NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1812582405|gb|QID58142|]
View 

DNA polymerase, partial [Adenovirus PREDICT_AdV-38]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DNA_pol_B_2 super family cl44393
DNA polymerase type B, organellar and viral; Like pfam00136, members of this family are also ...
 1-90 2.94e-22

DNA polymerase type B, organellar and viral; Like pfam00136, members of this family are also DNA polymerase type B proteins. Those included here are found in plant and fungal mitochondria, and in viruses.


The actual alignment was detected with superfamily member pfam03175:

Pssm-ID: 367375 [Multi-domain]  Cd Length: 455  Bit Score: 88.56  E-value: 2.94e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812582405   1 ASALTH-PMPTGAPlnTFERALMVRIYEKKLkqkEPINYFDKDLLPAIFTIDADPPAENMLDvlpplCSRRGGRLCWTNQ 79
Cdd:pfam03175 233 PSAMKHyPMPYGKP--PYEEGLYIKDFQYPL---DKFGFFDAKIKPPIFTIDYIPPLPIRLD-----CSRKGGRLIWPNG 302

                          90
                  ....*....|.
gi 1812582405  80 RLRGEVVTSID 90
Cdd:pfam03175 303 ELRGEWYTSEE 313
 
Name Accession Description Interval E-value
DNA_pol_B_2 pfam03175
DNA polymerase type B, organellar and viral; Like pfam00136, members of this family are also ...
 1-90 2.94e-22

DNA polymerase type B, organellar and viral; Like pfam00136, members of this family are also DNA polymerase type B proteins. Those included here are found in plant and fungal mitochondria, and in viruses.


Pssm-ID: 367375 [Multi-domain]  Cd Length: 455  Bit Score: 88.56  E-value: 2.94e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812582405   1 ASALTH-PMPTGAPlnTFERALMVRIYEKKLkqkEPINYFDKDLLPAIFTIDADPPAENMLDvlpplCSRRGGRLCWTNQ 79
Cdd:pfam03175 233 PSAMKHyPMPYGKP--PYEEGLYIKDFQYPL---DKFGFFDAKIKPPIFTIDYIPPLPIRLD-----CSRKGGRLIWPNG 302

                          90
                  ....*....|.
gi 1812582405  80 RLRGEVVTSID 90
Cdd:pfam03175 303 ELRGEWYTSEE 313
 
Name Accession Description Interval E-value
DNA_pol_B_2 pfam03175
DNA polymerase type B, organellar and viral; Like pfam00136, members of this family are also ...
 1-90 2.94e-22

DNA polymerase type B, organellar and viral; Like pfam00136, members of this family are also DNA polymerase type B proteins. Those included here are found in plant and fungal mitochondria, and in viruses.


Pssm-ID: 367375 [Multi-domain]  Cd Length: 455  Bit Score: 88.56  E-value: 2.94e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812582405   1 ASALTH-PMPTGAPlnTFERALMVRIYEKKLkqkEPINYFDKDLLPAIFTIDADPPAENMLDvlpplCSRRGGRLCWTNQ 79
Cdd:pfam03175 233 PSAMKHyPMPYGKP--PYEEGLYIKDFQYPL---DKFGFFDAKIKPPIFTIDYIPPLPIRLD-----CSRKGGRLIWPNG 302

                          90
                  ....*....|.
gi 1812582405  80 RLRGEVVTSID 90
Cdd:pfam03175 303 ELRGEWYTSEE 313
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH