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Conserved domains on  [gi|1812385339|gb|QID48468|]
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NADH dehydrogenase subunit 6 [Systolederus spicupennis]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 15-164 4.69e-25

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 94.10  E-value: 4.69e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385339  15 FMMSKQPMNMIIIMVIQASVMTYMMNMMSKSSWMMYLMMIIFIGGMMVLFIYITSIVPNEMNKLNMKLMITMIIMtamvF 94
Cdd:MTH00166   15 FLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLKLLILFLLM----L 90

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385339  95 MTMNNNYLMNNETMMNSLMNLNMTHQKMLNLMFNKPMFKMSIMMMMYLFIALMAVNKISNIEMGPLRKKN 164
Cdd:MTH00166   91 LLMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 15-164 4.69e-25

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 94.10  E-value: 4.69e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385339  15 FMMSKQPMNMIIIMVIQASVMTYMMNMMSKSSWMMYLMMIIFIGGMMVLFIYITSIVPNEMNKLNMKLMITMIIMtamvF 94
Cdd:MTH00166   15 FLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLKLLILFLLM----L 90

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385339  95 MTMNNNYLMNNETMMNSLMNLNMTHQKMLNLMFNKPMFKMSIMMMMYLFIALMAVNKISNIEMGPLRKKN 164
Cdd:MTH00166   91 LLMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 15-164 4.69e-25

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 94.10  E-value: 4.69e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385339  15 FMMSKQPMNMIIIMVIQASVMTYMMNMMSKSSWMMYLMMIIFIGGMMVLFIYITSIVPNEMNKLNMKLMITMIIMtamvF 94
Cdd:MTH00166   15 FLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLKLLILFLLM----L 90

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385339  95 MTMNNNYLMNNETMMNSLMNLNMTHQKMLNLMFNKPMFKMSIMMMMYLFIALMAVNKISNIEMGPLRKKN 164
Cdd:MTH00166   91 LLMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKGPLRSKN 160
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 27-163 9.67e-05

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 40.37  E-value: 9.67e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385339  27 IMVIQASVMTYMMNMMSKSSWMMYLMMIIFIGGMMVLFIYITSIVPNE--MNKLNMKLMITMIIMTAMVFMTMNNNYlmn 104
Cdd:MTH00212   28 VSLLLSSLLSCLIITMESNSWYGYILFLIYIGGLLVLFGYMVALSPNEhlFFKKYFKGFGMILISLNLYLLLMTLGS--- 104

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1812385339 105 netmMNSLMNLNMTHQKMLNLMFNKPMFKMSIMMMMYLFIALMAVNKISNIEMGPLRKK 163
Cdd:MTH00212  105 ----SNFSPMLNLKLELNVSKILSNNNIPILLFLGLILLIALLMVVKICQYYKGPLRPF 159
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 15-161 3.56e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 36.02  E-value: 3.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812385339  15 FMMSKQPMNMIIIMVIQASVMTYMMNMMSkSSWMMYLMMIIFIGGMMVLFIYITSIVPNEMNKLNMKLMITMIIMTAMVF 94
Cdd:MTH00152   17 LPLSKQPLSLGLVLLLLSLFVCVEIGLTL-SSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGSNFKFVFFSLTLFGFLG 95

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1812385339  95 MTMNNNYLMNNETMMNSLMNLNMTHQKML-NLMFNKPMFKMSIMMMMYLFIALMAVNKISNIEMGPLR 161
Cdd:MTH00152   96 LFFFFLYLYSSGGLSLSSLFDGSSGSLSFgGGLYSSSGWSIFVFLAVLLLIVMVSVVKICYYEEGSLR 163
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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