NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1821198309|gb|QIL40511|]
View 

zinc-dependent metalloprotease [Pedobacter sp. HDW13]

Protein Classification

zinc-dependent metalloprotease( domain architecture ID 12182352)

zinc-dependent metalloprotease containing DUF5118, DUF5117 and DUF4953 domains, contains the extended met-zincin motif HExxHxxGxxH/D, with the first two histidines acting as ligands of the catalytic zinc, the glutamate as the general base, a strictly conserved glycine, and a third zinc-binding histidine or aspartate

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
DUF4953 pfam16313
Met-zincin; This is a family of uncharacterized proteins that carry the highly characteriztic ...
430-744 4.24e-102

Met-zincin; This is a family of uncharacterized proteins that carry the highly characteriztic met-zincin mmotif HExxHxxGxxH, the extended zinc-binding domain of metallopeptidases.


:

Pssm-ID: 435269  Cd Length: 319  Bit Score: 318.81  E-value: 4.24e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309 430 NMKFSEELMGALIQAEISRTVGFTLGLTENLGSSYAIPLEKLRDKNWLANHPFNYSIMDYNHYNYVAQPADQVSRKGLI- 508
Cdd:pfam16313   1 KMPFPDELMGALLRFVSAHEVGHTLGLRHNFAASSAYPVDSLRDKSFTRKYGTTPSIMDYARFNYVAQPEDQIDLSGLYp 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309 509 PQISDYDKWAIKWAYTNT-GATSFEADKKIRLGWIKnNLNANTNLIFASQPagikPTDITNPTAQWEDLSNNPVGAAAYG 587
Cdd:pfam16313  81 PGIGPYDKWAIEWGYRPFpDAKTPEEEKAALDKWAE-RSAGDPGLRFGTDQ----DARGADPRAQTEDLGDDAVKASEYG 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309 588 IKNLKYVMANLIPWTTTGEN-TYYNTSDLYYTLVSQYSFFMRYAFTQIGGVTENLKTVDQVGDVYVPVAKIIQKQAVAFL 666
Cdd:pfam16313 156 IKNLKRILPNLPEWTAEKEGeDYSDLEELYVPVLLQYRRYIGHVAKNIGGVYYNYKVRGDPGPVYTPVPKEKQKEALDFL 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309 667 NKEVFNTPNWILDPNVLNKFRK--PAKKEDVTKMQEDALFKLIDPNRLFRMNTATMRFGkDKTYTVDEMLTDLRSGLYAE 744
Cdd:pfam16313 236 LKQLFETPEWLLDPNLLNKTRGldFDPHDRVEALQSRVLSALLSPGRLNRLVEQEARDG-DKAYTLAELLDDLRKGIFKE 314
DUF5117 pfam17148
Domain of unknown function (DUF5117); This domain may fall upstream of a met-zincin domain.
95-298 2.84e-52

Domain of unknown function (DUF5117); This domain may fall upstream of a met-zincin domain.


:

Pssm-ID: 465363  Cd Length: 189  Bit Score: 180.50  E-value: 2.84e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309  95 GDLMNGIIVSFEKAAGDK-LFVRAITNVAQSDPSNE-LAKAVKNATIDPIIMVLDLKARSVDGKSSVVEMTDFFLKDN-L 171
Cdd:pfam17148   1 GDKVNEQVIRFEKGGNDKlLLLRNVSYRNVAPDSDAaIAKAVKNSNLDPILAAFDIKAYNKDSSAVVIDVTDFFNGDNkL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309 172 ISGFHPAAKKQMGTGAPAADRSAILGMEAYPNNIEVKSLKTYAlavaprpaaadgdspadaSAPAPSSVGVTFEISNSVM 251
Cdd:pfam17148  81 FSPLLPRSKNGLGLGSLDSDRSYIESIKAFPDNIEIRSVLTYT------------------VPGGSSSGPVTVEVNTSLV 142
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1821198309 252 VLPKEAMKIQAYDPRVGFKSDSYTVFSDAQQKVEERRFIIKNRLEVK 298
Cdd:pfam17148 143 LLPEEPMKPRLADPRVGYFTTSYTDFSDDQQKVETKRYITRWRLEPK 189
ZnMc_MMP_like_2 cd04276
Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase ...
308-524 2.99e-51

Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.


:

Pssm-ID: 239803  Cd Length: 197  Bit Score: 177.90  E-value: 2.99e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309 308 GELVEPKEPLVYYIDPATPKQYRKYMIAGINNWNEAFKAAGFKNAIIGKEWPVNDKSMDLedgRFRVIRYMP------AI 381
Cdd:cd04276     1 AALSEPKEPIVYYLDNTFPEKYRDAIREGVLYWNKAFEKAGFKNAIIVKVLPDDADPGDI---RYNVIRWIHspnggwAY 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309 382 SPfvdnnQVTDPRSGEIIQTYIGWSHSQVKTLHDWYmiqagaadkdarnmkfsEELMGALIQAEISRTVGFTLGLTENLG 461
Cdd:cd04276    78 GP-----SVVDPRTGEILKADVILYSGFLRQDQLWY-----------------EDLLAASLRYLLAHEVGHTLGLRHNFK 135
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1821198309 462 SSYAIPLEKLRDKNWLANHPFNYSIMDYNHYNYVAQPADQVSRkgLIPQISDYDKWAIKWAYT 524
Cdd:cd04276   136 ASSDGSNEELEDPLGTKEKGATSSVMDYPPPNVAAQGEDQGDY--YPPTIGPYDKWAIEYGYT 196
DUF5118 pfam17162
Domain of unknown function (DUF5118); This domain falls upstream of a met-zincin domain.
37-86 1.86e-18

Domain of unknown function (DUF5118); This domain falls upstream of a met-zincin domain.


:

Pssm-ID: 435758  Cd Length: 50  Bit Score: 79.50  E-value: 1.86e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1821198309  37 LKPYNQVITAKSISKLGLFTVHKVDERYYFEIPDELLSREFLFTTRLSKV 86
Cdd:pfam17162   1 PKPYDKVIKKKAKTKKGLFTVHKKDDKYYFEIPDSLLGRDMLVVTRIAKT 50
 
Name Accession Description Interval E-value
DUF4953 pfam16313
Met-zincin; This is a family of uncharacterized proteins that carry the highly characteriztic ...
430-744 4.24e-102

Met-zincin; This is a family of uncharacterized proteins that carry the highly characteriztic met-zincin mmotif HExxHxxGxxH, the extended zinc-binding domain of metallopeptidases.


Pssm-ID: 435269  Cd Length: 319  Bit Score: 318.81  E-value: 4.24e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309 430 NMKFSEELMGALIQAEISRTVGFTLGLTENLGSSYAIPLEKLRDKNWLANHPFNYSIMDYNHYNYVAQPADQVSRKGLI- 508
Cdd:pfam16313   1 KMPFPDELMGALLRFVSAHEVGHTLGLRHNFAASSAYPVDSLRDKSFTRKYGTTPSIMDYARFNYVAQPEDQIDLSGLYp 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309 509 PQISDYDKWAIKWAYTNT-GATSFEADKKIRLGWIKnNLNANTNLIFASQPagikPTDITNPTAQWEDLSNNPVGAAAYG 587
Cdd:pfam16313  81 PGIGPYDKWAIEWGYRPFpDAKTPEEEKAALDKWAE-RSAGDPGLRFGTDQ----DARGADPRAQTEDLGDDAVKASEYG 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309 588 IKNLKYVMANLIPWTTTGEN-TYYNTSDLYYTLVSQYSFFMRYAFTQIGGVTENLKTVDQVGDVYVPVAKIIQKQAVAFL 666
Cdd:pfam16313 156 IKNLKRILPNLPEWTAEKEGeDYSDLEELYVPVLLQYRRYIGHVAKNIGGVYYNYKVRGDPGPVYTPVPKEKQKEALDFL 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309 667 NKEVFNTPNWILDPNVLNKFRK--PAKKEDVTKMQEDALFKLIDPNRLFRMNTATMRFGkDKTYTVDEMLTDLRSGLYAE 744
Cdd:pfam16313 236 LKQLFETPEWLLDPNLLNKTRGldFDPHDRVEALQSRVLSALLSPGRLNRLVEQEARDG-DKAYTLAELLDDLRKGIFKE 314
DUF5117 pfam17148
Domain of unknown function (DUF5117); This domain may fall upstream of a met-zincin domain.
95-298 2.84e-52

Domain of unknown function (DUF5117); This domain may fall upstream of a met-zincin domain.


Pssm-ID: 465363  Cd Length: 189  Bit Score: 180.50  E-value: 2.84e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309  95 GDLMNGIIVSFEKAAGDK-LFVRAITNVAQSDPSNE-LAKAVKNATIDPIIMVLDLKARSVDGKSSVVEMTDFFLKDN-L 171
Cdd:pfam17148   1 GDKVNEQVIRFEKGGNDKlLLLRNVSYRNVAPDSDAaIAKAVKNSNLDPILAAFDIKAYNKDSSAVVIDVTDFFNGDNkL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309 172 ISGFHPAAKKQMGTGAPAADRSAILGMEAYPNNIEVKSLKTYAlavaprpaaadgdspadaSAPAPSSVGVTFEISNSVM 251
Cdd:pfam17148  81 FSPLLPRSKNGLGLGSLDSDRSYIESIKAFPDNIEIRSVLTYT------------------VPGGSSSGPVTVEVNTSLV 142
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1821198309 252 VLPKEAMKIQAYDPRVGFKSDSYTVFSDAQQKVEERRFIIKNRLEVK 298
Cdd:pfam17148 143 LLPEEPMKPRLADPRVGYFTTSYTDFSDDQQKVETKRYITRWRLEPK 189
ZnMc_MMP_like_2 cd04276
Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase ...
308-524 2.99e-51

Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.


Pssm-ID: 239803  Cd Length: 197  Bit Score: 177.90  E-value: 2.99e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309 308 GELVEPKEPLVYYIDPATPKQYRKYMIAGINNWNEAFKAAGFKNAIIGKEWPVNDKSMDLedgRFRVIRYMP------AI 381
Cdd:cd04276     1 AALSEPKEPIVYYLDNTFPEKYRDAIREGVLYWNKAFEKAGFKNAIIVKVLPDDADPGDI---RYNVIRWIHspnggwAY 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309 382 SPfvdnnQVTDPRSGEIIQTYIGWSHSQVKTLHDWYmiqagaadkdarnmkfsEELMGALIQAEISRTVGFTLGLTENLG 461
Cdd:cd04276    78 GP-----SVVDPRTGEILKADVILYSGFLRQDQLWY-----------------EDLLAASLRYLLAHEVGHTLGLRHNFK 135
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1821198309 462 SSYAIPLEKLRDKNWLANHPFNYSIMDYNHYNYVAQPADQVSRkgLIPQISDYDKWAIKWAYT 524
Cdd:cd04276   136 ASSDGSNEELEDPLGTKEKGATSSVMDYPPPNVAAQGEDQGDY--YPPTIGPYDKWAIEYGYT 196
DUF5118 pfam17162
Domain of unknown function (DUF5118); This domain falls upstream of a met-zincin domain.
37-86 1.86e-18

Domain of unknown function (DUF5118); This domain falls upstream of a met-zincin domain.


Pssm-ID: 435758  Cd Length: 50  Bit Score: 79.50  E-value: 1.86e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1821198309  37 LKPYNQVITAKSISKLGLFTVHKVDERYYFEIPDELLSREFLFTTRLSKV 86
Cdd:pfam17162   1 PKPYDKVIKKKAKTKKGLFTVHKKDDKYYFEIPDSLLGRDMLVVTRIAKT 50
harvest_ssl1498 NF033486
ssl1498 family light-harvesting-like protein; Members of this family appear restricted to the ...
313-337 9.58e-03

ssl1498 family light-harvesting-like protein; Members of this family appear restricted to the Cyanobacteria, and include ssl1498 from Synechocystis sp. PCC 6803. These proteins are small, usually about 56 amino acids, with an N-terminal half related to a number of light-harvesting proteins, and a highly hydrophobic C-terminal half likely to be embedded in membrane.


Pssm-ID: 411129  Cd Length: 53  Bit Score: 35.20  E-value: 9.58e-03
                          10        20
                  ....*....|....*....|....*
gi 1821198309 313 PKEPLVYYIDPATPKQYRKYMIAGI 337
Cdd:NF033486   12 AVEPKMYYAEYPTPEQQRNYLLQGA 36
 
Name Accession Description Interval E-value
DUF4953 pfam16313
Met-zincin; This is a family of uncharacterized proteins that carry the highly characteriztic ...
430-744 4.24e-102

Met-zincin; This is a family of uncharacterized proteins that carry the highly characteriztic met-zincin mmotif HExxHxxGxxH, the extended zinc-binding domain of metallopeptidases.


Pssm-ID: 435269  Cd Length: 319  Bit Score: 318.81  E-value: 4.24e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309 430 NMKFSEELMGALIQAEISRTVGFTLGLTENLGSSYAIPLEKLRDKNWLANHPFNYSIMDYNHYNYVAQPADQVSRKGLI- 508
Cdd:pfam16313   1 KMPFPDELMGALLRFVSAHEVGHTLGLRHNFAASSAYPVDSLRDKSFTRKYGTTPSIMDYARFNYVAQPEDQIDLSGLYp 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309 509 PQISDYDKWAIKWAYTNT-GATSFEADKKIRLGWIKnNLNANTNLIFASQPagikPTDITNPTAQWEDLSNNPVGAAAYG 587
Cdd:pfam16313  81 PGIGPYDKWAIEWGYRPFpDAKTPEEEKAALDKWAE-RSAGDPGLRFGTDQ----DARGADPRAQTEDLGDDAVKASEYG 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309 588 IKNLKYVMANLIPWTTTGEN-TYYNTSDLYYTLVSQYSFFMRYAFTQIGGVTENLKTVDQVGDVYVPVAKIIQKQAVAFL 666
Cdd:pfam16313 156 IKNLKRILPNLPEWTAEKEGeDYSDLEELYVPVLLQYRRYIGHVAKNIGGVYYNYKVRGDPGPVYTPVPKEKQKEALDFL 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309 667 NKEVFNTPNWILDPNVLNKFRK--PAKKEDVTKMQEDALFKLIDPNRLFRMNTATMRFGkDKTYTVDEMLTDLRSGLYAE 744
Cdd:pfam16313 236 LKQLFETPEWLLDPNLLNKTRGldFDPHDRVEALQSRVLSALLSPGRLNRLVEQEARDG-DKAYTLAELLDDLRKGIFKE 314
DUF5117 pfam17148
Domain of unknown function (DUF5117); This domain may fall upstream of a met-zincin domain.
95-298 2.84e-52

Domain of unknown function (DUF5117); This domain may fall upstream of a met-zincin domain.


Pssm-ID: 465363  Cd Length: 189  Bit Score: 180.50  E-value: 2.84e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309  95 GDLMNGIIVSFEKAAGDK-LFVRAITNVAQSDPSNE-LAKAVKNATIDPIIMVLDLKARSVDGKSSVVEMTDFFLKDN-L 171
Cdd:pfam17148   1 GDKVNEQVIRFEKGGNDKlLLLRNVSYRNVAPDSDAaIAKAVKNSNLDPILAAFDIKAYNKDSSAVVIDVTDFFNGDNkL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309 172 ISGFHPAAKKQMGTGAPAADRSAILGMEAYPNNIEVKSLKTYAlavaprpaaadgdspadaSAPAPSSVGVTFEISNSVM 251
Cdd:pfam17148  81 FSPLLPRSKNGLGLGSLDSDRSYIESIKAFPDNIEIRSVLTYT------------------VPGGSSSGPVTVEVNTSLV 142
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1821198309 252 VLPKEAMKIQAYDPRVGFKSDSYTVFSDAQQKVEERRFIIKNRLEVK 298
Cdd:pfam17148 143 LLPEEPMKPRLADPRVGYFTTSYTDFSDDQQKVETKRYITRWRLEPK 189
ZnMc_MMP_like_2 cd04276
Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase ...
308-524 2.99e-51

Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.


Pssm-ID: 239803  Cd Length: 197  Bit Score: 177.90  E-value: 2.99e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309 308 GELVEPKEPLVYYIDPATPKQYRKYMIAGINNWNEAFKAAGFKNAIIGKEWPVNDKSMDLedgRFRVIRYMP------AI 381
Cdd:cd04276     1 AALSEPKEPIVYYLDNTFPEKYRDAIREGVLYWNKAFEKAGFKNAIIVKVLPDDADPGDI---RYNVIRWIHspnggwAY 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309 382 SPfvdnnQVTDPRSGEIIQTYIGWSHSQVKTLHDWYmiqagaadkdarnmkfsEELMGALIQAEISRTVGFTLGLTENLG 461
Cdd:cd04276    78 GP-----SVVDPRTGEILKADVILYSGFLRQDQLWY-----------------EDLLAASLRYLLAHEVGHTLGLRHNFK 135
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1821198309 462 SSYAIPLEKLRDKNWLANHPFNYSIMDYNHYNYVAQPADQVSRkgLIPQISDYDKWAIKWAYT 524
Cdd:cd04276   136 ASSDGSNEELEDPLGTKEKGATSSVMDYPPPNVAAQGEDQGDY--YPPTIGPYDKWAIEYGYT 196
ZnMc_MMP_like cd04268
Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix ...
314-523 2.79e-20

Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.


Pssm-ID: 239796 [Multi-domain]  Cd Length: 165  Bit Score: 88.71  E-value: 2.79e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309 314 KEPLVYYIDPATPKQYRKYMIAGINNWNEAFkAAGFKNAIIGkewpvndksmDLEDGRFRVIRYMPAISPFvdNN---QV 390
Cdd:cd04268     1 KKPITYYIDDSVPDKLRAAILDAIEAWNKAF-AIGFKNANDV----------DPADIRYSVIRWIPYNDGT--WSygpSQ 67
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821198309 391 TDPRSGEIiqtyigwshsqvktLHDWYMIQAGAAdkdarnmkfseELMGALIQAEISRTVGFTLGLTENLGSSYAIPLEK 470
Cdd:cd04268    68 VDPLTGEI--------------LLARVYLYSSFV-----------EYSGARLRNTAEHELGHALGLRHNFAASDRDDNVD 122
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1821198309 471 lrdknWLANHPFNYSIMDYNHYNYVAQPADqvsrkGLIPQISDYDKWAIKWAY 523
Cdd:cd04268   123 -----LLAEKGDTSSVMDYAPSNFSIQLGD-----GQKYTIGPYDIAAIKKLY 165
DUF5118 pfam17162
Domain of unknown function (DUF5118); This domain falls upstream of a met-zincin domain.
37-86 1.86e-18

Domain of unknown function (DUF5118); This domain falls upstream of a met-zincin domain.


Pssm-ID: 435758  Cd Length: 50  Bit Score: 79.50  E-value: 1.86e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1821198309  37 LKPYNQVITAKSISKLGLFTVHKVDERYYFEIPDELLSREFLFTTRLSKV 86
Cdd:pfam17162   1 PKPYDKVIKKKAKTKKGLFTVHKKDDKYYFEIPDSLLGRDMLVVTRIAKT 50
harvest_ssl1498 NF033486
ssl1498 family light-harvesting-like protein; Members of this family appear restricted to the ...
313-337 9.58e-03

ssl1498 family light-harvesting-like protein; Members of this family appear restricted to the Cyanobacteria, and include ssl1498 from Synechocystis sp. PCC 6803. These proteins are small, usually about 56 amino acids, with an N-terminal half related to a number of light-harvesting proteins, and a highly hydrophobic C-terminal half likely to be embedded in membrane.


Pssm-ID: 411129  Cd Length: 53  Bit Score: 35.20  E-value: 9.58e-03
                          10        20
                  ....*....|....*....|....*
gi 1821198309 313 PKEPLVYYIDPATPKQYRKYMIAGI 337
Cdd:NF033486   12 AVEPKMYYAEYPTPEQQRNYLLQGA 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH