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Conserved domains on  [gi|1818982414|gb|QII14622|]
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cytochrome b, partial (mitochondrion) [Irena puella]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-346 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 685.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   1 GSLLGACLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYGSYLNKETW 80
Cdd:MTH00119   35 GSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETW 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  81 NVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00119  115 NTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLT 194

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 161 LVHLTLLHETGSNNPLGIPADCDKIPFHPYYTTKDILGFALMFFSLAALALFSPNLLGDPENFTPANPLVTPPHIKPEWY 240
Cdd:MTH00119  195 LIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWY 274

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 241 FLFAYAILRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQVLFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00119  275 FLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQL 354

                         330       340
                  ....*....|....*....|....*.
gi 1818982414 321 ASFTYFTIILVLFPLASILENKLLNL 346
Cdd:MTH00119  355 ASILYFTILLILFPLLGALENKMLNY 380
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-346 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 685.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   1 GSLLGACLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYGSYLNKETW 80
Cdd:MTH00119   35 GSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETW 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  81 NVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00119  115 NTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLT 194

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 161 LVHLTLLHETGSNNPLGIPADCDKIPFHPYYTTKDILGFALMFFSLAALALFSPNLLGDPENFTPANPLVTPPHIKPEWY 240
Cdd:MTH00119  195 LIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWY 274

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 241 FLFAYAILRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQVLFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00119  275 FLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQL 354

                         330       340
                  ....*....|....*....|....*.
gi 1818982414 321 ASFTYFTIILVLFPLASILENKLLNL 346
Cdd:MTH00119  355 ASILYFTILLILFPLLGALENKMLNY 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-340 2.31e-125

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 365.27  E-value: 2.31e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   1 GSLLGACLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYGSY-----L 75
Cdd:COG1290    43 GELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreL 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  76 NketWNVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPF 154
Cdd:COG1290   123 N---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPA 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 155 VIAGLTLVHLTLLHETGSNNPLGI----PADCDKIPFHPYYTTKDILGFALMFFSLAALALFSPNllGDPENFTPANPLV 230
Cdd:COG1290   200 LLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLA 277

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 231 TPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQVLFWTLVANVLVLTWVGSQ 308
Cdd:COG1290   278 TPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGAN 357

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1818982414 309 PVehPFIIIGQLASFTYFTIILVLFPLASILE 340
Cdd:COG1290   358 PP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-173 1.59e-78

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 238.81  E-value: 1.59e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   1 GSLLGACLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYGSYLN--KE 78
Cdd:cd00284    26 GSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprEL 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  79 TWNVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAG 158
Cdd:cd00284   106 TWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAV 185

                         170
                  ....*....|....*
gi 1818982414 159 LTLVHLTLLHETGSN 173
Cdd:cd00284   186 IVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-171 8.18e-69

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 213.78  E-value: 8.18e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   1 GSLLGACLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYG--SYLNKE 78
Cdd:pfam00033  17 GSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPREL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  79 TWNVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAG 158
Cdd:pfam00033  97 TWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAI 176

                         170
                  ....*....|...
gi 1818982414 159 LTLVHLTLLHETG 171
Cdd:pfam00033 177 LMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 206-306 9.93e-12

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 62.51  E-value: 9.93e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 206 LAALALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLMPLLHT-SKLRSMTF 284
Cdd:TIGR01156  51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFR 125

                          90       100
                  ....*....|....*....|..
gi 1818982414 285 RPISQVLFwtlVANVLVLTWVG 306
Cdd:TIGR01156 126 RPVATTVF---LFGTVVALWLG 144
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-346 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 685.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   1 GSLLGACLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYGSYLNKETW 80
Cdd:MTH00119   35 GSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETW 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  81 NVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00119  115 NTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLT 194

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 161 LVHLTLLHETGSNNPLGIPADCDKIPFHPYYTTKDILGFALMFFSLAALALFSPNLLGDPENFTPANPLVTPPHIKPEWY 240
Cdd:MTH00119  195 LIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWY 274

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 241 FLFAYAILRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQVLFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00119  275 FLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQL 354

                         330       340
                  ....*....|....*....|....*.
gi 1818982414 321 ASFTYFTIILVLFPLASILENKLLNL 346
Cdd:MTH00119  355 ASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-345 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 636.69  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   1 GSLLGACLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYGSYLNKETW 80
Cdd:MTH00131   34 GSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETW 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  81 NVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00131  114 NIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAAT 193

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 161 LVHLTLLHETGSNNPLGIPADCDKIPFHPYYTTKDILGFALMFFSLAALALFSPNLLGDPENFTPANPLVTPPHIKPEWY 240
Cdd:MTH00131  194 ILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWY 273

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 241 FLFAYAILRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQVLFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00131  274 FLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQV 353

                         330       340
                  ....*....|....*....|....*
gi 1818982414 321 ASFTYFTIILVLFPLASILENKLLN 345
Cdd:MTH00131  354 ASVLYFSLFLVLMPLAGWLENKALE 378
CYTB MTH00100
cytochrome b; Provisional
 1-344 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 630.52  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   1 GSLLGACLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYGSYLNKETW 80
Cdd:MTH00100   34 GSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETW 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  81 NVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00100  114 NIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALA 193

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 161 LVHLTLLHETGSNNPLGIPADCDKIPFHPYYTTKDILGFALMFFSLAALALFSPNLLGDPENFTPANPLVTPPHIKPEWY 240
Cdd:MTH00100  194 MVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWY 273

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 241 FLFAYAILRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQVLFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00100  274 FLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQL 353

                         330       340
                  ....*....|....*....|....
gi 1818982414 321 ASFTYFTIILVLFPLASILENKLL 344
Cdd:MTH00100  354 ASILYFLIILILMPIASLIENNLL 377
CYTB MTH00074
cytochrome b; Provisional
 1-346 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 610.92  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   1 GSLLGACLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYGSYLNKETW 80
Cdd:MTH00074   35 GSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETW 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  81 NVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00074  115 NIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGAS 194

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 161 LVHLTLLHETGSNNPLGIPADCDKIPFHPYYTTKDILGFALMFFSLAALALFSPNLLGDPENFTPANPLVTPPHIKPEWY 240
Cdd:MTH00074  195 IIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWY 274

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 241 FLFAYAILRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQVLFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00074  275 FLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQA 354

                         330       340
                  ....*....|....*....|....*.
gi 1818982414 321 ASFTYFTIILVLFPLASILENKLLNL 346
Cdd:MTH00074  355 ASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 1-335 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 586.50  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   1 GSLLGACLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYGSYLNKETW 80
Cdd:MTH00191   31 GSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETW 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  81 NVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00191  111 NVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALS 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 161 LVHLTLLHETGSNNPLGIPADCDKIPFHPYYTTKDILGFALMFFSLAALALFSPNLLGDPENFTPANPLVTPPHIKPEWY 240
Cdd:MTH00191  191 LIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWY 270

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 241 FLFAYAILRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQVLFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00191  271 FLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQI 350

                         330
                  ....*....|....*
gi 1818982414 321 ASFTYFTIILVLFPL 335
Cdd:MTH00191  351 SSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-333 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 568.26  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   1 GSLLGACLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYGSYLNKETW 80
Cdd:MTH00156   24 GSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTW 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  81 NVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00156  104 MSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMV 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 161 LVHLTLLHETGSNNPLGIPADCDKIPFHPYYTTKDILGFALMFFSLAALALFSPNLLGDPENFTPANPLVTPPHIKPEWY 240
Cdd:MTH00156  184 MIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWY 263

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 241 FLFAYAILRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQVLFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00156  264 FLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQI 343

                         330
                  ....*....|...
gi 1818982414 321 ASFTYFTIILVLF 333
Cdd:MTH00156  344 LTILYFLYFIINP 356
CYTB MTH00034
cytochrome b; Validated
 1-345 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 562.79  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   1 GSLLGACLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYGSYLNKETW 80
Cdd:MTH00034   34 GSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETW 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  81 NVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00034  114 NIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALS 193

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 161 LVHLTLLHETGSNNPLGIPADCDKIPFHPYYTTKDILGFALMFFSLAALALFSPNLLGDPENFTPANPLVTPPHIKPEWY 240
Cdd:MTH00034  194 IIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWY 273

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 241 FLFAYAILRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQVLFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00034  274 FLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQV 353

                         330       340
                  ....*....|....*....|....*
gi 1818982414 321 ASFTYFTIILVLFPLASILENKLLN 345
Cdd:MTH00034  354 ASVLYFSLFLFFFPLISYLENKLIF 378
CYTB MTH00145
cytochrome b; Provisional
 1-344 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 562.22  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   1 GSLLGACLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYGSYLNKETW 80
Cdd:MTH00145   35 GSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTW 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  81 NVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00145  115 NIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLS 194

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 161 LVHLTLLHETGSNNPLGIPADCDKIPFHPYYTTKDILGFALMFFSLAALALFSPNLLGDPENFTPANPLVTPPHIKPEWY 240
Cdd:MTH00145  195 VLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWY 274

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 241 FLFAYAILRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQVLFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00145  275 FLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQV 354

                         330       340
                  ....*....|....*....|....
gi 1818982414 321 ASFTYFTIILVLfPLASILENKLL 344
Cdd:MTH00145  355 FTVLYFLFFLIL-PLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-344 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 528.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   1 GSLLGACLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYGSYLNKETW 80
Cdd:MTH00016   35 GSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETW 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  81 NVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00016  115 NIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALS 194

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 161 LVHLTLLHETGSNNPLGIPADCDKIPFHPYYTTKDILGFALMFFSLAALALFSPNLLGDPENFTPANPLVTPPHIKPEWY 240
Cdd:MTH00016  195 MIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWY 274

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 241 FLFAYAILRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQVLFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00016  275 FLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQI 354

                         330       340
                  ....*....|....*....|....
gi 1818982414 321 ASFTYFTiILVLFPLASILENKLL 344
Cdd:MTH00016  355 FTVFYFF-YFMINPLLMKLWDKLL 377
CYTB MTH00022
cytochrome b; Validated
 1-345 1.03e-171

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 482.28  E-value: 1.03e-171
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   1 GSLLGACLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYGSYLNKETW 80
Cdd:MTH00022   33 GSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVW 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  81 NVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00022  113 NVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLV 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 161 LVHLTLLHETGSNNPLGIPADCDKIPFHPYYTTKDILGFALMFFSLAALALFSPNLLGDPENFTPANPLVTPPHIKPEWY 240
Cdd:MTH00022  193 IVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWY 272

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 241 FLFAYAILRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQVLFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00022  273 FLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQL 352

                         330       340
                  ....*....|....*....|....*
gi 1818982414 321 ASFTYFTIILVLFPLASILENKLLN 345
Cdd:MTH00022  353 LSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00053
cytochrome b; Provisional
 1-346 2.17e-169

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 476.51  E-value: 2.17e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   1 GSLLGACLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYGSYLNKETW 80
Cdd:MTH00053   35 GSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVW 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  81 NVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00053  115 NVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLA 194

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 161 LVHLTLLHETGSNNPLGIPADCDKIPFHPYYTTKDILGFALMFFSLAALALFSPNLLGDPENFTPANPLVTPPHIKPEWY 240
Cdd:MTH00053  195 LVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWY 274

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 241 FLFAYAILRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQVLFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00053  275 FLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQI 354

                         330       340
                  ....*....|....*....|....*.
gi 1818982414 321 ASFTYFTIILVLFPLASILENKLLNL 346
Cdd:MTH00053  355 ASIFYFAYFLILMPLAGYLENKLLKL 380
CYTB MTH00224
cytochrome b; Provisional
 1-345 8.45e-159

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 449.76  E-value: 8.45e-159
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   1 GSLLGACLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYGSYLNKETW 80
Cdd:MTH00224   35 GSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETW 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  81 NVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00224  115 NIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGAT 194

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 161 LVHLTLLHETGSNNPLGIPADCDKIPFHPYYTTKDILGFALMFFSLAALALFSPNLLGDPENFTPANPLVTPPHIKPEWY 240
Cdd:MTH00224  195 ILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWY 274

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 241 FLFAYAILRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQVLFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00224  275 FLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQV 354

                         330       340
                  ....*....|....*....|....*
gi 1818982414 321 ASFTYFTiILVLFPLASILENKLLN 345
Cdd:MTH00224  355 FTILYFS-YFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-341 3.95e-128

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 371.96  E-value: 3.95e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   1 GSLLGACLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYGSYLNKETW 80
Cdd:MTH00033   31 GSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTW 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  81 NVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00033  111 IVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLV 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 161 LVHLTLLHETGSNNPLGIPADCDKIPFHPYYTTKDILGFALMFFSLAALALFS--PNLLGDPENFTPANPLVTPPHIKPE 238
Cdd:MTH00033  191 LAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPE 270

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 239 WYFLFAYAILRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQVLFWTLVANVLVLTWVGSQPV-EHPFIII 317
Cdd:MTH00033  271 WYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLI 350

                         330       340
                  ....*....|....*....|....
gi 1818982414 318 GQLASFTYFTIILVLFPLASILEN 341
Cdd:MTH00033  351 GRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-340 2.31e-125

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 365.27  E-value: 2.31e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   1 GSLLGACLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYGSY-----L 75
Cdd:COG1290    43 GELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreL 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  76 NketWNVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPF 154
Cdd:COG1290   123 N---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPA 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 155 VIAGLTLVHLTLLHETGSNNPLGI----PADCDKIPFHPYYTTKDILGFALMFFSLAALALFSPNllGDPENFTPANPLV 230
Cdd:COG1290   200 LLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLA 277

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 231 TPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQVLFWTLVANVLVLTWVGSQ 308
Cdd:COG1290   278 TPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGAN 357

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1818982414 309 PVehPFIIIGQLASFTYFTIILVLFPLASILE 340
Cdd:COG1290   358 PP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 1-333 2.75e-109

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 322.66  E-value: 2.75e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   1 GSLLGACLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYGSYLNKETW 80
Cdd:MTH00086   23 GSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVW 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  81 NVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00086  103 ISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLV 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 161 LVHLTLLHETGSNNPLGIPADCDKIPFHPYYTTKDILGFaLMFFSLAALALFSPNLLGDPENFTPANPLVTPPHIKPEWY 240
Cdd:MTH00086  183 LFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWY 261

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 241 FLFAYAILRSIPNKLGGVLALAASILVLFLMPLLHTSklrSMTFRPISQVLFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00086  262 FLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQI 338

                         330
                  ....*....|...
gi 1818982414 321 ASFTYFTIILVLF 333
Cdd:MTH00086  339 FSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 1-323 1.84e-83

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 256.83  E-value: 1.84e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   1 GSLLGACLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYGSYLNKETW 80
Cdd:MTH00046   25 GFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVW 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  81 NVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00046  105 NVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLM 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 161 LVHLTLLHETGSNNPLGIPAD-CDKIPFHPYYTTKDILGFALMFFSLAALALFSPNLLGDPENFTPANPLVTPPHIKPEW 239
Cdd:MTH00046  185 VVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEW 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 240 YFLFAYAILRSIPNKLGGvLALAASILVLFLMPLLHTSKLRSMtfrpISQVLFWTLVANVLVLTWVGSQPVEHPFIIIGQ 319
Cdd:MTH00046  265 YFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQ 339


                  ....
gi 1818982414 320 LASF 323
Cdd:MTH00046  340 LFSV 343
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-173 1.59e-78

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 238.81  E-value: 1.59e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   1 GSLLGACLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYGSYLN--KE 78
Cdd:cd00284    26 GSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprEL 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  79 TWNVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAG 158
Cdd:cd00284   106 TWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAV 185

                         170
                  ....*....|....*
gi 1818982414 159 LTLVHLTLLHETGSN 173
Cdd:cd00284   186 IVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-171 8.18e-69

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 213.78  E-value: 8.18e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   1 GSLLGACLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYG--SYLNKE 78
Cdd:pfam00033  17 GSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPREL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  79 TWNVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAG 158
Cdd:pfam00033  97 TWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAI 176

                         170
                  ....*....|...
gi 1818982414 159 LTLVHLTLLHETG 171
Cdd:pfam00033 177 LMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 174-321 2.55e-57

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 182.85  E-value: 2.55e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 174 NPLGIPADCDKIPFHPYYTTKDILGFALMFFSLAALALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 253
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1818982414 254 KLGGVLALAASILVLFLMPLLHTSKLRSmTFRPISQVLFWTLVANVLVLTWVGSQPVEHPFIIIGQLA 321
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
225-325 8.98e-50

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 161.49  E-value: 8.98e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 225 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQVLFWTLVANVLVLTW 304
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1818982414 305 VGSQPVEHPFIIIGQLASFTY 325
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
55-220 5.31e-40

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 138.91  E-value: 5.31e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  55 SFFFICIYLHIGRGIYYGSYLNKE--TWNVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 132
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 133 GGFSVDNPTLTRFFALHF-LLPFVIAGLTLVHLTLLHETGSNNPLGIPADCDKIPFHPYYTTKDILGFALMFFSLAALAL 211
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1818982414 212 FSPNLLGDP 220
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 1-176 1.03e-33

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 124.05  E-value: 1.03e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   1 GSLLGACLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYGSYLNKE-- 78
Cdd:PRK03735   45 GGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRel 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414  79 TWNVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIA 157
Cdd:PRK03735  125 NWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALA 204

                         170
                  ....*....|....*....
gi 1818982414 158 GLTLVHLTLLHETGSNNPL 176
Cdd:PRK03735  205 VLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 7-157 1.45e-29

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 112.89  E-value: 1.45e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414   7 CLITQIVTGLLLAMHYTADTALAFSSVAHMCRDVQFGWLIRNIHANGASFFFICIYLHIGRGIYYGSYLNKE--TWNVGV 84
Cdd:CHL00070   43 CFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGV 122

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1818982414  85 ILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIA 157
Cdd:CHL00070  123 VLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTA 196
petD CHL00058
cytochrome b6/f complex subunit IV
 196-306 1.42e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 64.64  E-value: 1.42e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 196 ILGfalMFFSLAALALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLMPLL- 274
Cdd:CHL00058   44 ILG---TIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLe 115

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1818982414 275 HTSKLRSMTFRPISQVLFwtlVANVLVLTWVG 306
Cdd:CHL00058  116 NVNKFQNPFRRPVATTVF---LIGTAVALWLG 144
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 203-306 1.58e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 64.81  E-value: 1.58e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 203 FFSLAALALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLMPLLHT-SKLRS 281
Cdd:COG5679    49 IALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQN 123

                          90       100
                  ....*....|....*....|....*
gi 1818982414 282 MTFRPISQVLFwtlVANVLVLTWVG 306
Cdd:COG5679   124 PFRRPVATAVF---LFGTLVTLWLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 206-306 9.93e-12

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 62.51  E-value: 9.93e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982414 206 LAALALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLMPLLHT-SKLRSMTF 284
Cdd:TIGR01156  51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFR 125

                          90       100
                  ....*....|....*....|..
gi 1818982414 285 RPISQVLFwtlVANVLVLTWVG 306
Cdd:TIGR01156 126 RPVATTVF---LFGTVVALWLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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