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Conserved domains on  [gi|1824664448|ref|YP_009738990|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Koreoleptoxis nodifila]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009590)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-163 2.05e-32

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214437  Cd Length: 163  Bit Score: 113.83  E-value: 2.05e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664448   1 MSASIILSLALCSVFLFPLMAQPLSLGLSIMLSTMFLCILIAMYLSSWYGYILFLIYVGGLLVMFAYVAALSPNILFSGM 80
Cdd:MTH00152    1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGSN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664448  81 GPFLFFLSTQTLVPIMVFNSIFLDTNNLSFLAGQLELTSSMKILGSELASPSLISILVGLGIILLINLVVVVKICYYQHS 160
Cdd:MTH00152   81 FKFVFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVVKICYYEEG 160


                  ...
gi 1824664448 161 TLR 163
Cdd:MTH00152  161 SLR 163
 
Name Accession Description Interval E-value
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-163 2.05e-32

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 113.83  E-value: 2.05e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664448   1 MSASIILSLALCSVFLFPLMAQPLSLGLSIMLSTMFLCILIAMYLSSWYGYILFLIYVGGLLVMFAYVAALSPNILFSGM 80
Cdd:MTH00152    1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGSN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664448  81 GPFLFFLSTQTLVPIMVFNSIFLDTNNLSFLAGQLELTSSMKILGSELASPSLISILVGLGIILLINLVVVVKICYYQHS 160
Cdd:MTH00152   81 FKFVFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVVKICYYEEG 160


                  ...
gi 1824664448 161 TLR 163
Cdd:MTH00152  161 SLR 163
 
Name Accession Description Interval E-value
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-163 2.05e-32

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 113.83  E-value: 2.05e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664448   1 MSASIILSLALCSVFLFPLMAQPLSLGLSIMLSTMFLCILIAMYLSSWYGYILFLIYVGGLLVMFAYVAALSPNILFSGM 80
Cdd:MTH00152    1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGSN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664448  81 GPFLFFLSTQTLVPIMVFNSIFLDTNNLSFLAGQLELTSSMKILGSELASPSLISILVGLGIILLINLVVVVKICYYQHS 160
Cdd:MTH00152   81 FKFVFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVVKICYYEEG 160


                  ...
gi 1824664448 161 TLR 163
Cdd:MTH00152  161 SLR 163
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-165 9.08e-24

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 91.61  E-value: 9.08e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664448   1 MSASIILSLALCSVFLFPLMAQPLSLGLSIMLSTMFLCILIAMYLSSWYGYILFLIYVGGLLVMFAYVAALSPNILFSGM 80
Cdd:MTH00212    1 MLLSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLIITMESNSWYGYILFLIYIGGLLVLFGYMVALSPNEHLFFK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664448  81 gPFLFFLSTQTLVPIMVFNSIFLDTNNLSFlagqlELTSSMKILGSELASPSLISILVGLGIILLINLVVVVKICYYQHS 160
Cdd:MTH00212   81 -KYFKGFGMILISLNLYLLLMTLGSSNFSP-----MLNLKLELNVSKILSNNNIPILLFLGLILLIALLMVVKICQYYKG 154


                  ....*
gi 1824664448 161 TLRPY 165
Cdd:MTH00212  155 PLRPF 159
ND6 MTH00015
NADH dehydrogenase subunit 6; Validated
 1-166 2.67e-13

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 164590  Cd Length: 155  Bit Score: 64.11  E-value: 2.67e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664448   1 MSASIILSLALCSVFLFPLMAQPLSLGLSIMLSTMFLCILIAMYLSSWYGYILFLIYVGGLLVMFAYVAALSPNILFSgm 80
Cdd:MTH00015    1 MSLSFFLILMISLTCSLFLATTPITLGINILMMALLLATTMASALSSWFAFLTFLIYVGGMLVMFAYFLALTPNQQLN-- 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664448  81 gpfLFFLSTQTLVPIMVFNSIFLDTNNLSFLAGQLELTSSMkilgseLASPSLISILVGLGIILLINLVVVVKICYYQHS 160
Cdd:MTH00015   79 ---LGPMAKYTLITLLTLSTTLKLTNPPSPSFFSSTQGNTF------LYQPENAPLLIFLALILLLTMVIVVKLTRRSSG 149


                  ....*.
gi 1824664448 161 TLRPYK 166
Cdd:MTH00015  150 PLRPFK 155
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 4-166 8.74e-10

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 54.81  E-value: 8.74e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664448   4 SIILSLALCSVFLFPLMAQPLSLGLSIMLSTMFLCILIAMYLSS-WYGYILFLIYVGGLLVMFAYVAALSPNILFSGMGP 82
Cdd:MTH00166    2 MMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSfWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLK 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664448  83 FLFFLSTQTLVPIMVFNSIFLDTNNLSFLAGQLELTSSMKILGSELASPSLISIlvglgIILLINLVVVVKICYYQHSTL 162
Cdd:MTH00166   82 LLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMI-----IYLLLTLIVVVKITNIFKGPL 156


                  ....
gi 1824664448 163 RPYK 166
Cdd:MTH00166  157 RSKN 160
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 23-155 1.95e-05

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 43.05  E-value: 1.95e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664448  23 PLSLGLSIMLSTMFLCILIAMYLSSWYGYILFLIYVGGLLVMFAYVAALSPNILFSGMGPFLFFLST-QTLVPIMVFNSI 101
Cdd:MTH00214   25 PYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPESWGGWSVLLFFlFYLLGLGFVGFY 104

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1824664448 102 FLDTNNLSFLAGQLELTSSMKILGSELASPSLISILVGlGIILLINLVVVVKIC 155
Cdd:MTH00214  105 FYGGWEMLSWMGVDEANNLDLSGVSDLYSRGFFLLLLG-GVVLFLVLFVVLELV 157
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 28-156 1.26e-04

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 40.66  E-value: 1.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824664448  28 LSIMLSTMFLCILIAMYLSSWYGYILFLIYVGGLLVMFAYVAALSPN--ILFSGMGPFLFflstqtLVPIMVFNSIFLDT 105
Cdd:MTH00045   28 LGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAEryPSVSNLGEVLV------LSLLLSLWVFISFD 101

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1824664448 106 NNLSFLAGQLELTSSMKILGSELASPSLISILVGLGIILLINLVVVVKICY 156
Cdd:MTH00045  102 NFLELSNNNWSLVSLSDLVGSSELYNSGGLYLLLGGFILLVALVVALVISF 152
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 38-72 7.75e-04

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 38.20  E-value: 7.75e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1824664448  38 CILIAMYLSSWYGYILFLIYVGGLLVMFAYVAALS 72
Cdd:MTH00138   40 CGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALA 74
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 27-72 7.83e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 35.49  E-value: 7.83e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1824664448  27 GLSIMLSTMFLCILIAMYLSSWYGYILFLIYVGGLLVMFAYVAALS 72
Cdd:MTH00115   29 VVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLA 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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