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Conserved domains on  [gi|1822387293|ref|XP_032776024|]
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chondroadherin-like protein [Strigops habroptila]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 11469232)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

Gene Ontology:  GO:0005515
PubMed:  11751054|7583641|14747988
SCOP:  4003523

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
17-139 4.09e-19

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 88.07  E-value: 4.09e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1822387293  17 LNFTSSNITHLDWgALVGVRGLQELYLSHCSITDISNAQGVPPALEVLHLSHNLLERLPgSFLEDAPNLRVLYLDNNQLQ 96
Cdd:COG4886   118 LDLSGNQLTDLPE-ELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLP-EELGNLTNLKELDLSNNQIT 195

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1822387293  97 ELPGSfLKASTQLQEVYLGFNALTFLPASLLK-PSLLHLQLSNN 139
Cdd:COG4886   196 DLPEP-LGNLTNLEELDLSGNQLTDLPEPLANlTNLETLDLSNN 238
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
17-139 4.09e-19

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 88.07  E-value: 4.09e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1822387293  17 LNFTSSNITHLDWgALVGVRGLQELYLSHCSITDISNAQGVPPALEVLHLSHNLLERLPgSFLEDAPNLRVLYLDNNQLQ 96
Cdd:COG4886   118 LDLSGNQLTDLPE-ELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLP-EELGNLTNLKELDLSNNQIT 195

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1822387293  97 ELPGSfLKASTQLQEVYLGFNALTFLPASLLK-PSLLHLQLSNN 139
Cdd:COG4886   196 DLPEP-LGNLTNLEELDLSGNQLTDLPEPLANlTNLETLDLSNN 238
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 41-139 1.09e-10

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 60.96  E-value: 1.09e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1822387293  41 LYLSHCSITDISNaQGVPPALEVLHLSHNLLERLPGsfLEDAPNLRVLYLDNNQLQELPGsfLKASTQLQEVYLGFN--- 117
Cdd:cd21340     7 LYLNDKNITKIDN-LSLCKNLKVLYLYDNKITKIEN--LEFLTNLTHLYLQNNQIEKIEN--LENLVNLKKLYLGGNris 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1822387293 118 -------------------------ALTFLPASL--LKPSLLHLQLSNN 139
Cdd:cd21340    82 vveglenltnleelhienqrlppgeKLTFDPRSLaaLSNSLRVLNISGN 130
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
37-160 2.50e-07

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 52.78  E-value: 2.50e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1822387293  37 GLQELYLSHCSITDISnaQGVPPALEVLHLSHNLLERLPGSFledAPNLRVLYLDNNQLQELPGSFlkaSTQLQEVYLGF 116
Cdd:PRK15370  305 GITHLNVQSNSLTALP--ETLPPGLKTLEAGENALTSLPASL---PPELQVLDVSKNQITVLPETL---PPTITTLDVSR 376

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1822387293 117 NALTFLPASlLKPSLLHLQLSNNSwdcscaLLSTLEGWPSLAAE 160
Cdd:PRK15370  377 NALTNLPEN-LPAALQIMQASRNN------LVRLPESLPHFRGE 413
LRR_8 pfam13855
Leucine rich repeat;
59-119 2.82e-07

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 47.13  E-value: 2.82e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1822387293  59 PALEVLHLSHNLLERLPGSFLEDAPNLRVLYLDNNQLQEL-PGSFLKaSTQLQEVYLGFNAL 119
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLsPGAFSG-LPSLRYLDLSGNRL 61
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
17-139 4.09e-19

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 88.07  E-value: 4.09e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1822387293  17 LNFTSSNITHLDWgALVGVRGLQELYLSHCSITDISNAQGVPPALEVLHLSHNLLERLPgSFLEDAPNLRVLYLDNNQLQ 96
Cdd:COG4886   118 LDLSGNQLTDLPE-ELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLP-EELGNLTNLKELDLSNNQIT 195

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1822387293  97 ELPGSfLKASTQLQEVYLGFNALTFLPASLLK-PSLLHLQLSNN 139
Cdd:COG4886   196 DLPEP-LGNLTNLEELDLSGNQLTDLPEPLANlTNLETLDLSNN 238
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
17-139 6.60e-19

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 87.30  E-value: 6.60e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1822387293  17 LNFTSSNITHLDwGALVGVRGLQELYLSHCSITDISNAQGVPPALEVLHLSHNLLERLPGSfLEDAPNLRVLYLDNNQLQ 96
Cdd:COG4886   164 LDLSNNQLTDLP-EELGNLTNLKELDLSNNQITDLPEPLGNLTNLEELDLSGNQLTDLPEP-LANLTNLETLDLSNNQLT 241

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1822387293  97 ELPGsfLKASTQLQEVYLGFNALTFLPASLLKPSLLHLQLSNN 139
Cdd:COG4886   242 DLPE--LGNLTNLEELDLSNNQLTDLPPLANLTNLKTLDLSNN 282
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
22-139 3.34e-16

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 79.21  E-value: 3.34e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1822387293  22 SNITHLDWG---ALVGVRGLQELYLSHCSITDISNAQGVPPALEVLHLSHNLLERLPgSFLEDAPNLRVLYLDNNQLQEL 98
Cdd:COG4886    96 TNLTELDLSgneELSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLP-EPLGNLTNLKSLDLSNNQLTDL 174

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1822387293  99 PgSFLKASTQLQEVYLGFNALTFLPASLLK-PSLLHLQLSNN 139
Cdd:COG4886   175 P-EELGNLTNLKELDLSNNQITDLPEPLGNlTNLEELDLSGN 215
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 41-139 1.09e-10

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 60.96  E-value: 1.09e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1822387293  41 LYLSHCSITDISNaQGVPPALEVLHLSHNLLERLPGsfLEDAPNLRVLYLDNNQLQELPGsfLKASTQLQEVYLGFN--- 117
Cdd:cd21340     7 LYLNDKNITKIDN-LSLCKNLKVLYLYDNKITKIEN--LEFLTNLTHLYLQNNQIEKIEN--LENLVNLKKLYLGGNris 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1822387293 118 -------------------------ALTFLPASL--LKPSLLHLQLSNN 139
Cdd:cd21340    82 vveglenltnleelhienqrlppgeKLTFDPRSLaaLSNSLRVLNISGN 130
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
17-222 1.33e-09

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 59.18  E-value: 1.33e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1822387293  17 LNFTSSNITHLDwGALVGVRGLQELYLSHCSITDISNAQGVPpALEVLHLSHNLLERLPgsFLEDAPNLRVLYLDNNQLQ 96
Cdd:COG4886   210 LDLSGNQLTDLP-EPLANLTNLETLDLSNNQLTDLPELGNLT-NLEELDLSNNQLTDLP--PLANLTNLKTLDLSNNQLT 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1822387293  97 ELPGSFLKASTQLQEVYLGFNALTFLPASLLKPSLLHLQLSNNSWDCSCALLSTLEGWPSLAAEVICHTPERYHGLDLQS 176
Cdd:COG4886   286 DLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTL 365

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1822387293 177 IPRDELcHSLSLTALFVCLPPLLILASVTWCFCRRKRKTNYSFQSR 222
Cdd:COG4886   366 LLTLGL-LGLLEATLLTLALLLLTLLLLLLTTTAGVLLLTLALLDA 410
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
37-160 2.50e-07

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 52.78  E-value: 2.50e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1822387293  37 GLQELYLSHCSITDISnaQGVPPALEVLHLSHNLLERLPGSFledAPNLRVLYLDNNQLQELPGSFlkaSTQLQEVYLGF 116
Cdd:PRK15370  305 GITHLNVQSNSLTALP--ETLPPGLKTLEAGENALTSLPASL---PPELQVLDVSKNQITVLPETL---PPTITTLDVSR 376

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1822387293 117 NALTFLPASlLKPSLLHLQLSNNSwdcscaLLSTLEGWPSLAAE 160
Cdd:PRK15370  377 NALTNLPEN-LPAALQIMQASRNN------LVRLPESLPHFRGE 413
LRR_8 pfam13855
Leucine rich repeat;
59-119 2.82e-07

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 47.13  E-value: 2.82e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1822387293  59 PALEVLHLSHNLLERLPGSFLEDAPNLRVLYLDNNQLQEL-PGSFLKaSTQLQEVYLGFNAL 119
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLsPGAFSG-LPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
83-139 7.10e-07

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 45.98  E-value: 7.10e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1822387293  83 PNLRVLYLDNNQLQELPGSFLKASTQLQEVYLGFNALTFLPASLLK--PSLLHLQLSNN 139
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSglPSLRYLDLSGN 59
LRR_8 pfam13855
Leucine rich repeat;
17-71 9.43e-07

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 45.59  E-value: 9.43e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1822387293  17 LNFTSSNITHLDWGALVGVRGLQELYLSHCSITDISNAQGVP-PALEVLHLSHNLL 71
Cdd:pfam13855   6 LDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGlPSLRYLDLSGNRL 61
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
38-143 2.24e-06

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 49.70  E-value: 2.24e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1822387293  38 LQELYLSHCSITDISnaQGVPPALEVLHLSHNLLERLPGSFLEDapnLRVLYLDNNQLQELPGSFlkaSTQLQEVYLGFN 117
Cdd:PRK15370  243 IQEMELSINRITELP--ERLPSALQSLDLFHNKISCLPENLPEE---LRYLSVYDNSIRTLPAHL---PSGITHLNVQSN 314

                          90       100
                  ....*....|....*....|....*.
gi 1822387293 118 ALTFLPASlLKPSLLHLQLSNNSWDC 143
Cdd:PRK15370  315 SLTALPET-LPPGLKTLEAGENALTS 339
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 16-157 2.28e-05

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 45.81  E-value: 2.28e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1822387293  16 CLNFTSSN--ITHLDWGALVGVRGLQELYLSHCSITDiSNAQGVP-----PALEVLHLSHNLLERLPGSFLEDA-----P 83
Cdd:cd00116    59 SLNETGRIprGLQSLLQGLTKGCGLQELDLSDNALGP-DGCGVLEsllrsSSLQELKLNNNGLGDRGLRLLAKGlkdlpP 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1822387293  84 NLRVLYLDNNQLQELP----GSFLKASTQLQEVYLGFNALTFLPASLLKPSLLH------LQLSNNSWDCS-CALLS-TL 151
Cdd:cd00116   138 ALEKLVLGRNRLEGAScealAKALRANRDLKELNLANNGIGDAGIRALAEGLKAncnlevLDLNNNGLTDEgASALAeTL 217


                  ....*.
gi 1822387293 152 EGWPSL 157
Cdd:cd00116   218 ASLKSL 223
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 59-100 2.01e-04

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 38.38  E-value: 2.01e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1822387293  59 PALEVLHLSHNLLERLPgsFLEDAPNLRVLYL-DNNQLQELPG 100
Cdd:pfam12799   1 PNLEVLDLSNNQITDIP--PLAKLPNLETLDLsGNNKITDLSD 41
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 64-153 2.38e-04

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 42.08  E-value: 2.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1822387293  64 LHLSHNLLERLPGsfLEDAPNLRVLYLDNNQLQELPGsfLKASTQLQEVYLGFNALTFLP--ASLlkPSLLHLQLSNNSw 141
Cdd:cd21340     7 LYLNDKNITKIDN--LSLCKNLKVLYLYDNKITKIEN--LEFLTNLTHLYLQNNQIEKIEnlENL--VNLKKLYLGGNR- 79

                          90
                  ....*....|..
gi 1822387293 142 dcscalLSTLEG 153
Cdd:cd21340    80 ------ISVVEG 85
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 61-140 3.37e-04

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 41.96  E-value: 3.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1822387293  61 LEVLHLSHNLLERLPGSFLEDA----PNLRVLYLDNNQLQELP------GSFLKASTQLQEVYLGFNALTF-----LPAS 125
Cdd:cd00116    25 LQVLRLEGNTLGEEAAKALASAlrpqPSLKELCLSLNETGRIPrglqslLQGLTKGCGLQELDLSDNALGPdgcgvLESL 104

                          90
                  ....*....|....*
gi 1822387293 126 LLKPSLLHLQLSNNS 140
Cdd:cd00116   105 LRSSSLQELKLNNNG 119
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 38-69 1.19e-03

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 36.45  E-value: 1.19e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1822387293  38 LQELYLSHCSITDISNAQGVpPALEVLHLSHN 69
Cdd:pfam12799   3 LEVLDLSNNQITDIPPLAKL-PNLETLDLSGN 33
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 83-117 2.01e-03

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 35.68  E-value: 2.01e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1822387293  83 PNLRVLYLDNNQLQELPgsFLKASTQLQEVYLGFN 117
Cdd:pfam12799   1 PNLEVLDLSNNQITDIP--PLAKLPNLETLDLSGN 33
PLN03150 PLN03150
hypothetical protein; Provisional
 28-101 9.44e-03

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 37.87  E-value: 9.44e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1822387293  28 DWGALvgvRGLQELYLSHCSIT-DISNAQGVPPALEVLHLSHNLLERLPGSFLEDAPNLRVLYLDNNQLQ-ELPGS 101
Cdd:PLN03150  437 DISKL---RHLQSINLSGNSIRgNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSgRVPAA 509
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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