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general secretion pathway protein C [Diaphorobacter sp. HDW4A]
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
T2SSC super family | cl44344 | Type II secretion system protein C; This is the greater N-terminal region of GspC-type ... |
17-123 | 3.05e-07 | |||
Type II secretion system protein C; This is the greater N-terminal region of GspC-type proteins. GspC proteins form part of the sophisticated transport mechanism of Gram-negative pathogens for injecting divers proteins into their hosts, a type-II secretion system - T2SS. The region is made up of a short N-terminal cytoplasmic domain that is followed by the single transmembrane helix, a Pro-rich linker, and the so-called homology region domain in the periplasm. This inner membrane GspC interacts with the outer membrane secretin GspD via periplasmic domains, an interaction which is critical for the effectiveness of type II secretion. The actual alignment was detected with superfamily member pfam11356: Pssm-ID: 457689 Cd Length: 142 Bit Score: 47.76 E-value: 3.05e-07
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Name | Accession | Description | Interval | E-value | |||
T2SSC | pfam11356 | Type II secretion system protein C; This is the greater N-terminal region of GspC-type ... |
17-123 | 3.05e-07 | |||
Type II secretion system protein C; This is the greater N-terminal region of GspC-type proteins. GspC proteins form part of the sophisticated transport mechanism of Gram-negative pathogens for injecting divers proteins into their hosts, a type-II secretion system - T2SS. The region is made up of a short N-terminal cytoplasmic domain that is followed by the single transmembrane helix, a Pro-rich linker, and the so-called homology region domain in the periplasm. This inner membrane GspC interacts with the outer membrane secretin GspD via periplasmic domains, an interaction which is critical for the effectiveness of type II secretion. Pssm-ID: 431837 Cd Length: 142 Bit Score: 47.76 E-value: 3.05e-07
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PulC | COG3031 | Type II secretory pathway, component PulC [Intracellular trafficking, secretion, and vesicular ... |
67-159 | 1.52e-06 | |||
Type II secretory pathway, component PulC [Intracellular trafficking, secretion, and vesicular transport]; Pssm-ID: 442267 [Multi-domain] Cd Length: 220 Bit Score: 46.90 E-value: 1.52e-06
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Name | Accession | Description | Interval | E-value | |||
T2SSC | pfam11356 | Type II secretion system protein C; This is the greater N-terminal region of GspC-type ... |
17-123 | 3.05e-07 | |||
Type II secretion system protein C; This is the greater N-terminal region of GspC-type proteins. GspC proteins form part of the sophisticated transport mechanism of Gram-negative pathogens for injecting divers proteins into their hosts, a type-II secretion system - T2SS. The region is made up of a short N-terminal cytoplasmic domain that is followed by the single transmembrane helix, a Pro-rich linker, and the so-called homology region domain in the periplasm. This inner membrane GspC interacts with the outer membrane secretin GspD via periplasmic domains, an interaction which is critical for the effectiveness of type II secretion. Pssm-ID: 431837 Cd Length: 142 Bit Score: 47.76 E-value: 3.05e-07
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PulC | COG3031 | Type II secretory pathway, component PulC [Intracellular trafficking, secretion, and vesicular ... |
67-159 | 1.52e-06 | |||
Type II secretory pathway, component PulC [Intracellular trafficking, secretion, and vesicular transport]; Pssm-ID: 442267 [Multi-domain] Cd Length: 220 Bit Score: 46.90 E-value: 1.52e-06
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Blast search parameters | ||||
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