLGLKFNYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVI 286
Cdd:PRK02546  240 HGEATAPVHMLLAGILLKMGGYALLRMnAGMLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVL 319

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 287 GGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLIGE 366
Cdd:PRK02546  320 IGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMSGFVAE 399

                         330       340
                  ....*....|....*....|....*..
gi 1824665697 367 LSLLNSIMSWSSFSFLVLIFLSFFSAV 393
Cdd:PRK02546  400 LMVFVGFATSDAYTLPFRVVVVFLAAV 426
ndhD CHL00011
NADH dehydrogenase subunit 4
 52-393 1.33e-27

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 114.66  E-value: 1.33e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  52 FGIDYFSFSLILLSFWICSLMIMASGSVffsSYHSNIFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLILGWG 131
Cdd:CHL00011   80 LGIDGLSIGPILLTGFITTLATLAAWPV---TRNSRLFYFLMLAMYSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWG 156

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 132 YQpERLQAGIYLIFYTLFASLPLLLVLFKVYSY---INTLYFPLLFDfGSYYF----MFYVFMILAFLVKMPMFLVHLWL 204
Cdd:CHL00011  157 GK-KRLYSATKFILYTAGGSIFLLIGVLGMGLYgsnEPTLNFETLAN-QSYPValeiLFYIGFLIAYAVKLPIIPLHTWL 234

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 205 PKAHVEAPISGSMILAGVLLKLGGYGIFRV-MSIISFLGLKFNYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSSVAHMS 283
Cdd:CHL00011  235 PDTHGEAHYSTCMLLAGILLKMGAYGLIRInMELLPHAHSIFSPWLVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMG 314

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 284 MVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNL 363
Cdd:CHL00011  315 FIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGF 394

                         330       340       350
                  ....*....|....*....|....*....|
gi 1824665697 364 IGELSLLNSIMSWSSFSFLVLIFLSFFSAV 393
Cdd:CHL00011  395 VAELIVFFGIITSQKYLLMPKILITFVMAI 424
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
50-338 9.16e-24

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 103.63  E-value: 9.16e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  50 YFFGIDYFSFSLILLSFWICSLMIMASGSvffSSYHSNIFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLILG 129
Cdd:PRK06473   73 YHLGVDGLSLPLLVLNSLLTLIAIYSSDE---SIQRPRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAI 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 130 WGYQpERLQAGIYLIFYTLFASLPLLLVLFKV----------YSYINTLYFPLlfdfgSYYFMFYVFMILAFLVKMPMFL 199
Cdd:PRK06473  150 WGGQ-RRGYAATKFLLYTAISGILILVSFLGLvwlsgassfdYEPLRSHTLPL-----STQLLLLAPILVGFGIKIPLVP 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 200 VHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIISFLGLKFNYFWLSLSLSGGVIVSFIC-FRQVDLKSLIAYSS 278
Cdd:PRK06473  224 FHTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLATWAVVSVLYGASCaIAQKDMKKMVAYSS 303

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 279 VAHMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMIN 338
Cdd:PRK06473  304 IGHMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLLN 363
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 47-401 9.33e-22

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 97.26  E-value: 9.33e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  47 MIGYFFGIDYFSFSLILLSFwicslmIMASGSVFFS----SYHSNIFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVP 122
Cdd:PRK08375   68 GIGIELRADSLSALFLLVTS------ILAIAALLYAigygEHRQTRFYALFLLLLAGLLGALLTADLFNLFVFLEIMSLS 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 123 TLLLIlGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKVYSYINTLYFPLL---FDFGSYYFMFYVFMILAFLVKMPMFL 199
Cdd:PRK08375  142 SYALV-AMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLagaLAENPTVVTAFGFVLLALALKAAVFP 220

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 200 VHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIISFLGLKFNYFWLS----LSLSGGVIVSFICFRQVDLKSLIA 275
Cdd:PRK08375  221 LHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFTVFGGDFRFALGLGWllavLALLSMLVGSLAALGQDDVKRVLA 300

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 276 YSSVAHMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNM 355
Cdd:PRK08375  301 YSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLI 380

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1824665697 356 AAPPSLNLIGELSLLNSIMSWSSFSFLVLIFL-SFFSAVYTLYMYSY 401
Cdd:PRK08375  381 GVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLAsSLLALLYFLRIWYR 427
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
 16-393 3.48e-21

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 94.99  E-value: 3.48e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  16 LLSNSWWLIHSLMFLSSFIFMICI--YSYCDLNMIGYFFGIDYFSFSLILLSfwicsLMIMASGSVFFSSYHSNIFIFMV 93
Cdd:MTH00062    3 FFSVGFFLGFLLLLLFCLLYSSGVgcCILVVNNVFNGLFIFDSLSFYLILLV-----LFLGLYSQVMFYNLLSGVSRFFL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  94 LFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKVYSYINTLYFPLL 173
Cdd:MTH00062   78 FLSLIFSILCFCVNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSDW 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 174 FDFGSYYFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIISFLGLkfnYFWLSLS 253
Cdd:MTH00062  158 GSDDSVSLIVYYVLSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIFSGSF---LGYLFLC 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 254 LSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLIN 333
Cdd:MTH00062  235 CLFSVFFLITACSELDGKRWLAFLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLL 314

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 334 KGMINLMPSMALWWFLLSSSNMAAPPSLNLIGELSLLNSIMSWSSFSFLVLIFLSFFSAV 393
Cdd:MTH00062  315 KSGINGSLVLRVIVVFSFLSLCSFPPTIQFFCEVFLVSSSFGVLVYLLFWCFYLFFGGLV 374
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
50-394 9.70e-20

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 91.31  E-value: 9.70e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  50 YFFGIDYFSFSLILLSfwiCSLMIMASGSVFFSSYHSNIFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLILG 129
Cdd:PRK07363   73 YSLGVDGLSLPLLVLN---SLLTWIAIYSIGENTERPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLIAI 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 130 WGYQpERLQAGIYLIFYTLFASLPLLLVLFKV----------YSYINTLYFPLlfdfgSYYFMFYVFMILAFLVKMPMFL 199
Cdd:PRK07363  150 WGGE-KRGYASIKFLIYTAVSGLLVLAAFLGIvwlsgstsfdYDAISTQNLSL-----NTQLILLTGLLLGFGIKIPLVP 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 200 VHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRvmsiisfLGLK-FNYFWL----SLSLSGGVIV---SFICFRQVDLK 271
Cdd:PRK07363  224 LHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLR-------FGLQlFPQTWSlvapGLAIIGTISViygALSAIAQKDIK 296

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 272 SLIAYSSVAHMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLS 351
Cdd:PRK07363  297 RMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPIRGLPLTSALLV 376

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1824665697 352 SSNMAA---PPSLNLIGELSLLNSIMSWSSFSFLVLIFLSFFSAVY 394
Cdd:PRK07363  377 LAGMASagiPGLVGFVAEFIVFQGSFSTFPIPTLLCIVASGLTAVY 422
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 144-398 1.48e-16

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 81.56  E-value: 1.48e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 144 IFYTLFASLPLLLVLFKVYSYINTLYFPLLFDFGSYYFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVL 223
Cdd:PRK12667  186 FLYATFGTLNMADLSAKIRGLSFPLTGGLAGNPPLALGVALALALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLV 265

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 224 LKLGGYGIFRVMSIISFLGLKFNYFWLSLS-------LSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLLTMNWWG 296
Cdd:PRK12667  266 VNVGAYAIIRFLYTIFGISPSLIDFRAALSpiliilgAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLG 345

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 297 CMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLIGELSLLNSIMSw 376
Cdd:PRK12667  346 LAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLE- 424

                         250       260
                  ....*....|....*....|..
gi 1824665697 377 SSFSFLVLIFLsFFSAVYTLYM 398
Cdd:PRK12667  425 SGFYLPALVLL-IASAISLVGY 445
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 184-393 3.85e-16

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 80.36  E-value: 3.85e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 184 YVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIIS-FLGLKF-NYFWLSLSLSGGVIVS 261
Cdd:PRK06458  217 FVFLLIGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDaAIGSDFpGRLLLIFGLLSVLVAA 296

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 262 FICFRQVDLKSLIAYSSVAHMSMV-----IGGLLtmnwwGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGM 336
Cdd:PRK06458  297 FFLLRQRDIKRLFAYSSIEHMGLIafalgIGGPL-----GIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGL 371

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1824665697 337 INLMPSMAlWWFLLSSSNMA-APPSLNLIGELSLLNSIMS---WSSFSFLVLIFLSFFSAV 393
Cdd:PRK06458  372 LKVSPLTG-WGLMLGALAIAgMPPFGVFISEFLILTAGLArgpLLIAILLLLLLTLAFAAL 431
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 56-341 3.96e-15

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 77.34  E-value: 3.96e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  56 YFSFSLILLSFWICSLMIMASGSVFFSSYHSNIFIFMVLFLLIMLCCS---FASLSLLSFYIFFEASLVPTLLLILgWGY 132
Cdd:PRK08668   64 TFTLTHLSWFFAMISLLVIFSVAFFMVSEKTKNDAYFNMFALMSLAGVlgvFLANDLLTLYIFWEIMTFSSFMMVP-MGK 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 133 QPERLQAGIYLIFYTLFASLpLLLVLFKVYSYINTLYFP-----LLFDFGSYYFMFYVFMILAF-LVKMPMFLVHLWLPK 206
Cdd:PRK08668  143 KESRKASLKYFVLSAIGAYA-MLYAIFLIYAKTGTFDFAdisqgLINDTSTGFALIVFLFLLAFgVAKAGIFPLHVWAPD 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 207 AHVEAPISGSMILAGVLLKLGGYGIFRVMSIISFLGL-----------KFNYFWLSLSLSGGVIVSFICFRQVDLKSLIA 275
Cdd:PRK08668  222 AYSEAPQSFSAVLSGQLSKLGAYGFLLVLYVLPGTKLfsefgtyrgvpLFNYILAWLGNISIIVGTLMAILQEDIKKLIA 301

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1824665697 276 YSSVAHMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMP 341
Cdd:PRK08668  302 YSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIYRTGTTKISEMGGLIEKMP 367
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 91-387 1.20e-13

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 72.84  E-value: 1.20e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  91 FMVLFLLIMLCCsFASLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKVYSYINTLYF 170
Cdd:PRK08667  116 LTALFILSMLGV-VASANTFSFLFFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFEL 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 171 PLLFDFGSYYFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIISFLGLKFNYFWL 250
Cdd:PRK08667  195 SPLGASAGILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGVLIL 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 251 SLSLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLLTMNWWGCMGSLSLM-----------IGHGLCSSGLFCLSN 319
Cdd:PRK08667  275 LAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVYGLDTLAllalggalfhsLNHALFKSLLFLTAG 354

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1824665697 320 IIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLIGELSLLNS-IMSWSSFSFLVLIFL 387
Cdd:PRK08667  355 SVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYESfFQSFSVADPLIKILL 423
PRK12646 PRK12646
DUF4040 family protein;
80-398 8.26e-12

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 67.47  E-value: 8.26e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  80 FFSSYHSNI---FIFMVLFLLIMLCCSFASLSLLsFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLL 156
Cdd:PRK12646  101 YLSSRKDNLprfYFYLTLFMFSMIGIVLSDNTIL-MYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLV 179

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 157 VLFKVYSYINTLYFPLLFD-----FGSYYFMFYVFMIL--AFlVKMPMFLVHLWLPKAhVEAPISGSMIL-AGVLLKLGG 228
Cdd:PRK12646  180 GFIMLYIMTGTNNITEILGqadhiKNHGLFIPMIFMFLlgAF-TKSAQFPFHIWLPRA-MAAPTPVSAYLhSATMVKAGI 257

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 229 YGIFRVMSIISfLGLKFNYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSSVAH----MSMV-IGGLLTMNWWGCMGSLSL 303
Cdd:PRK12646  258 FLLFRFTPLLG-LSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQlgmiMAMVgIGGGYAQHQQDAIASIYV 336

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 304 MI---------GHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALwWFLLSSSNMAAPPSLN--LIGELSL--L 370
Cdd:PRK12646  337 FVlfaalfhlmNHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNL-VMTIAALSMAGVPFLNgfLSKEMFLdaL 415

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1824665697 371 NSIMSWSSFSFLVLIFL-------SFFSAVYTLYM 398
Cdd:PRK12646  416 TQTGQLSQFSLISMIIIvfigviaSIFTFTYALYM 450
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-103 1.69e-11

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 60.62  E-value: 1.69e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697   1 MLKYLLMIVFLTPLCLLSNSWWLIHSLMFLSSFIFMICI-----YSYCDLNMIGYFFGIDYFSFSLILLSFWICSLMIMA 75
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWLWTTSTLYSLLLALLSLlllnnPSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 1824665697  76 SGSVFFSS--YHSNIFIFMVLFLLIMLCCS 103
Cdd:pfam01059  81 SQKHLKSEpnNRQRTFIFLLILLQLFLILT 110
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 88-399 1.70e-11

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 65.93  E-value: 1.70e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  88 IFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLILGWGYQpERLQAGIYLIFYT------LFASLPLLLVLFKV 161
Cdd:PRK08676  103 VFYLGFNLLLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSAR-ENIDAALKYIFIAstamifAFIGLIFLFSLTRQ 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 162 YSYINTLYFPLLFDFGSYY-----FMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMS 236
Cdd:PRK08676  182 ALGTGTLNWTELAAHASLLspsvlGASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSA 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 237 II--SFLGLKFNYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGL 314
Cdd:PRK08676  262 LLrqSGAAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGL 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 315 FCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLIGELSLLNSIMSWSSFSFLVLIFLSFFSAVY 394
Cdd:PRK08676  342 FFSAGILHRQYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLLAASS 421


                  ....*
gi 1824665697 395 TLYMY 399
Cdd:PRK08676  422 FAIFL 426
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 104-324 1.92e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 65.74  E-value: 1.92e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 104 FASLSLLSFYIFFEASLVPTLLLIlGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKVYSYINTLYFPLLFDFGSYYFmf 183
Cdd:PRK07234  111 FVCADLISLYVALEVLSIATFLLV-AYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATADPEAF-- 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 184 yVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIISFLGLKFNYFWLSLSLSGgvivSFI 263
Cdd:PRK07234  188 -ALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVRIFGVGTALLG----VLF 262

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1824665697 264 CFRQVDLKSLIAYSSVAHMSMVIGGLLTmnwwgcmGSLsLMIGHGLCSSGLFCLSNIIYER 324
Cdd:PRK07234  263 ALLEKDLKRMLAFSTISQLGFILAAPLV-------GGL-YALAHGLVKSTLFLCAGALPSR 315
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 88-370 1.99e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 65.76  E-value: 1.99e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  88 IFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLiLGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKVYSYINT 167
Cdd:PRK12665  112 IFLPTYLILVAGVSNAFLAGDLFNLYVGFEILLVASYVL-LTLGATAARVRAGVTYVMVSMVSSLLFLIGIALVYAATGT 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 168 LYFPLL------FDFGSYYFMFYVFMIlAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIIsFL 241
Cdd:PRK12665  191 LNMADLavrldeLPSGTRTALFAVLLV-AFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLL-FP 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 242 GLKFNYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNII 321
Cdd:PRK12665  269 GGGLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLI 348

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1824665697 322 YERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLIGELSLL 370
Cdd:PRK12665  349 ERQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALL 397
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 186-395 6.64e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 63.98  E-value: 6.64e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 186 FMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSII-----SFLGLKFNYFWLSLSLSGGVIV 260
Cdd:PRK12662  214 FIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDVfkanfVFTTLPFNNVFMILAALAIVFG 293

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 261 SFICFRQVDLKSLIAYSSVAHMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLM 340
Cdd:PRK12662  294 SVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLWKSM 373

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1824665697 341 PSMALWWFLLSSSNMAAPPSLNLIGELSLLNSIMSWSSF-SFLVLIFLSFFSAVYT 395
Cdd:PRK12662  374 PKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWiGLVVLLVGSGLSVIYV 429
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 109-398 2.12e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 56.26  E-value: 2.12e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 109 LLSFYIFFEASLVPTLLLILGWGYQPERLQAGI-YLIFYTLFASLPLLLV--LFKVYSYINTLYFPLLFDFGSYYF--MF 183
Cdd:PRK08376  143 LFNFFVFLEIMSIASYALVAFRNDTWEAIEAGIkYMFVGSLASSMVLLGIalLYGQYGTLNMAYLAVKMSENPTVVakIA 222

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 184 YVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILagVLLKLGG-YGIFRVMsiisflglkFNYFWLSLSLS--GGVIV 260
Cdd:PRK08376  223 LALFIAGLAMKSGAVPVHMWLPDAYPAAPSSISAML--LVIKQAGlYALARVL---------FSIYGPAINLAtvGWVII 291

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 261 SFICFR----------QVDLKSLIAYSSVAH---------MSMVIGGLLTMNWWGCM---GSLSLMIGHGLCSSGLFCLS 318
Cdd:PRK08376  292 ILGCLTmfvgvamavvQKDVKRLLAYHSVSQigymllglgVGLAALGDPAMASYGEIalaGGIYHIVNHALYKALLFLTA 371

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 319 NIIYERLGSRSLLINKGMINLMPsMALWWFLLSSSNMAAPPSLN------LIGELS-LLNSIMSWSSFSFLVLIFLSFFS 391
Cdd:PRK08376  372 GAVIYETGTRNLNELGGLARTMP-KTTIAFLIGAAAIVGLPPFNgfaskwLIYESSaLFNPILGVIAMIGSVLTLASFVK 450


                  ....*..
gi 1824665697 392 AVYTLYM 398
Cdd:PRK08376  451 VFHTAFF 457
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 59-396 6.40e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 54.82  E-value: 6.40e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  59 FSLILLSFWICSLMIMASGSVFFSSYHSNIFIFmvLFLLIMLCCSFASLS--LLSFYIFFEASLVPTLLLIlGWGYQPER 136
Cdd:PRK06589   88 FLLLIGFLWICALLYTPKYLAINNIDSSSRFLF--FFNLTILIGVLIALSsdLFTMFVCYELLTISTAFLI-GHTRNNIS 164

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 137 LQAGIYLIFYTLFASLPLLL-VLFKVYSYINTLYFPLLFDFGSYYFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISG 215
Cdd:PRK06589  165 LSGGYKYLKILMISALLLFLpAVILIYTKTGNLDFVSGGLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVS 244

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 216 SMILAGVLLKLGGYGIFRVMSIISFLGLKFNYFWLSLSLSGGVIV-----SFICFRQVDLKSLIAYSSVAHMSMVIGGLL 290
Cdd:PRK06589  245 ALLHAVIVVKTGLFCIYKILLYIFGLSYLQRIFAEFNWLIFIPIVsifysSLKALKTDNIKKILAYSTISQLSLALLSAF 324

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 291 TMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLIGELSLL 370
Cdd:PRK06589  325 ILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLIL 404

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1824665697 371 -----NSIMSWSSFSFLVLIFLSFFSAVYTL 396
Cdd:PRK06589  405 laaseQNQPWLSIIVMLVVIASSILSALYLL 435
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 187-362 8.28e-08

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 54.51  E-value: 8.28e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 187 MILAFL---VKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVmsIISFLGLKfNYFW--LSLSLSGGVIVS 261
Cdd:PRK06521  213 FLLALFgfgAKAGLVPLHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRV--VFDLLGAP-GWWWgvLVLALGAISAVL 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 262 FICFR--QVDLKSLIAYSSVAHMSMVIGGL-LTM----NWWGCMGSLSLM------IGHGLCSSGLFCLSNIIYERLGSR 328
Cdd:PRK06521  290 GVLYAlaEHDLKRLLAYSTIENIGIIFVGLgLAMvfiaYGMPLLAALALTaalyhlLNHALFKSLLFLGAGAVLHATGTR 369

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1824665697 329 SLLINKGMINLMPSMAlWWFLLSSSNMAAPPSLN 362
Cdd:PRK06521  370 DMEKLGGLIRRMPWTA-WAFLIGCLAISALPPLN 402
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 49-397 1.65e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 53.41  E-value: 1.65e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  49 GYFFGIDYFSFSLILLSFWICSLMIMASGSVFFSSYHSNIFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLIL 128
Cdd:PRK07691   70 GIVFVADMFAALLVLTSSIITFLVILYSFQTIGIERERYYYYPSVLFMLAGVNGAFLTGDIFNLFVFFEVMLMASYVLIV 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 129 GWGYQPErLQAGIYLIFYTLFASLPLLLVLFKVYSYINTLYFPLLF---------DFGSYYFMFYVFMILaFLVKMPMFL 199
Cdd:PRK07691  150 IGGTKIQ-LRESIKYVLINVVSSAFFVVAVAILYSVVGTLNMADISvkiaelsagQTGLITVVAILFLFV-FATKAGLFP 227

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 200 VHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIISFLGLKF-NYFWLSLSLSGGVIVSFICFRQVDLKSLIAYSS 278
Cdd:PRK07691  228 LYFWLPGSYYAPPIAIAALFGALLTKVGVYAIARTFTLFFSHDTSFtHYLILILALLTIIFGVIGAVAYFDIKKIIIYNI 307

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 279 VAHMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMAlWWFLLSSSNMAAP 358
Cdd:PRK07691  308 MIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLG-WMFFIAALSLAGI 386

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1824665697 359 PSLNliGELSLLNSIMSWSSFSFLVLIFLSFFSAVYTLY 397
Cdd:PRK07691  387 PPLS--GFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLY 423
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 187-359 3.15e-07

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 52.46  E-value: 3.15e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 187 MILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIISFLGLKFNYFWLSLSLSGGVIV--SFIC 264
Cdd:PRK08377  212 LIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANGWSSVLKLVIIMATLTVFfaELSA 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 265 FRQVDLKSLIAYSSVAHMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMA 344
Cdd:PRK08377  292 LRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTA 371

                         170
                  ....*....|....*
gi 1824665697 345 LWWFLLSSSNMAAPP 359
Cdd:PRK08377  372 LALTIGALSTVGIPL 386
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
52-396 7.30e-06

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 48.02  E-value: 7.30e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  52 FGIDYFSFSLILLSFWICSLMIMASGSVFFS----SYHSNIFIFMVLFLLIMLCCSFASLSLLSFYIFFEASLVPTLLLI 127
Cdd:PRK12663   69 FGIQFTGDSLSALMVTTASFVATAIMAYGFGdiehSGRRYGFPPFILLLMAGVIGSFLTGDLFNLYVWFEVMLIASFVLI 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 128 LgWGYQPERLQAGIYLIFYTLFASLPLLLVLFKVYSYINTLYFPLL------FDFGSYYFMFYVFMILAFLVKMPMFLVH 201
Cdd:PRK12663  149 T-LGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIamrlndMGDTATLTTIALLFLLAFGMKAALFPFM 227

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 202 lWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSII----SFLGLKFNYFWLSLSLSGGVIVSFIcfrQVDLKSLIAYS 277
Cdd:PRK12663  228 -WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLfpqeRELLHPLLATMAAITMVIGALGALA---YKDIRRIAGYQ 303

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 278 SVAHMSMVIGGLLTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAA 357
Cdd:PRK12663  304 VISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGL 383

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1824665697 358 PPSLNLIGELSLLNSIMSWSSFSFLVLIFLSFFSAVYTL 396
Cdd:PRK12663  384 PPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSL 422
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 200-362 1.12e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 44.43  E-value: 1.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 200 VHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFrvmsIISFLGLKFNYFWLSLSLSGGVIVSFI----CFRQVDLKSLIA 275
Cdd:PRK08042  199 LHGWVPQAHANASAPAAALFSTVVMKIGLLGIL----TLSLLGGNAPLWWGVALLVLGMITAFVgglyALMEHNIQRLLA 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 276 YSSVAHMSMVIGGL-----------LTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMA 344
Cdd:PRK08042  275 YHTLENIGIILLGLgagvtgialeqPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVIS 354

                         170
                  ....*....|....*...
gi 1824665697 345 LwWFLLSSSNMAAPPSLN 362
Cdd:PRK08042  355 I-AMLVGLMAMAALPPLN 371
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 91-359 1.50e-04

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 43.81  E-value: 1.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697  91 FMVLFLLIMLCCSFASlSLLSFYIFFEASLVPTLLLIlGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKVYSYINTLYF 170
Cdd:PRK06525  118 FLLLFIGAMAGLVYSS-TLLGLLLFFEITGLCSWALI-SYYQSPKALRSALKALLITHIGSLGLYLAAATLFLQTGTFAL 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 171 PLLFDF-GSYYFMFYVFMILAFLVKMPMFLVHLWLPKAhVEAPISGSMIL-AGVLLKLGGYGIFRVMSIISFLGLKFNYF 248
Cdd:PRK06525  196 SALSGLhGSLKYLVFLGILFAAWGKSAQLPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARAIQSMGPIPHVIGYV 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 249 WLSLSLSGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLLTM---NWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERL 325
Cdd:PRK06525  275 GAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAilgSRLALEGSIAYIFNHAFAKSLFFLVAGALSYSC 354

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1824665697 326 GSRSLLINKGMINLMPSMALWWFLLSSSNMAAPP 359
Cdd:PRK06525  355 GTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPP 388
PRK12650 PRK12650
DUF4040 family protein;
185-374 6.71e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 42.34  E-value: 6.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 185 VFMILAFLVKMPMFLVHLWLPKAHVEA-PIS-----GSMILAGVLLKLGGYGIFRVMSIisflglkFNYFWLSLSLSGGV 258
Cdd:PRK12650  212 VLIAVAAFTKSAQFPFHFWLPEAMAAItPVSaflhaAAVVKAGIYLLLRFSPVFHDVAV-------WNWLLIIVGMITAL 284

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665697 259 IVSFICFRQVDLKSLIAYSSVAHMsmviGGLLTMNWWGCMGSLSLMI----GHGLCSSGLFCLSNIIYERLGSRSLLINK 334
Cdd:PRK12650  285 MGAVFAVQKTDLKKLTAYSTVSQL----GWIVATIGVGTPFALTAAVvhtlAHALFKSSLFMLIGVVDHQAGTRDIRRLG 360

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1824665697 335 GMINLMPsMALWWFLLSSSNMAA-PPSLNLIGELSLLNSIM 374
Cdd:PRK12650  361 SLWRRMP-FTFVSVTIAALSMAAvPPLFGFVSKEGMLTAFL 400
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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