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Conserved domains on  [gi|1812385366|gb|QID48493|]
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cytochrome b [Yunnantettix bannaensis]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 651.08  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  12 IKVINHSLIDLPTPKNISLWWNMGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLIRSIHMNGASMM 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  92 FICIYLHVGRGLYYESFYLKETWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNKIVQWIWGGFAV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 172 DNPTLSRFFSIHFILPFIIMMMTMMHLIFLHQTGSNNPLGIKSNQEKIPFHPYFSFKDSITMLFTILMLSMISTQSPYIL 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 252 GDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALLMSIAILMIMPFYKKSSFQGLQFCPLNQMMFWTLVV 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1812385366 332 TVTMLTWIGKQPVENPYIMSGQILTLLYFAYFMLN 366
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 651.08  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  12 IKVINHSLIDLPTPKNISLWWNMGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLIRSIHMNGASMM 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  92 FICIYLHVGRGLYYESFYLKETWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNKIVQWIWGGFAV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 172 DNPTLSRFFSIHFILPFIIMMMTMMHLIFLHQTGSNNPLGIKSNQEKIPFHPYFSFKDSITMLFTILMLSMISTQSPYIL 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 252 GDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALLMSIAILMIMPFYKKSSFQGLQFCPLNQMMFWTLVV 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1812385366 332 TVTMLTWIGKQPVENPYIMSGQILTLLYFAYFMLN 366
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-376 1.38e-122

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 359.49  E-value: 1.38e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  12 IKVINHSLIDLPTPKNISLWWNMGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLIRSIHMNGASMM 91
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  92 FICIYLHVGRGLYYESFylKE----TWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNKIVQWIWG 167
Cdd:COG1290   100 FAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 168 GFAVDNPTLSRFFSIH-FILPFIIMMMTMMHLIFLHQTGSNNPLGIKSNQEK----IPFHPYFSFKDSITMLFTILMLSM 242
Cdd:COG1290   178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPYYTVKDGFGFFVFLGVFAL 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 243 ISTQSPyiLGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIP--NKLGGVIALLMSIAILMIMPFYKKSSFQGLQFCP 320
Cdd:COG1290   258 LAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1812385366 321 LNQMMFWTLVVTVTMLTWIGKQPVenPYIMSGQILTLLYFAYFMLNSWISTMWSKL 376
Cdd:COG1290   336 VRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIEKT 389
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 3.77e-87

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 261.92  E-value: 3.77e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  10 PLIKVINHSLIDLPTPKNISLWWNMGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLIRSIHMNGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  90 MMFICIYLHVGRGLYYESFY--LKETWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNKIVQWIWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1812385366 168 GFAVDNPTLSRFFSIHFILPFIIMMMTMMHLIFLHQTGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 9.21e-79

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 240.36  E-value: 9.21e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  19 LIDLPTPKNISLWWNMGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLIRSIHMNGASMMFICIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  99 VGRGLYYESFY--LKETWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNKIVQWIWGGFAVDNPTL 176
Cdd:pfam00033  81 IFRGLYYGGFSypRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1812385366 177 SRFFSIHFILPFIIMMMTMMHLIFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 231-307 3.86e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.19  E-value: 3.86e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1812385366 231 ITMLFTILMLSMISTQSPYILGDPdnfipANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALLMSIAILMIMPF 307
Cdd:TIGR01156  42 VVILGTIACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPF 113
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 651.08  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  12 IKVINHSLIDLPTPKNISLWWNMGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLIRSIHMNGASMM 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  92 FICIYLHVGRGLYYESFYLKETWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNKIVQWIWGGFAV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 172 DNPTLSRFFSIHFILPFIIMMMTMMHLIFLHQTGSNNPLGIKSNQEKIPFHPYFSFKDSITMLFTILMLSMISTQSPYIL 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 252 GDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALLMSIAILMIMPFYKKSSFQGLQFCPLNQMMFWTLVV 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1812385366 332 TVTMLTWIGKQPVENPYIMSGQILTLLYFAYFMLN 366
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 601.51  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366   1 MYTPLRKTHPLIKVINHSLIDLPTPKNISLWWNMGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLI 80
Cdd:MTH00145    1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  81 RSIHMNGASMMFICIYLHVGRGLYYESFYLKETWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNK 160
Cdd:MTH00145   81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 161 IVQWIWGGFAVDNPTLSRFFSIHFILPFIIMMMTMMHLIFLHQTGSNNPLGIKSNQEKIPFHPYFSFKDSITMLFTILML 240
Cdd:MTH00145  161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 241 SMISTQSPYILGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALLMSIAILMIMPFYKKSSFQGLQFCP 320
Cdd:MTH00145  241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1812385366 321 LNQMMFWTLVVTVTMLTWIGKQPVENPYIMSGQILTLLYFAYFMLNSWISTMWSKLI 377
Cdd:MTH00145  321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNIL 377
CYTB MTH00119
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 599.96  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366   1 MYTPLRKTHPLIKVINHSLIDLPTPKNISLWWNMGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLI 80
Cdd:MTH00119    1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  81 RSIHMNGASMMFICIYLHVGRGLYYESFYLKETWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNK 160
Cdd:MTH00119   81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 161 IVQWIWGGFAVDNPTLSRFFSIHFILPFIIMMMTMMHLIFLHQTGSNNPLGIKSNQEKIPFHPYFSFKDSITMLFTILML 240
Cdd:MTH00119  161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 241 SMISTQSPYILGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALLMSIAILMIMPFYKKSSFQGLQFCP 320
Cdd:MTH00119  241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1812385366 321 LNQMMFWTLVVTVTMLTWIGKQPVENPYIMSGQILTLLYFA-YFMLNSWISTMWSKLIK 378
Cdd:MTH00119  321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTiLLILFPLLGALENKMLN 379
CYTB MTH00131
cytochrome b; Provisional
 5-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 597.40  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366   5 LRKTHPLIKVINHSLIDLPTPKNISLWWNMGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLIRSIH 84
Cdd:MTH00131    4 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  85 MNGASMMFICIYLHVGRGLYYESFYLKETWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNKIVQW 164
Cdd:MTH00131   84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 165 IWGGFAVDNPTLSRFFSIHFILPFIIMMMTMMHLIFLHQTGSNNPLGIKSNQEKIPFHPYFSFKDSITMLFTILMLSMIS 244
Cdd:MTH00131  164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLA 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 245 TQSPYILGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALLMSIAILMIMPFYKKSSFQGLQFCPLNQM 324
Cdd:MTH00131  244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQF 323

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1812385366 325 MFWTLVVTVTMLTWIGKQPVENPYIMSGQILTLLYFAYFML 365
Cdd:MTH00131  324 LFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLV 364
CYTB MTH00191
cytochrome b; Provisional
 5-369 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 592.66  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366   5 LRKTHPLIKVINHSLIDLPTPKNISLWWNMGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLIRSIH 84
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  85 MNGASMMFICIYLHVGRGLYYESFYLKETWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNKIVQW 164
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 165 IWGGFAVDNPTLSRFFSIHFILPFIIMMMTMMHLIFLHQTGSNNPLGIKSNQEKIPFHPYFSFKDSITMLFTILMLSMIS 244
Cdd:MTH00191  161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 245 TQSPYILGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALLMSIAILMIMPFYKKSSFQGLQFCPLNQM 324
Cdd:MTH00191  241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1812385366 325 MFWTLVVTVTMLTWIGKQPVENPYIMSGQILTLLYFAYFMLNSWI 369
Cdd:MTH00191  321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00074
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 591.27  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366   1 MYTPLRKTHPLIKVINHSLIDLPTPKNISLWWNMGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLI 80
Cdd:MTH00074    1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  81 RSIHMNGASMMFICIYLHVGRGLYYESFYLKETWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNK 160
Cdd:MTH00074   81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 161 IVQWIWGGFAVDNPTLSRFFSIHFILPFIIMMMTMMHLIFLHQTGSNNPLGIKSNQEKIPFHPYFSFKDSITMLFTILML 240
Cdd:MTH00074  161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 241 SMISTQSPYILGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALLMSIAILMIMPFYKKSSFQGLQFCP 320
Cdd:MTH00074  241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1812385366 321 LNQMMFWTLVVTVTMLTWIGKQPVENPYIMSGQILTLLYFAYFMLNSWISTMW-SKLIK 378
Cdd:MTH00074  321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLeNKLLK 379
CYTB MTH00100
cytochrome b; Provisional
 3-361 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 579.67  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366   3 TPLRKTHPLIKVINHSLIDLPTPKNISLWWNMGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLIRS 82
Cdd:MTH00100    2 TNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRY 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  83 IHMNGASMMFICIYLHVGRGLYYESFYLKETWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNKIV 162
Cdd:MTH00100   82 LHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLV 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 163 QWIWGGFAVDNPTLSRFFSIHFILPFIIMMMTMMHLIFLHQTGSNNPLGIKSNQEKIPFHPYFSFKDSITMLFTILMLSM 242
Cdd:MTH00100  162 EWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLML 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 243 ISTQSPYILGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALLMSIAILMIMPFYKKSSFQGLQFCPLN 322
Cdd:MTH00100  242 LVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLS 321

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1812385366 323 QMMFWTLVVTVTMLTWIGKQPVENPYIMSGQILTLLYFA 361
Cdd:MTH00100  322 QCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFL 360
CYTB MTH00016
cytochrome b; Validated
 1-378 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 573.93  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366   1 MYTPLRKTHPLIKVINHSLIDLPTPKNISLWWNMGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLI 80
Cdd:MTH00016    1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  81 RSIHMNGASMMFICIYLHVGRGLYYESFYLKETWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNK 160
Cdd:MTH00016   81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 161 IVQWIWGGFAVDNPTLSRFFSIHFILPFIIMMMTMMHLIFLHQTGSNNPLGIKSNQEKIPFHPYFSFKDSITMLFTILML 240
Cdd:MTH00016  161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 241 SMISTQSPYILGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALLMSIAILMIMPFYKKSSFQGLQFCP 320
Cdd:MTH00016  241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1812385366 321 LNQMMFWTLVVTVTMLTWIGKQPVENPYIMSGQILTLLYFAYFMLNSWISTMWSKLIK 378
Cdd:MTH00016  321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLLK 378
CYTB MTH00034
cytochrome b; Validated
 4-365 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 548.54  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366   4 PLRKTHPLIKVINHSLIDLPTPKNISLWWNMGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLIRSI 83
Cdd:MTH00034    3 PLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNI 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  84 HMNGASMMFICIYLHVGRGLYYESFYLKETWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNKIVQ 163
Cdd:MTH00034   83 HANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQ 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 164 WIWGGFAVDNPTLSRFFSIHFILPFIIMMMTMMHLIFLHQTGSNNPLGIKSNQEKIPFHPYFSFKDSITMLFTILMLSMI 243
Cdd:MTH00034  163 WIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 244 STQSPYILGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALLMSIAILMIMPFYKKSSFQGLQFCPLNQ 323
Cdd:MTH00034  243 ALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQ 322

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1812385366 324 MMFWTLVVTVTMLTWIGKQPVENPYIMSGQILTLLYFAYFML 365
Cdd:MTH00034  323 IAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLF 364
CYTB MTH00224
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 511.00  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366   1 MYTPLRKTHPLIKVINHSLIDLPTPKNISLWWNMGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLI 80
Cdd:MTH00224    1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  81 RSIHMNGASMMFICIYLHVGRGLYYESFYLKETWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNK 160
Cdd:MTH00224   81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 161 IVQWIWGGFAVDNPTLSRFFSIHFILPFIIMMMTMMHLIFLHQTGSNNPLGIKSNQEKIPFHPYFSFKDSITMLFTILML 240
Cdd:MTH00224  161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 241 SMISTQSPYILGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALLMSIAILMIMPFYKKSSFQGLQFCP 320
Cdd:MTH00224  241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1812385366 321 LNQMMFWTLVVTVTMLTWIGKQPVENPYIMSGQILTLLYFAYFMLNSWISTMWSKLIK 378
Cdd:MTH00224  321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLLN 378
CYTB MTH00022
cytochrome b; Validated
 4-365 8.97e-174

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 488.83  E-value: 8.97e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366   4 PLRKTHPLIKVINHSLIDLPTPKNISLWWNMGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLIRSI 83
Cdd:MTH00022    2 PLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  84 HMNGASMMFICIYLHVGRGLYYESFYLKETWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNKIVQ 163
Cdd:MTH00022   82 HANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQ 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 164 WIWGGFAVDNPTLSRFFSIHFILPFIIMMMTMMHLIFLHQTGSNNPLGIKSNQEKIPFHPYFSFKDSITMLFTILMLSMI 243
Cdd:MTH00022  162 WVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFI 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 244 STQSPYILGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALLMSIAILMIMPFYKKSSFQGLQFCPLNQ 323
Cdd:MTH00022  242 VYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGR 321

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1812385366 324 MMFWTLVVTVTMLTWIGKQPVENPYIMSGQILTLLYFAYFML 365
Cdd:MTH00022  322 MAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLV 363
CYTB MTH00053
cytochrome b; Provisional
 1-378 1.24e-167

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 473.42  E-value: 1.24e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366   1 MYTPLRKTHPLIKVINHSLIDLPTPKNISLWWNMGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLI 80
Cdd:MTH00053    1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  81 RSIHMNGASMMFICIYLHVGRGLYYESFYLKETWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNK 160
Cdd:MTH00053   81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 161 IVQWIWGGFAVDNPTLSRFFSIHFILPFIIMMMTMMHLIFLHQTGSNNPLGIKSNQEKIPFHPYFSFKDSITMLFTILML 240
Cdd:MTH00053  161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 241 SMISTQSPYILGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALLMSIAILMIMPFYKKSSFQGLQFCP 320
Cdd:MTH00053  241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1812385366 321 LNQMMFWTLVVTVTMLTWIGKQPVENPYIMSGQILTLLYFAYFM-LNSWISTMWSKLIK 378
Cdd:MTH00053  321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLiLMPLAGYLENKLLK 379
CYTB MTH00033
cytochrome b; Provisional
 5-365 6.83e-131

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 380.05  E-value: 6.83e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366   5 LRKTHPLIKVinHSLIDLPTPKNISLWWNMGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLIRSIH 84
Cdd:MTH00033    3 LRKTGLLEPV--NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  85 MNGASMMFICIYLHVGRGLYYESFYLKETWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNKIVQW 164
Cdd:MTH00033   81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 165 IWGGFAVDNPTLSRFFSIHFILPFIIMMMTMMHLIFLHQTGSNNPLGIKSNQEKIPFHPYFSFKD--SITMLFTILMLSM 242
Cdd:MTH00033  161 IWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDilGFLILFGVFVIIG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 243 ISTQSPYILGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALLMSIAILMIMPFYKKSSFQGLQFCPLN 322
Cdd:MTH00033  241 IEPRIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTG 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1812385366 323 QMMFWTLVVTVTMLTWIGKQPV-ENPYIMSGQILTLLYFAYFML 365
Cdd:MTH00033  321 KFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
CYTB MTH00086
cytochrome b; Provisional
 15-365 4.41e-127

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 369.27  E-value: 4.41e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  15 INHSLIDLPTPKNISLWWNMGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLIRSIHMNGASMMFIC 94
Cdd:MTH00086    3 VNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  95 IYLHVGRGLYYESFYLKETWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNKIVQWIWGGFAVDNP 174
Cdd:MTH00086   83 LYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSA 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 175 TLSRFFSIHFILPFIIMMMTMMHLIFLHQTGSNNPLGIKSNQEKIPFHPYFSFKDSITMLFtILMLSMISTQSPYILGDP 254
Cdd:MTH00086  163 TLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIF-WLVFIIFSLFYPFNLGDP 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 255 DNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALLMSIAILMIMPFYKkssFQGLQFCPLNQMMFWTLVVTVT 334
Cdd:MTH00086  242 EMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN---NYTSCLNKLNKFLVFSFIVVNV 318

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1812385366 335 MLTWIGKQPVENPYIMSGQILTLLYFAYFML 365
Cdd:MTH00086  319 ILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-376 1.38e-122

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 359.49  E-value: 1.38e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  12 IKVINHSLIDLPTPKNISLWWNMGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLIRSIHMNGASMM 91
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  92 FICIYLHVGRGLYYESFylKE----TWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNKIVQWIWG 167
Cdd:COG1290   100 FAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 168 GFAVDNPTLSRFFSIH-FILPFIIMMMTMMHLIFLHQTGSNNPLGIKSNQEK----IPFHPYFSFKDSITMLFTILMLSM 242
Cdd:COG1290   178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPYYTVKDGFGFFVFLGVFAL 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 243 ISTQSPyiLGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIP--NKLGGVIALLMSIAILMIMPFYKKSSFQGLQFCP 320
Cdd:COG1290   258 LAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1812385366 321 LNQMMFWTLVVTVTMLTWIGKQPVenPYIMSGQILTLLYFAYFMLNSWISTMWSKL 376
Cdd:COG1290   336 VRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIEKT 389
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 3.77e-87

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 261.92  E-value: 3.77e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  10 PLIKVINHSLIDLPTPKNISLWWNMGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLIRSIHMNGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  90 MMFICIYLHVGRGLYYESFY--LKETWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNKIVQWIWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1812385366 168 GFAVDNPTLSRFFSIHFILPFIIMMMTMMHLIFLHQTGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 11-358 1.21e-84

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 261.07  E-value: 1.21e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  11 LIKVINHSLIDLPTPKNISLWWNMGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLIRSIHMNGASM 90
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  91 MFICIYLHVGRGLYYESFYLKETWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNKIVQWIWGGFA 170
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 171 VDNPTLSRFFSIHFILPFIIMMMTMMHLIFLHQTGSNNPLGIKSN-QEKIPFHPYFSFKDSITMLFTILMLSMISTQSPY 249
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 250 ILGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIaLLMSIAILMIMPFYKKSSFQGLqfcpLNQMMFWTL 329
Cdd:MTH00046  241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLI 315

                         330       340
                  ....*....|....*....|....*....
gi 1812385366 330 VVTVTMLTWIGKQPVENPYIMSGQILTLL 358
Cdd:MTH00046  316 VSLFFSLSYLGGCHPEYPYLLISQLFSVL 344
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 9.21e-79

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 240.36  E-value: 9.21e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  19 LIDLPTPKNISLWWNMGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLIRSIHMNGASMMFICIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  99 VGRGLYYESFY--LKETWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNKIVQWIWGGFAVDNPTL 176
Cdd:pfam00033  81 IFRGLYYGGFSypRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1812385366 177 SRFFSIHFILPFIIMMMTMMHLIFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-354 2.00e-47

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 158.19  E-value: 2.00e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 208 NPLGIKSNQEKIPFHPYFSFKDSITMLFTILMLSMISTQSPYILGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPN 287
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1812385366 288 KLGGVIALLMSIAILMIMPFYKKSSFQGlQFCPLNQMMFWTLVVTVTMLTWIGKQPVENPYIMSGQI 354
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 1.75e-41

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 141.08  E-value: 1.75e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 259 PANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALLMSIAILMIMPFYKKSSFQGLQFCPLNQMMFWTLVVTVTMLTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1812385366 339 IGKQPVENPYIMSGQILTLLY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 1.25e-40

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 141.22  E-value: 1.25e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  89 SMMFICIYLHVGRGLYYESFYLKE--TWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNKIVQWIW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 167 GGFAVDNPTLSRFFSIHF-ILPFIIMMMTMMHLIFLHQTGSNNPLGIKSNQEKIPFHPYFSFKDSITMLFTILMLSMIST 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1812385366 246 QSPYILGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 34-210 5.12e-39

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 138.69  E-value: 5.12e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  34 MGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLIRSIHMNGASMMFICIYLHVGRgLYYESFYLKE- 112
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLR-VFFTGGYKKPr 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 113 --TWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNKIVQWIWGGFAVDNPTLSRFFSIH-FILPFI 189
Cdd:PRK03735  123 elNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWA 202

                         170       180
                  ....*....|....*....|.
gi 1812385366 190 IMMMTMMHLIFLHQTGSNNPL 210
Cdd:PRK03735  203 LAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 25-210 6.00e-33

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 122.52  E-value: 6.00e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366  25 PKNISLWWNMGSLLGMCLVIQTLTGLFLAMHYTADIESAFKSTIHICRDVNNGWLIRSIHMNGASMMFICIYLHVGRgLY 104
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR-VY 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385366 105 YESFYLKE---TWLVGSIIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYVGNKIVQWIWGGFAVDNPTLSRFFS 181
Cdd:CHL00070  106 LTGGFKKPrelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYS 185

                         170       180       190
                  ....*....|....*....|....*....|
gi 1812385366 182 IH-FILPFIIMMMTMMHLIFLHQTGSNNPL 210
Cdd:CHL00070  186 LHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 231-307 3.39e-10

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 58.09  E-value: 3.39e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1812385366 231 ITMLFTILMLSMISTQSPYILGDPdnfipANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALLMSIAILMIMPF 307
Cdd:CHL00058   42 VVILGTIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPF 113
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 231-307 3.86e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.19  E-value: 3.86e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1812385366 231 ITMLFTILMLSMISTQSPYILGDPdnfipANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALLMSIAILMIMPF 307
Cdd:TIGR01156  42 VVILGTIACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPF 113
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 231-307 4.17e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 55.18  E-value: 4.17e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1812385366 231 ITMLFTILMLSMISTQSPYILGDPdnfipANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALLMSIAILMIMPF 307
Cdd:COG5679    43 VVILGTIALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPF 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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