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Conserved domains on  [gi|1824661651|ref|YP_009734777|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Tetrix ruyuanensis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-332 5.38e-81

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 249.36  E-value: 5.38e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651   1 MKKTPMKTLFYMMLIMSTMMSITATSWLGVWMGLEINLLSFIPLISNQ--STFNTSSIKYFITQTLASIMLITSFITLMM 78
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKknLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  79 SLFNQhKEIIYMMMTMSILMKMGAAPMHFWFPEVMEFLEWKNCMLLMTWQKIAPMIMMSYIDINQLFMTvIIIMSATVGA 158
Cdd:MTH00160   81 NLMLF-NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIII-IIILSAIIGA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 159 ILGLNQISLRLILAYSSINHMGWMLASIQTSMTNWMLYFMIYSLLTMLISFSFKSNNINFINEMFINKNNHKIDKLNSAI 238
Cdd:MTH00160  159 IGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 239 AFLSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLILSSTITLYFYMKMFLSAGILSFKENKWLKNNF-FIKNKSLMLM 317
Cdd:MTH00160  239 NLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKkNKFSLILNFL 318

                         330
                  ....*....|....*
gi 1824661651 318 NMISTLGLMLSPMIL 332
Cdd:MTH00160  319 SFISLFGLILSSLLF 333
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-332 5.38e-81

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 249.36  E-value: 5.38e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651   1 MKKTPMKTLFYMMLIMSTMMSITATSWLGVWMGLEINLLSFIPLISNQ--STFNTSSIKYFITQTLASIMLITSFITLMM 78
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKknLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  79 SLFNQhKEIIYMMMTMSILMKMGAAPMHFWFPEVMEFLEWKNCMLLMTWQKIAPMIMMSYIDINQLFMTvIIIMSATVGA 158
Cdd:MTH00160   81 NLMLF-NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIII-IIILSAIIGA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 159 ILGLNQISLRLILAYSSINHMGWMLASIQTSMTNWMLYFMIYSLLTMLISFSFKSNNINFINEMFINKNNHKIDKLNSAI 238
Cdd:MTH00160  159 IGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 239 AFLSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLILSSTITLYFYMKMFLSAGILSFKENKWLKNNF-FIKNKSLMLM 317
Cdd:MTH00160  239 NLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKkNKFSLILNFL 318

                         330
                  ....*....|....*
gi 1824661651 318 NMISTLGLMLSPMIL 332
Cdd:MTH00160  319 SFISLFGLILSSLLF 333
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-278 2.62e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 94.69  E-value: 2.62e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  24 ATSWLGVWMGLEINLLSFIPLI---SNQSTFNTSSIKYFITQTLASIMLI------------TSFITLMMSLFNQHKE-- 86
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgywGKSPRSSEAGMKYFLLTLLGSSILLfgislmynytgtLSFDELSKALTGGLNSsg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  87 --IIYMMMTMSILMKMGAAPMHFWFPEVMEFLEWKNCMLL-MTWQKIAPMIMM--------SYIDINQLFMtVIIIMSAT 155
Cdd:pfam00361  81 llLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylpSSPFIQQILL-ILAIISML 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 156 VGAILGLNQISLRLILAYSSINHMGWMLASI----QTSMTNWMLYFMIYSLLTMLI-----SFSFKSNNINFINEMFINK 226
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLflcagSVIYRRVHTRNIRDYGGLA 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1824661651 227 NNHKIDKLNSAIAFLSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLILSS 278
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-287 4.30e-20

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 90.56  E-value: 4.30e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  10 FYMMLIMST---MMSITATSWLGVWMGLEINLLSFIPLIS---NQSTFNTSSIKYFITQTLASIMLI------------T 71
Cdd:COG1007   104 FYALLLFATlgmMLMASANDLLTLFLGLELLSLSLYVLVAfrrDDRRSSEAALKYFLLGALSSGFLLygisllygatgsL 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  72 SFITLMMSLFNQHKEIIYM-----MMTMSILMKMGAAPMHFWFPEVMEFLEWKNCMLLMTWQKIAPMIMM---------S 137
Cdd:COG1007   184 NLAGIAAALAAGGANSPLLllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpG 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 138 YIDINQLFMTVIIIMSATVGAILGLNQISLRLILAYSSINHMGWMLASI----QTSMTNWMLYFMIYSLLT-----MLIS 208
Cdd:COG1007   264 LAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNlgafaVILL 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 209 FSFKsnninfinemfiNKNNHKIDKLNS------------AIAFLSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLIL 276
Cdd:COG1007   344 LSRK------------GGEAEEIEDLAGlarrspllalamTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVL 411

                         330
                  ....*....|.
gi 1824661651 277 SSTITLYFYMK 287
Cdd:COG1007   412 NSVISAYYYLR 422
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-317 2.47e-17

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 82.30  E-value: 2.47e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651   8 TLFYMMLIMSTMMSITATSWLGVWMGLEINLLSFIPLIS--NQSTFNT-SSIKYFITQTLASIML------------ITS 72
Cdd:TIGR01770 105 YILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlkRKSRFSTeAGLKYFILGAFSSGLLlfgisliygftgSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  73 FITLMMSLFNQHKEIIYM-----MMTMSILMKMGAAPMHFWFPEVMEFLEWKNCMLLMTWQKIA---------PMIMMSY 138
Cdd:TIGR01770 185 FEDLLLFLSNGMLNISLLllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifavflrlfLYILFGF 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 139 IDINQLFMTVIIIMSATVGAILGLNQISLRLILAYSSINHMGWMLASI----QTSMTNWMLYFMIYSLLTM------LIS 208
Cdd:TIGR01770 265 SEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLlagtLEGIKAVLFYIFIYALMSLgafgvlSLL 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 209 FSFKSNNINFINEMFINKNNHKIDKLNSAIAFLSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLILSSTITLYFYMKm 288
Cdd:TIGR01770 345 RSYKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR- 423

                         330       340
                  ....*....|....*....|....*....
gi 1824661651 289 fLSAGILSFKENKWLKNNFFIKNKSLMLM 317
Cdd:TIGR01770 424 -VVKVMYFDKPERRIPSNPQSKAQSLLLS 451
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-332 5.38e-81

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 249.36  E-value: 5.38e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651   1 MKKTPMKTLFYMMLIMSTMMSITATSWLGVWMGLEINLLSFIPLISNQ--STFNTSSIKYFITQTLASIMLITSFITLMM 78
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKknLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  79 SLFNQhKEIIYMMMTMSILMKMGAAPMHFWFPEVMEFLEWKNCMLLMTWQKIAPMIMMSYIDINQLFMTvIIIMSATVGA 158
Cdd:MTH00160   81 NLMLF-NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIII-IIILSAIIGA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 159 ILGLNQISLRLILAYSSINHMGWMLASIQTSMTNWMLYFMIYSLLTMLISFSFKSNNINFINEMFINKNNHKIDKLNSAI 238
Cdd:MTH00160  159 IGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 239 AFLSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLILSSTITLYFYMKMFLSAGILSFKENKWLKNNF-FIKNKSLMLM 317
Cdd:MTH00160  239 NLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKkNKFSLILNFL 318

                         330
                  ....*....|....*
gi 1824661651 318 NMISTLGLMLSPMIL 332
Cdd:MTH00160  319 SFISLFGLILSSLLF 333
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 2-328 1.81e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 178.16  E-value: 1.81e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651   2 KKTPMKTLFYMMLIMSTMMSITATSWLGVWMGLEINLLSFIPLISNQSTFN--TSSIKYFITQTLASIMLITSFITLMMS 79
Cdd:MTH00144    1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSesESVVKYFIIQSLGSSLLIFGSLIMYNL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  80 LFNQhkeIIYMMMTMSILMKMGAAPMHFWFPEVMEFLEWKNCMLLMTWQKIAPMIMMSYIDIN---QLFMTVIIIMSATV 156
Cdd:MTH00144   81 SFSW---FSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLywlAYLLCVISVLSALV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 157 GAILGLNQISLRLILAYSSINHMGWMLASIQTSMTNWMLYFMIYSLLTMLISFSFKSNNINFINEMFiNKNNHKIDKLNS 236
Cdd:MTH00144  158 GSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLG-SLKPSYKTGLSI 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 237 AIAFLSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLILSSTITLYFYMKMFLSAGILSFKENKWLKNNFFikNKSLML 316
Cdd:MTH00144  237 ISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVL--NSSIIS 314

                         330
                  ....*....|..
gi 1824661651 317 MNMISTLGLMLS 328
Cdd:MTH00144  315 LNLLGGLLFLLL 326
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 7-332 1.36e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 171.54  E-value: 1.36e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651   7 KTLFYMMLIMSTMMSITATSWLGVWMGLEINLLSFIPLISNQSTFNT--SSIKYFITQTLASIMLItsFITLMMSLFNQH 84
Cdd:MTH00112    6 KLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRAteAATKYFLTQAAASALIL--FSSTTNAWNTGQ 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  85 KEIIYM-------MMTMSILMKMGAAPMHFWFPEVMEFLEWKNCMLLMTWQKIAPMIM--MSYIDINQLFMTVIIIMSAT 155
Cdd:MTH00112   84 WDITQLtnptsctLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLllMTSNSLNPTLLLTLAILSTL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 156 VGAILGLNQISLRLILAYSSINHMGWMLASIQTSMTNWMLYFMIYSLLTMLISFSFKSNNINFINEMFINKNNHKIDKLN 235
Cdd:MTH00112  164 IGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTT 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 236 SAIAFLSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLILSSTITLYFYMKMFLSAGIL-----SFKENKWLKNNffIK 310
Cdd:MTH00112  244 LMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITlppntTNMMMKWRTKP--KK 321

                         330       340
                  ....*....|....*....|..
gi 1824661651 311 NKSLMLMNMISTLGLMLSPMIL 332
Cdd:MTH00112  322 NTLTATLTTLSTLLLPLSPMIL 343
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 8-332 1.33e-47

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 163.48  E-value: 1.33e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651   8 TLFYMMLIMSTMMSITATSWLGVWMGLEINLLSFIPLISNQSTFNT--SSIKYFITQTLASIMLITSFITLMM-----SL 80
Cdd:MTH00105    7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSteAATKYFLTQATASMLLMMAIIINLMysgqwTI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  81 FNQHKEIIYMMMTMSILMKMGAAPMHFWFPEVMEFLEWKNCMLLMTWQKIAPMIMMSYID--INQLFMTVIIIMSATVGA 158
Cdd:MTH00105   87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISpsINPNLLLTLAILSILIGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 159 ILGLNQISLRLILAYSSINHMGWMLASIQTSMTNWMLYFMIYSLLTMLISFSFKSNNINFINEMFINKNNHKIDKLNSAI 238
Cdd:MTH00105  167 WGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 239 AFLSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLILSSTITLYFYMKMFLSAGILSFKENKWLKNNFFIKNKSLML-- 316
Cdd:MTH00105  247 TLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTKPMTll 326

                         330
                  ....*....|....*...
gi 1824661651 317 --MNMISTLGLMLSPMIL 332
Cdd:MTH00105  327 ptLIILSTMLLPLTPMLS 344
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 6-332 6.25e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 159.36  E-value: 6.25e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651   6 MKTLFYMMLIMSTMMSITATSWLGVWMGLEINLLSFIPLISNQ--STFNTSSIKYFITQTLASIMLITSFITLMMSLFN- 82
Cdd:MTH00200    5 ILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQhhPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQw 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  83 ----QHKEIIYMMMTMSILMKMGAAPMHFWFPEVMEFLEWKNCMLLMTWQKIAPMIMMS--YIDINQLFMTVIIIMSATV 156
Cdd:MTH00200   85 giseMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIqlAPALNSNILLLLGLLSVLV 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 157 GAILGLNQISLRLILAYSSINHMGWMLASIQTSMTNWMLYFMIYSLLTMLISFSFKSNNINFINEMFINKNNHKIDKLNS 236
Cdd:MTH00200  165 GGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 237 AIAFLSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLILSSTITLYFYMKMFLSAGILSFKENKWLKNNF---FIKNKS 313
Cdd:MTH00200  245 GLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWrtkSNSNLL 324

                         330
                  ....*....|....*....
gi 1824661651 314 LMLMNMISTLGLMLSPMIL 332
Cdd:MTH00200  325 VGLLLLLSILGLPLTPQLL 343
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 6-288 2.77e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 157.66  E-value: 2.77e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651   6 MKTLFYMMLIMS----TMMSITATSWLGVWMGLEINLLSFIPLISNQSTFNT--SSIKYFITQTLASIMLItsFITLMMS 79
Cdd:MTH00135    1 MNPYVLTILLFSlglgTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAveATTKYFLTQATAAAMIL--FASTTNA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  80 LFNQHKEIIYM-------MMTMSILMKMGAAPMHFWFPEVMEFLEWKNCMLLMTWQKIAPMIMMSYI-DINQLFMTVIII 151
Cdd:MTH00135   79 WLTGQWDIQQMshplpttMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIaPTNPTLLITLGL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 152 MSATVGAILGLNQISLRLILAYSSINHMGWMLASIQTSMTNWMLYFMIYSLLTMLISFSFKSNNINFINEMFINKNNHKI 231
Cdd:MTH00135  159 TSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPA 238

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1824661651 232 DKLNSAIAFLSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLILSSTITLYFYMKM 288
Cdd:MTH00135  239 LTALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRL 295
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 9-323 3.02e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 156.76  E-value: 3.02e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651   9 LFYMMLIMSTMMSITATSWLGVWMGLEINLLSFIPLISN--QSTFNTSSIKYFITQTLASIMLITSfiTLMMSLFNQHKE 86
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQnkSITENEGAMKYFLFQEFGSALLLMG--GSLSFSNLYLSL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  87 IIYMMMTMSILMKMGAAPMHFWFPEVMEFLEWKNCMLLMTWQKIAPMIMMSYIDINQLFMTVIIIMSATVGAILGLNQIS 166
Cdd:MTH00197   80 LSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQSN 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 167 LRLILAYSSINHMGWMLASIQTSMTNWMLYFMIYSLLTMLISFSFKSNNINFINEMFINKNNHKIDKLNSAIAFLSLGGM 246
Cdd:MTH00197  160 IRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGL 239

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1824661651 247 PPFIGFLPKWILMQELMQTSMYLTSMTLILSSTITLYFYMKMFLSAGILS-FKENKWLKNNFFIKNKSLMLMNMISTL 323
Cdd:MTH00197  240 PPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSnWMINFLMKINLLYSGLFILLMMMLPLL 317
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 8-332 1.34e-44

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 155.86  E-value: 1.34e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651   8 TLFYMMLIMSTMMSITATSWLGVWMGLEINLLSFIPLISNQSTF--NTSSIKYFITQTLASIM-----LITSFITLMMSL 80
Cdd:MTH00041    7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPrsVEATIKYFLVQAFSAAIllngaLIQAWLSGSWSI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  81 FNQHKEIIYMMMTMSILMKMGAAPMHFWFPEVMEFLEWKNCMLLMTWQKIAPMIMMSYI--DINQLFMTVIIIMSATVGA 158
Cdd:MTH00041   87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISIsnLLNSNILILCGILSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 159 ILGLNQISLRLILAYSSINHMGWMLASIQTSMTNWMLYFMIYSLLTMLISFSFKSNNINFINEMFINKNNHKIDKLNSAI 238
Cdd:MTH00041  167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 239 AFLSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLILSSTITLYFYMKMFLSAGILSFKENKWL------KNNFFIKNK 312
Cdd:MTH00041  247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISlfswrnSGNITVYGV 326

                         330       340
                  ....*....|....*....|
gi 1824661651 313 SLMLMNMISTLGLMLSPMIL 332
Cdd:MTH00041  327 ILSILSSISILGLLLIPLFL 346
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-291 4.61e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 151.47  E-value: 4.61e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651   1 MKKTPMKTLFYMMLIMSTMMSITATSWLGVWMGLEINLLSFIPLI--SNQSTFNTSSIKYFITQTLASIMLITSfITLMM 78
Cdd:MTH00011    2 MSTFPTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMtsSKMNQESEAAVKYFLAQALGSGLLLLG-MTMMW 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  79 SLFNQHKEIIYMMMTMSILMKMGAAPMHFWFPEVMEFLEWKNCMLLMTWQKIAP-MIMMSYIDINQL-FMTVIIIMSATV 156
Cdd:MTH00011   81 SFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPlSILFFFTSHNILpMMTSMAAMSALA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 157 GAILGLNQISLRLILAYSSINHMGWMLASIQTSMTNWMLYFMIYSLLTMLISFSFKSNNINFINEMFINKNNHKIDKLNS 236
Cdd:MTH00011  161 GGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSL 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1824661651 237 AIAFLSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLILSSTITLYFYMKMFLS 291
Cdd:MTH00011  241 FIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN 295
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 14-330 7.57e-43

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 151.23  E-value: 7.57e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  14 LIMSTMMSITATSWLGVWMGLEINLLSFIPLISNQSTFNT--SSIKYFITQTLASIMLItsFITLMMSLFNQHKEIIYM- 90
Cdd:MTH00070   13 LALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRAteAATKYFLTQASASALIL--FSSTINAWFTGEWTIMNMq 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  91 ------MMTMSILMKMGAAPMHFWFPEVMEFLEWKNCMLLMTWQKIAPMIMMSYID--INQLFMTVIIIMSATVGAILGL 162
Cdd:MTH00070   91 tplptiMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQIShlLNSNLLIIMGLLSTLIGGWGGL 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 163 NQISLRLILAYSSINHMGWMLASIQTSMTNWMLYFMIYSLLTMLISFSFKSNNINFINEMFINKNNHKIDKLNSAIAFLS 242
Cdd:MTH00070  171 NQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLS 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 243 LGGMPPFIGFLPKWILMQELMQTSMYLTSMTLILSSTITLYFYMKMFLSAGILSFKENKWLKNNFFIKNKSLMLMNMIST 322
Cdd:MTH00070  251 LGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSLTII 330


                  ....*...
gi 1824661651 323 LGLMLSPM 330
Cdd:MTH00070  331 LSLMLLPI 338
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-288 4.48e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 98.18  E-value: 4.48e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  13 MLIMSTMMSITATSWLGVWMGLEINLLSFIPLIS---NQSTFNTSSIKYFITQTLAS------------------IMLIT 71
Cdd:MTH00196    1 MVALGILCLISSSNWLSVYLAIELQTLSLFILIAqnrGSGYSAEAGLKYFVLGALSSglflfgcallcgttgglhLSYIN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  72 SFITLMMSLFNQHKEIIYMMMTMSILMKMGAAPMHFWFPEVMEFLEWKNCMLLMTWQKIAPMIMMSYIDINQLFMTVIII 151
Cdd:MTH00196   81 LVLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 152 MSATVGAILGLNQISLRLILAYSSINHMGWML--------ASIQTSMTNWMLY-FMIYSLLTMLISFSFksnNINFINEM 222
Cdd:MTH00196  161 FSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLwgieigsfESIQASLVYLFIYiIMSICVFSIILALNV---YKNLIIEF 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1824661651 223 FINKNNHKIDKLNSAIAFLSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLILSSTITLYFYMKM 288
Cdd:MTH00196  238 SGLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-278 2.62e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 94.69  E-value: 2.62e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  24 ATSWLGVWMGLEINLLSFIPLI---SNQSTFNTSSIKYFITQTLASIMLI------------TSFITLMMSLFNQHKE-- 86
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgywGKSPRSSEAGMKYFLLTLLGSSILLfgislmynytgtLSFDELSKALTGGLNSsg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  87 --IIYMMMTMSILMKMGAAPMHFWFPEVMEFLEWKNCMLL-MTWQKIAPMIMM--------SYIDINQLFMtVIIIMSAT 155
Cdd:pfam00361  81 llLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylpSSPFIQQILL-ILAIISML 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 156 VGAILGLNQISLRLILAYSSINHMGWMLASI----QTSMTNWMLYFMIYSLLTMLI-----SFSFKSNNINFINEMFINK 226
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLflcagSVIYRRVHTRNIRDYGGLA 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1824661651 227 NNHKIDKLNSAIAFLSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLILSS 278
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-287 4.30e-20

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 90.56  E-value: 4.30e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  10 FYMMLIMST---MMSITATSWLGVWMGLEINLLSFIPLIS---NQSTFNTSSIKYFITQTLASIMLI------------T 71
Cdd:COG1007   104 FYALLLFATlgmMLMASANDLLTLFLGLELLSLSLYVLVAfrrDDRRSSEAALKYFLLGALSSGFLLygisllygatgsL 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  72 SFITLMMSLFNQHKEIIYM-----MMTMSILMKMGAAPMHFWFPEVMEFLEWKNCMLLMTWQKIAPMIMM---------S 137
Cdd:COG1007   184 NLAGIAAALAAGGANSPLLllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpG 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 138 YIDINQLFMTVIIIMSATVGAILGLNQISLRLILAYSSINHMGWMLASI----QTSMTNWMLYFMIYSLLT-----MLIS 208
Cdd:COG1007   264 LAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNlgafaVILL 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 209 FSFKsnninfinemfiNKNNHKIDKLNS------------AIAFLSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLIL 276
Cdd:COG1007   344 LSRK------------GGEAEEIEDLAGlarrspllalamTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVL 411

                         330
                  ....*....|.
gi 1824661651 277 SSTITLYFYMK 287
Cdd:COG1007   412 NSVISAYYYLR 422
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 12-288 1.40e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 86.22  E-value: 1.40e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  12 MMLIMSTMMSITATSWLGVWMGLEINLLSFIPL--ISNQSTFNT-SSIKYFITQTLASIMLI------------TSFITL 76
Cdd:MTH00199  104 LIVALGSLLLVSSINWLSIYLAIELQTLTLFILvaLKRDSAYSTeAGLKYFVLGAVSSGLFLfgcallygltgeTSIQGI 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  77 MMSLFnqhKEIIYMMMTMSILMKMGAAPMHFWFPEVMEFLEWKNCMLLMTWQKIAPMIMMSYIDINQLFMTVIIIMSATV 156
Cdd:MTH00199  184 NSILT---GDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIY 260

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 157 GAILGLNQISLRLILAYSSINHMGWML--------ASIQTSMTnWMLYFMIYSLLTMLISFSFKSNNiNFINEMFINKNN 228
Cdd:MTH00199  261 GAIGALNQTKIKRLLAYSGIGHMGFILfgvaigsfESIQASLI-YMIIYVIMSICSFSIILSLKLTK-GLIVEVSGLSRK 338

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 229 HKIDKLNSAIAFLSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLILSSTITLYFYMKM 288
Cdd:MTH00199  339 NPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-317 2.47e-17

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 82.30  E-value: 2.47e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651   8 TLFYMMLIMSTMMSITATSWLGVWMGLEINLLSFIPLIS--NQSTFNT-SSIKYFITQTLASIML------------ITS 72
Cdd:TIGR01770 105 YILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlkRKSRFSTeAGLKYFILGAFSSGLLlfgisliygftgSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  73 FITLMMSLFNQHKEIIYM-----MMTMSILMKMGAAPMHFWFPEVMEFLEWKNCMLLMTWQKIA---------PMIMMSY 138
Cdd:TIGR01770 185 FEDLLLFLSNGMLNISLLllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifavflrlfLYILFGF 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 139 IDINQLFMTVIIIMSATVGAILGLNQISLRLILAYSSINHMGWMLASI----QTSMTNWMLYFMIYSLLTM------LIS 208
Cdd:TIGR01770 265 SEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLlagtLEGIKAVLFYIFIYALMSLgafgvlSLL 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 209 FSFKSNNINFINEMFINKNNHKIDKLNSAIAFLSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLILSSTITLYFYMKm 288
Cdd:TIGR01770 345 RSYKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR- 423

                         330       340
                  ....*....|....*....|....*....
gi 1824661651 289 fLSAGILSFKENKWLKNNFFIKNKSLMLM 317
Cdd:TIGR01770 424 -VVKVMYFDKPERRIPSNPQSKAQSLLLS 451
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
5-332 3.38e-16

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 79.09  E-value: 3.38e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651   5 PMKTLFYMMLIMST---MMSITATSWLGVWMGLEINLLSFIPLIS--NQSTFNT-SSIKYFITQTLASIMLI-------- 70
Cdd:PRK05777  100 RGRGEFYLLVLFALlgmMVMVSANDLLTLFLGLELLSLPLYALAAlrRDRRRSLeAAIKYFVLGALASGFLLygmsllyg 179

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  71 ----TSFITLMMSLFNQHKEIIYM-----MMTMSILMKMGAAPMHFWFPEVMEFLEWKNCMLLMTWQKIAPMIMM----- 136
Cdd:PRK05777  180 atgsLSFAGIAKALADGSGNSLLLlfglvFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllv 259

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 137 ----SYIDINQLFMTVIIIMSATVGAILGLNQISLRLILAYSSINHMGWML----ASIQTSMTNWMLYFMIYSLLTmLIS 208
Cdd:PRK05777  260 vafgGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLvglaAGTAEGYSAVLFYLLAYLFMT-LGA 338

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 209 FSFksnnINFINEmfINKNNHKIDKLN--------SAIAF----LSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLIL 276
Cdd:PRK05777  339 FGV----ISLLRR--KGGEAESISDFAglskrsplLAAVMtifmLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVL 412

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 277 SSTITLYFYMK----MFLSAGILSFkenkwLKNNFFIKNKSLMLMNMISTLGLMLSPMIL 332
Cdd:PRK05777  413 NSAIGAFYYLRviklMYFDEPPRDA-----PVNWPLSAGGAVLSVSALLVLVLGIFPQPL 467
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 89-288 7.12e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 78.36  E-value: 7.12e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  89 YMMMTMSILMKMGAAPMHFWFPEVMEFLEWKNCMLLMTWQKIAPMIMMSYIDINQLFMTVIIIMSATVGAILGLNQISLR 168
Cdd:MTH00198  302 YLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIK 381

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 169 LILAYSSINHMGWMLASIQT----SMTNWMLYFMIYsLLTMLISFSF----------------------KSNNINFINEM 222
Cdd:MTH00198  382 RLLAYSGIGHIGFILIGVSAgtyeSLQASWTYAVTY-LVSALASFTVictleefgtrtptsrqrdgsfgNYNLVRRLVDL 460

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1824661651 223 FINKNNHKIDKLNSAIAFLSLGGMPPFIGFLPKWILMQELMQTSM-------YLTSMTLILSSTITLYFYMKM 288
Cdd:MTH00198  461 TILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFssslsiyYLVALFAIICTCISAFYYIRI 533
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 10-293 1.19e-13

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 71.33  E-value: 1.19e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  10 FYMMLIMSTMMSITATSWLGVWMGLEINLLSFIPLISNQSTFN--TSSIKYFITQTLASIMLITSFI-------TLMMSL 80
Cdd:COG0651   112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEalRAGLKYLILNLVGSALFLLGVGllygatgTLNMAD 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  81 FNQH--------KEIIYMMMTMSILMKMGAAPMHFWFPE---------------VMeflewKNCM---LLMTWQKIAPMI 134
Cdd:COG0651   192 LAARlaeldpglLLAAFALLLVGFGIKAALFPLHFWLPDaypaapspvsallsgLL-----TKVGvyaILRVLTLLFGAD 266

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 135 MMSYIdinQLFMTVIIIMSATVGAILGLNQISLRLILAYSSINHMGWMLASI---QTSMTNWMLYFMIYSLLTM------ 205
Cdd:COG0651   267 PALFL---GTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLglgTPLGLAGALFHLLNHALAKallfla 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 206 --LISFSFKSNNINFINEMFinkNNHKIDKLNSAIAFLSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLILSSTITLY 283
Cdd:COG0651   344 agAIERATGTRDLDKLGGLG---KRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLA 420

                         330
                  ....*....|
gi 1824661651 284 FYMKMFLSAG 293
Cdd:COG0651   421 YFVRIFGRAQ 430
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 134-291 9.46e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 62.68  E-value: 9.46e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 134 IMMSYIDINQLFMTVIIIM---SATVGAILGLNQISLRLILAYSSINHMGW--MLASIQTSMT-NWMLYFMI-----YSL 202
Cdd:PRK12667  283 ISPSLIDFRAALSPILIILgavSAIIGALMMVVQKDVKRLLAYSTISHMGYifMGIGIGTQLGlAAALFHIInhaiaKSL 362

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 203 LTMLISFSFKSNNINFINEMFINKNNHKIDKLNSAIAFLSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLILSSTITL 282
Cdd:PRK12667  363 LFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISL 442


                  ....*....
gi 1824661651 283 YFYMKMFLS 291
Cdd:PRK12667  443 VGYFRAWYS 451
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 143-286 2.77e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 54.89  E-value: 2.77e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 143 QLFMTVIIIMSATVGAILGLNQISLRLILAYSSINHMGWMLASIQTSMTNWMLYFMIYSLLTMLisfsFKSNNINFINEM 222
Cdd:PRK08375  271 GWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHAL----MKGALFLAAGAI 346

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1824661651 223 FINKNNHKIDKLN--------SAIAF----LSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLILSSTITLyFYM 286
Cdd:PRK08375  347 EVTYGTRRLSELSglgrrmplTAAAFavasLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLAL-LYF 421
ndhB CHL00049
NADH dehydrogenase subunit 2
 87-287 5.32e-07

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 51.16  E-value: 5.32e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  87 IIYMMMTMSILMKMGAAPMHFWFPEVMEFLEWKNCMLLMTWQKIAPM--------IMMSYIDIN-QLFMTVIIIMSATVG 157
Cdd:CHL00049  215 IALIFITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASalatrifdIPFYFSSNEwHLLLEILAILSMILG 294

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 158 AILGLNQISLRLILAYSSINHMGWMLASI--------QTSMTNWMLYFMIYSLLTM--LISFSFK--SNNINFINEMFIN 225
Cdd:CHL00049  295 NLIAITQTSMKRMLAYSSIGQIGYVIIGIivgdsndgYASMITYMLFYIFMNLGTFacIVLFGLRtgTDNIRDYAGLYTK 374

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1824661651 226 KnnhKIDKLNSAIAFLSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLILSSTITLYFYMK 287
Cdd:CHL00049  375 D---PFLALSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLK 433
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
143-287 5.54e-07

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 50.82  E-value: 5.54e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 143 QLFMTVIIIMSATVGAILGLNQISLRLILAYSSINHMGW----MLASIQTSMTNWMLYFMIYSLL-----TMLISFSFKS 213
Cdd:PRK02504  276 KLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFvmigLVAGTEAGYASMVFYLLAYLFMnlgafACVILFSLRT 355

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1824661651 214 NNiNFINEMFINKNNHKIDKLNSAIAFLSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLILSSTITLYFYMK 287
Cdd:PRK02504  356 GT-DQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIR 428
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 12-309 1.10e-06

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 49.10  E-value: 1.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  12 MMLIMSTMMSITATSWLGVWMGLEinlLSFIPLISNQSTFNTSSIKYFITQTLASIMLITSFITLMMslfnqhkeiiymm 91
Cdd:MTH00091    1 LFLSLLNFMSLNIFVWWSVFLLMT---LLFVFLNKGMGSYSSLFNYFVLQESLGLLFLLFSFGYFQF------------- 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  92 mtMSILMKMGAAPMHFWFPEVMEFLEWKNCMLLMTWQKIAPMIMMSYIDINQLFMTVIIIMSATVGAILGLNqiSLRLIL 171
Cdd:MTH00091   65 --LILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQMFLLK--SYKNLL 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 172 AYSSINHMGWMLASIQTSMTNWMLYFMIYSLLTMLISFSFKSNNINFINEMFInknnhkidklnsaiaFLSLGGMPPFIG 251
Cdd:MTH00091  141 ILSSTESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFNNVNKLNFVSWET---------------LLVFMNLPFSVT 205

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1824661651 252 FLPKWILMQELMQTSMYLTSMTLILSSTITLYFYMKMFLSAGILSFKENKWLKNNFFI 309
Cdd:MTH00091  206 FFVKIFSLSEILKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYNKGFFFF 263
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 54-292 2.65e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 45.86  E-value: 2.65e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651  54 SSIKYFITQTLASIM--------------LITSFITLMMSLFNQHKEIIYM-MMTMSILMKMGAAPMHFWFPEVM-EFLE 117
Cdd:PRK08376  173 AGIKYMFVGSLASSMvllgiallygqygtLNMAYLAVKMSENPTVVAKIALaLFIAGLAMKSGAVPVHMWLPDAYpAAPS 252

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 118 WKNCMLLMTWQ----KIAPMIMMSYID-INQLFMTVIIIMSAT----VGAILGLNQISLRLILAYSSINHMGWMLASIQT 188
Cdd:PRK08376  253 SISAMLLVIKQaglyALARVLFSIYGPaINLATVGWVIIILGCltmfVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGV 332

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 189 SMTNW--------------------MLYFMIYSLLTMLISFSFKSNNINFINEMFINKNNHKIDKLNSAIAFLSLGGMPP 248
Cdd:PRK08376  333 GLAALgdpamasygeialaggiyhiVNHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPP 412

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1824661651 249 FIGFLPKWILMQELMQTSMYLTSMTLIlSSTITLYFYMKMFLSA 292
Cdd:PRK08376  413 FNGFASKWLIYESSALFNPILGVIAMI-GSVLTLASFVKVFHTA 455
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
147-292 1.72e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 43.01  E-value: 1.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 147 TVIIIMSAT---VGAILGLNQISLRLILAYSSINHMGWMLASIQTS------------------MTnwMLYFMIYSLLTM 205
Cdd:PRK12663  273 PLLATMAAItmvIGALGALAYKDIRRIAGYQVISSIGFILLGLALGtpagingaifylvhdmvvKT--ALFLIAGSLVRL 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 206 LISFSFKSNNINFINEMFINknnhkidkLNSAIAFLSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLILSSTITLYFY 285
Cdd:PRK12663  351 TGYRSLQYLGGLYRKEPLFG--------ALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSL 422


                  ....*..
gi 1824661651 286 MKMFLSA 292
Cdd:PRK12663  423 FRIFFLA 429
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 144-292 1.21e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 40.32  E-value: 1.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 144 LFMTVIIIMSATVGAIlglNQISLRLILAYSSINHMGWMLASI----QTSMTNWMLYFM----IYSLLTMLISFSFKSNN 215
Cdd:PRK07691  279 LILALLTIIFGVIGAV---AYFDIKKIIIYNIMIAVGVILVGVammtESGMIGAIYYLIhdmiVKAALFLLIGIMIKITG 355

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1824661651 216 INFINEMFINKNNHKIDKLNSAIAFLSLGGMPPFIGFLPKWILMQELMQTSMYLTSMTLILSSTITLYFYMKMFLSA 292
Cdd:PRK07691  356 TTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKIFLKG 432
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 151-289 3.49e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 38.97  E-value: 3.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824661651 151 IMSATVGAILGLNQISLRLILAYSSINHMGWMLASIQTSM---TNWMLYFMI-YSLLTMLISFS-------FKSNNINFI 219
Cdd:PRK08676  281 IFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTplaLFWMLFHMLaHSLVKSGLFFSagilhrqYRSDRFDRI 360

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1824661651 220 NEMFINKNNHKIDKLNSAIAFLslgGMPPFIGFLPKWILMQELMQTSMYLTSMTL---ILSSTITLYFYMKMF 289
Cdd:PRK08676  361 FDVFRLQPVAAWGVILGSAAII---GMPPFPLFLSKFFILLQLGGISVWLVLAVLlllLLAASSFAIFLLKAF 430
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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