|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-340 |
3.99e-86 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 262.84 E-value: 3.99e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 1 MTINLKKTLFLSSLMMGSMISISSNTWLGIWMGLEMNLLSFIPLMVNEKNLMMNESSIKYFIVQVVASAMLLFSILMIVM 80
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 81 KIPVGWekegMIPSMMISSSLLIKVGAAPFHLWFPEVMKTSSWINCMILMTWQKIAPMVVLSYCIgKTMFTLATSVSSII 160
Cdd:MTH00160 81 NLMLFN----NISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI-NNNFIIIIIILSAI 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 161 LGAIGGLYQTSIRQVMAYSSISHLGWMISSMLISELMWEFYFIIYSTLSSVMVLMFNQSKLYNIGQLFTLSSYSIESKFI 240
Cdd:MTH00160 156 IGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 241 IIISMLSLGGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILTSINIYYYMRISFASIILNSNESMWSANIKPKTFKVVI 320
Cdd:MTH00160 236 LFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLIL 315
|
330 340
....*....|....*....|
gi 1812094806 321 PMMAIISSLGLVSTTSLISY 340
Cdd:MTH00160 316 NFLSFISLFGLILSSLLFLL 335
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-283 |
1.15e-26 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 106.63 E-value: 1.15e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 24 SNTWLGIWMGLEMNLLSFIPLM-VNEKNLMMNESSIKYFIVQVVASAMLLFSILMI-----------VMKIPVGWEKEG- 90
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdeLSKALTGGLNSSg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 91 -MIPSMMISSSLLIKVGAAPFHLWFPEVMKTSSWINCMIL-MTWQKIAPMVVL-------SYCIGKTMFTLATSVSSIIL 161
Cdd:pfam00361 81 lLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 162 GAIGGLYQTSIRQVMAYSSISHLGWMISSMLISELM----WEFYFIIYSTLSSVMVLMFN-----QSKLYNIGQLFTLSS 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAGsviyrRVHTRNIRDYGGLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1812094806 233 YSIESKFIIIISMLSLGGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILT 283
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
8-293 |
5.03e-25 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 104.81 E-value: 5.03e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 8 TLFLSSLMmGSMISISSNTWLGIWMGLEmnLLSfIPLMV----NEKNLMMNESSIKYFIVQVVASAMLLFSILM------ 77
Cdd:COG1007 106 ALLLFATL-GMMLMASANDLLTLFLGLE--LLS-LSLYVlvafRRDDRRSSEAALKYFLLGALSSGFLLYGISLlygatg 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 78 ------IVMKIPVGWEKEGM--IPSMMISSSLLIKVGAAPFHLWFPEVMKTSSWINCMILMTWQKIAPMVVLSYCIGKTM 149
Cdd:COG1007 182 slnlagIAAALAAGGANSPLllLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAF 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 150 FTLAT---------SVSSIILGAIGGLYQTSIRQVMAYSSISHLGWMI------SSMLISELMweFYFIIYS--TLSSVM 212
Cdd:COG1007 262 PGLAAdwqlllavlAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLlglaagTPLGVSAAL--FYLLAYLfmNLGAFA 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 213 VLMFNQSKLYNIGQLFTLSSYSIESK---FIIIISMLSLGGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILTSINIYY 289
Cdd:COG1007 340 VILLLSRKGGEAEEIEDLAGLARRSPllaLAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYY 419
|
....
gi 1812094806 290 YMRI 293
Cdd:COG1007 420 YLRV 423
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
17-293 |
3.43e-22 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 96.94 E-value: 3.43e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 17 GSMISISSNTWLGIWMGLEMNLLSFIPLM-VNEKNLMMNESSIKYFIVQVVASAMLLFSILMI-----------VMKIPV 84
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAgLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgslnfedLLLFLS 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 85 GWEKEGMIPSM---MISSSLLIKVGAAPFHLWFPEVMKTSSWINCMILMTWQKIAPMVVL----SYCIGK-----TMFTL 152
Cdd:TIGR01770 194 NGMLNISLLLLgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlfLYILFGfseawQIFLA 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 153 ATSVSSIILGAIGGLYQTSIRQVMAYSSISHLGWMISSMLISELMWE----FYFIIYSTLS----SVMVLMFNQSK---- 220
Cdd:TIGR01770 274 IIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkavlFYIFIYALMSlgafGVLSLLRSYKDewie 353
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1812094806 221 -LYNIGQLFTLSSYSiesKFIIIISMLSLGGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILTSINIYYYMRI 293
Cdd:TIGR01770 354 yISDFAGLFKTNPIL---AILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-340 |
3.99e-86 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 262.84 E-value: 3.99e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 1 MTINLKKTLFLSSLMMGSMISISSNTWLGIWMGLEMNLLSFIPLMVNEKNLMMNESSIKYFIVQVVASAMLLFSILMIVM 80
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 81 KIPVGWekegMIPSMMISSSLLIKVGAAPFHLWFPEVMKTSSWINCMILMTWQKIAPMVVLSYCIgKTMFTLATSVSSII 160
Cdd:MTH00160 81 NLMLFN----NISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI-NNNFIIIIIILSAI 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 161 LGAIGGLYQTSIRQVMAYSSISHLGWMISSMLISELMWEFYFIIYSTLSSVMVLMFNQSKLYNIGQLFTLSSYSIESKFI 240
Cdd:MTH00160 156 IGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 241 IIISMLSLGGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILTSINIYYYMRISFASIILNSNESMWSANIKPKTFKVVI 320
Cdd:MTH00160 236 LFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLIL 315
|
330 340
....*....|....*....|
gi 1812094806 321 PMMAIISSLGLVSTTSLISY 340
Cdd:MTH00160 316 NFLSFISLFGLILSSLLFLL 335
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
8-331 |
3.13e-61 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 199.30 E-value: 3.13e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 8 TLFLSSLMMGSMISISSNTWLGIWMGLEMNLLSFIPLMVNEKNLMMNESSIKYFIVQVVASAMLLFSILM--------IV 79
Cdd:MTH00105 7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIInlmysgqwTI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 80 MKIPvgwekeGMIPSMMISSSLLIKVGAAPFHLWFPEVMKTSSWINCMILMTWQKIAPMVVLsYCIGKTM---FTLATSV 156
Cdd:MTH00105 87 TKLT------NPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSIL-YQISPSInpnLLLTLAI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 157 SSIILGAIGGLYQTSIRQVMAYSSISHLGWMISSMLISELMWEFYFIIYSTLSSVMVLMFNQSKLYNIGQLFTLSSYSIE 236
Cdd:MTH00105 160 LSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 237 SKFIIIISMLSLGGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILTSINIYYYMRISFASII-----LNSNESMWS-AN 310
Cdd:MTH00105 240 MTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLtmfpsTNNMKMKWQfEN 319
|
330 340
....*....|....*....|.
gi 1812094806 311 IKPKTFkvvIPMMAIISSLGL 331
Cdd:MTH00105 320 TKPMTL---LPTLIILSTMLL 337
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
7-341 |
6.35e-61 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 198.51 E-value: 6.35e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 7 KTLFLSSLMMGSMISISSNTWLGIWMGLEMNLLSFIPLMVNEKNLMMNESSIKYFIVQVVASAMLLFSILMIVMKIPvGW 86
Cdd:MTH00112 6 KLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTG-QW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 87 EKEGM---IPSMMISSSLLIKVGAAPFHLWFPEVMKTSSWINCMILMTWQKIAPMVVLSYCIGKTMFTLATSVS--SIIL 161
Cdd:MTH00112 85 DITQLtnpTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAilSTLI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 162 GAIGGLYQTSIRQVMAYSSISHLGWMISSMLISELMWEFYFIIYSTLSSVMVLMFNQSKLYNIGQLFTLSSYSIESKFII 241
Cdd:MTH00112 165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 242 IISMLSLGGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILTSINIYYYMRISFASIIL---NSNESMWSANIKPKTFKv 318
Cdd:MTH00112 245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITlppNTTNMMMKWRTKPKKNT- 323
|
330 340
....*....|....*....|...
gi 1812094806 319 VIPMMAIISSLGLVSTTSLISYF 341
Cdd:MTH00112 324 LTATLTTLSTLLLPLSPMILTII 346
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
8-341 |
3.78e-59 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 193.99 E-value: 3.78e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 8 TLFLSSLMMGSMISISSNTWLGIWMGLEMNLLSFIPLMVNEKNLMMNESSIKYFIVQVVASAMLLFSILMIVMKIPvGW- 86
Cdd:MTH00041 7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSG-SWs 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 87 --EKEGMIPSMMISSSLLIKVGAAPFHLWFPEVMKTSSWINCMILMTWQKIAPMVVLSYCIGKTMFTLAT--SVSSIILG 162
Cdd:MTH00041 86 inGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILIlcGILSVLVG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 163 AIGGLYQTSIRQVMAYSSISHLGWMISSMLISELMWEFYFIIYSTLSSVMVLMFNQSKLYNIGQLFTLSSYSIESKFIII 242
Cdd:MTH00041 166 GWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFI 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 243 ISMLSLGGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILTSINIYYYMRISF-ASIILNSNESM----WSANIKPKTFK 317
Cdd:MTH00041 246 LSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFnTSLTLFPQHSIslfsWRNSGNITVYG 325
|
330 340
....*....|....*....|....
gi 1812094806 318 VVIPMMAIISSLGLVSTTSLISYF 341
Cdd:MTH00041 326 VILSILSSISILGLLLIPLFLSFL 349
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
8-341 |
3.34e-57 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 188.98 E-value: 3.34e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 8 TLFLSSLMMGSMISISSNTWLGIWMGLEMNLLSFIPLMVNEKNLMMNESSIKYFIVQVVASAMLLFSILM---------- 77
Cdd:MTH00070 7 SILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTInawftgewti 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 78 IVMKIPvgwekegmIPSMMISSSLLIKVGAAPFHLWFPEVMKTSSWINCMILMTWQKIAPMVVL---SYCIGKTMFTLAt 154
Cdd:MTH00070 87 MNMQTP--------LPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLiqiSHLLNSNLLIIM- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 155 SVSSIILGAIGGLYQTSIRQVMAYSSISHLGWMISSMLISELMWEFYFIIYSTLSSVMVLMFNQSKLYNIGQLFTLSSYS 234
Cdd:MTH00070 158 GLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKN 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 235 IESKFIIIISMLSLGGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILTSINIYYYMRISFASIILNS-----NESMWSA 309
Cdd:MTH00070 238 PTLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSpntsnSKLYWRF 317
|
330 340 350
....*....|....*....|....*....|..
gi 1812094806 310 NIKPKTFkvvIPMMAIISSLGLVSTTSLISYF 341
Cdd:MTH00070 318 KNKTNNL---LSLTIILSLMLLPITPTILNLF 346
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
8-296 |
1.55e-54 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 181.93 E-value: 1.55e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 8 TLFLSSLMMGSMISISSNTWLGIWMGLEMNLLSFIPLMVNEKNLMMNESSIKYFIVQVVASAMLLFSIlMIVMKIPVGWE 87
Cdd:MTH00135 7 TILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFAS-TTNAWLTGQWD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 88 KEGM---IPSMMISSSLLIKVGAAPFHLWFPEVMKTSSWINCMILMTWQKIAPMVVLsYCIGKTMFTLATS--VSSIILG 162
Cdd:MTH00135 86 IQQMshpLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALI-LQIAPTNPTLLITlgLTSTLVG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 163 AIGGLYQTSIRQVMAYSSISHLGWMISSMLISELMWEFYFIIYSTLSSVMVLMFNQSKLYNIGQLFTLSSYSIESKFIII 242
Cdd:MTH00135 165 GWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTP 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1812094806 243 ISMLSLGGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILTSINIYYYMRISFA 296
Cdd:MTH00135 245 LILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYA 298
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
8-341 |
1.81e-51 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 174.00 E-value: 1.81e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 8 TLFLSSLMMGSMISISSNTWLGIWMGLEMNLLSFIPLMVNEKNLMMNESSIKYFIVQVVASAMLLFSILMIVMKIPVG-- 85
Cdd:MTH00200 7 PLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWgi 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 86 WEKEGMIPSMMISSSLLIKVGAAPFHLWFPEVMKTSSWINCMILMTWQKIAPMVVLS--YCIGKTMFTLATSVSSIILGA 163
Cdd:MTH00200 87 SEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIqlAPALNSNILLLLGLLSVLVGG 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 164 IGGLYQTSIRQVMAYSSISHLGWMISSMLISELMWEFYFIIYSTLSSVMVLMFNQSKLYNIGQLFTLSSYSIESKFIIII 243
Cdd:MTH00200 167 WGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 244 SMLSLGGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILTSINIYYYMRISFASIILNSNESMWSANIKPKTFKVVIPMM 323
Cdd:MTH00200 247 TLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVG 326
|
330 340
....*....|....*....|
gi 1812094806 324 AII--SSLGLVSTTSLISYF 341
Cdd:MTH00200 327 LLLllSILGLPLTPQLLFLF 346
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
9-334 |
4.29e-50 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 169.85 E-value: 4.29e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 9 LFLSSLMMGSMISISSNTWLGIWMGLEMNLLSFIPLMVNEKNLMMNESSIKYFIVQVVASAMLLFSILMIVMKIPVGwek 88
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLS--- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 89 egMIPSMMISSSLLIKVGAAPFHLWFPEVMKTSSWINCMILMTWQKIAPMVVLSYCIGKTMFTLATSVSSIILGAIGGLY 168
Cdd:MTH00197 79 --LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMN 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 169 QTSIRQVMAYSSISHLGWMISSMLISELMWEFYFIIYSTLSSVMVLMFNQSKLYNIGQLFTLSSYSIESKFIIIISMLSL 248
Cdd:MTH00197 157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 249 GGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILTSINIYYYMRISFASIILNSNESMWSANIKPKTFKVVIPMMAIISS 328
Cdd:MTH00197 237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMMMLPL 316
|
....*.
gi 1812094806 329 LGLVST 334
Cdd:MTH00197 317 LMIFTM 322
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
9-332 |
6.86e-50 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 169.30 E-value: 6.86e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 9 LFLSSLMMGSMISISSNTWLGIWMGLEMNLLSFIPLMVNEKNLMMNESSIKYFIVQVVASAMLLFSILMivmkipVGWEK 88
Cdd:MTH00144 8 LFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLI------MYNLS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 89 EGMIPSMMISSSLLIKVGAAPFHLWFPEVMKTSSWINCMILMTWQKIAPMVVLSYCI---GKTMFTLATSVSSIILGAIG 165
Cdd:MTH00144 82 FSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLdlyWLAYLLCVISVLSALVGSIG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 166 GLYQTSIRQVMAYSSISHLGWMISSMLISELMWEFYFIIYSTLSSVMVLMFNQSKLYNIGQLFTLSSYSIESkFIIIISM 245
Cdd:MTH00144 162 GLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTG-LSIISLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 246 LSLGGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILTSINIYYYMRISFASIIlnsnesMWSANIKPKTFKVVIPMMAI 325
Cdd:MTH00144 241 LSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL------SSSKSKKSNSSKVLNSSIIS 314
|
....*..
gi 1812094806 326 ISSLGLV 332
Cdd:MTH00144 315 LNLLGGL 321
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
9-329 |
7.06e-50 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 169.19 E-value: 7.06e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 9 LFLSSLMMGSMISISSNTWLGIWMGLEMNLLSFIPLMVNEKNLMMNESSIKYFIVQVVASAMLLFSILMIVMKipvgWEK 88
Cdd:MTH00011 10 LFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSF----PSL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 89 EGMIPSMMISSSLLIKVGAAPFHLWFPEVMKTSSWINCMILMTWQKIAPMVVLSYCIGKTMFTLATSVS--SIILGAIGG 166
Cdd:MTH00011 86 LKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAamSALAGGLGG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 167 LYQTSIRQVMAYSSISHLGWMISSMLISELMWEFYFIIYSTLSSVMVLMFNQSKLYNIGQLFTLSSYSIESKFIIIISML 246
Cdd:MTH00011 166 MNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLL 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 247 SLGGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILTSINIYYYMRISFASIILNSNESMWSANIKPKTFKVVIPMMAII 326
Cdd:MTH00011 246 SLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKTKILISMCTLS 325
|
...
gi 1812094806 327 SSL 329
Cdd:MTH00011 326 LGL 328
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-283 |
1.15e-26 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 106.63 E-value: 1.15e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 24 SNTWLGIWMGLEMNLLSFIPLM-VNEKNLMMNESSIKYFIVQVVASAMLLFSILMI-----------VMKIPVGWEKEG- 90
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdeLSKALTGGLNSSg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 91 -MIPSMMISSSLLIKVGAAPFHLWFPEVMKTSSWINCMIL-MTWQKIAPMVVL-------SYCIGKTMFTLATSVSSIIL 161
Cdd:pfam00361 81 lLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 162 GAIGGLYQTSIRQVMAYSSISHLGWMISSMLISELM----WEFYFIIYSTLSSVMVLMFN-----QSKLYNIGQLFTLSS 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAGsviyrRVHTRNIRDYGGLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1812094806 233 YSIESKFIIIISMLSLGGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILT 283
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
8-293 |
5.03e-25 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 104.81 E-value: 5.03e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 8 TLFLSSLMmGSMISISSNTWLGIWMGLEmnLLSfIPLMV----NEKNLMMNESSIKYFIVQVVASAMLLFSILM------ 77
Cdd:COG1007 106 ALLLFATL-GMMLMASANDLLTLFLGLE--LLS-LSLYVlvafRRDDRRSSEAALKYFLLGALSSGFLLYGISLlygatg 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 78 ------IVMKIPVGWEKEGM--IPSMMISSSLLIKVGAAPFHLWFPEVMKTSSWINCMILMTWQKIAPMVVLSYCIGKTM 149
Cdd:COG1007 182 slnlagIAAALAAGGANSPLllLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAF 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 150 FTLAT---------SVSSIILGAIGGLYQTSIRQVMAYSSISHLGWMI------SSMLISELMweFYFIIYS--TLSSVM 212
Cdd:COG1007 262 PGLAAdwqlllavlAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLlglaagTPLGVSAAL--FYLLAYLfmNLGAFA 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 213 VLMFNQSKLYNIGQLFTLSSYSIESK---FIIIISMLSLGGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILTSINIYY 289
Cdd:COG1007 340 VILLLSRKGGEAEEIEDLAGLARRSPllaLAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYY 419
|
....
gi 1812094806 290 YMRI 293
Cdd:COG1007 420 YLRV 423
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
8-293 |
1.68e-24 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 103.36 E-value: 1.68e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 8 TLFLSSLMmGSMISISSNTWLGIWMGLE-MNLLSFIPLMVNEKNLMMNESSIKYFIVQVVASAMLLFSILMI-------- 78
Cdd:PRK05777 107 LLVLFALL-GMMVMVSANDLLTLFLGLElLSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLygatgsls 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 79 VMKIPVGWEKEGMIPSM------MISSSLLIKVGAAPFHLWFPEVMKTSSWINCMILMTWQKIAPMV----VLSYCIGKT 148
Cdd:PRK05777 186 FAGIAKALADGSGNSLLllfglvFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAvllrLLVVAFGGL 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 149 MFTLAT-----SVSSIILGAIGGLYQTSIRQVMAYSSISHLGWMI------SSMLISELMweFYFIIY--STLSSVMVLM 215
Cdd:PRK05777 266 SEDWQQvlaiiAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLvglaagTAEGYSAVL--FYLLAYlfMTLGAFGVIS 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 216 FNQSKLYNIGQLFTLSSYSIESK---FIIIISMLSLGGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILTSINIYYYMR 292
Cdd:PRK05777 344 LLRRKGGEAESISDFAGLSKRSPllaAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLR 423
|
.
gi 1812094806 293 I 293
Cdd:PRK05777 424 V 424
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
16-293 |
4.83e-24 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 100.88 E-value: 4.83e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 16 MGSMISISSNTWLGIWMGLEMNLLSFIPLMVNEKN-LMMNESSIKYFIVQVVASAMLLFS---------------ILMIV 79
Cdd:MTH00196 4 LGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGsGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlsyINLVL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 80 MKIPVGWEKEGMIPSMMISSSLLIKVGAAPFHLWFPEVMKTSSWINCMILMTWQKIAPMVVLSYCIGKTMFTLATSVSSI 159
Cdd:MTH00196 84 NSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLFSL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 160 ILGAIGGLYQTSIRQVMAYSSISHLGWMISSMLI-------SELMWEFYFIIYSTLSSVMVLMFNqsklYNIGQLFTLSS 232
Cdd:MTH00196 164 FVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfesiqASLVYLFIYIIMSICVFSIILALN----VYKNLIIEFSG 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1812094806 233 YSIESKFIII---ISMLSLGGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILTSINIYYYMRI 293
Cdd:MTH00196 240 LSRRLPILAItlaLTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
17-293 |
3.43e-22 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 96.94 E-value: 3.43e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 17 GSMISISSNTWLGIWMGLEMNLLSFIPLM-VNEKNLMMNESSIKYFIVQVVASAMLLFSILMI-----------VMKIPV 84
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAgLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgslnfedLLLFLS 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 85 GWEKEGMIPSM---MISSSLLIKVGAAPFHLWFPEVMKTSSWINCMILMTWQKIAPMVVL----SYCIGK-----TMFTL 152
Cdd:TIGR01770 194 NGMLNISLLLLgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlfLYILFGfseawQIFLA 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 153 ATSVSSIILGAIGGLYQTSIRQVMAYSSISHLGWMISSMLISELMWE----FYFIIYSTLS----SVMVLMFNQSK---- 220
Cdd:TIGR01770 274 IIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkavlFYIFIYALMSlgafGVLSLLRSYKDewie 353
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1812094806 221 -LYNIGQLFTLSSYSiesKFIIIISMLSLGGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILTSINIYYYMRI 293
Cdd:TIGR01770 354 yISDFAGLFKTNPIL---AILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
16-293 |
6.84e-22 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 95.85 E-value: 6.84e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 16 MGSMISISSNTWLGIWMGLEMNLLS-FIPLMVNEKNLMMNESSIKYFIVQVVASAMLLF------------SILMIVMKI 82
Cdd:MTH00199 108 LGSLLLVSSINWLSIYLAIELQTLTlFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFgcallygltgetSIQGINSIL 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 83 PVGWEKegmipsMMISSSLLIKVGAAPFHLWFPEVMKTSSWINCMILMTWQKIAPMVVLSYCIGKTMFTLATSVSSIILG 162
Cdd:MTH00199 188 TGDVGK------ILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYG 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 163 AIGGLYQTSIRQVMAYSSISHLGWMISSMLI-------SELMWEFYFIIYSTLSSVMVLMFNQSKlyniGQLFTLSSYSI 235
Cdd:MTH00199 262 AIGALNQTKIKRLLAYSGIGHMGFILFGVAIgsfesiqASLIYMIIYVIMSICSFSIILSLKLTK----GLIVEVSGLSR 337
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1812094806 236 ESKFI---IIISMLSLGGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILTSINIYYYMRI 293
Cdd:MTH00199 338 KNPVIaltLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
16-301 |
1.59e-18 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 86.45 E-value: 1.59e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 16 MGSMISISSNTWLGIWMGLEMNLLSFIPL---------MVNEKNLMMNESSIKYFIVQVVASAMLLF------------- 73
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILagegsqpgsHFPSPGNTPPESGLKYWILGAMSSGFYLFgcalyfgftgneg 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 74 ---SILMIVMKIPVGWEKEGMIPSMMISSSLLIKVGAAPFHLWFPEVMKTSSWINCMILMTWQKIAPMVVLSYCIGKTMF 150
Cdd:MTH00198 279 mlgTILSATLETTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKL 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 151 TLATSVSSIILGAIGGLYQTSIRQVMAYSSISHLGWM---ISSMLISELMWEF-YFIIY--STLSSVMVLMF-------- 216
Cdd:MTH00198 359 LLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIligVSAGTYESLQASWtYAVTYlvSALASFTVICTleefgtrt 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 217 -----NQSKLYNIGQLFTLSSYSIESK------FIIIISMLSLGGMPPLLGFLPKWLIVQTMLENGMTSTVSI------- 278
Cdd:MTH00198 439 ptsrqRDGSFGNYNLVRRLVDLTILSRgqpyiaFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIyylvalf 518
|
330 340
....*....|....*....|...
gi 1812094806 279 MVILTSINIYYYMRIsFASIILN 301
Cdd:MTH00198 519 AIICTCISAFYYIRI-VATIYFN 540
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
10-293 |
7.95e-14 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 71.72 E-value: 7.95e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 10 FLSSLMMGSMISISSNTWLGIWMGLEMNLLSFIPLMVNEKNLMMNESSIKYFIVQVVASAMLLFSILMI----------- 78
Cdd:COG0651 112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLygatgtlnmad 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 79 -VMKIPVGWEKEGMIPSMMISSSLLIKVGAAPFHLWFPEVMKTSS----------WINCM---ILMTWQKIAPMVVLSYc 144
Cdd:COG0651 192 lAARLAELDPGLLLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPspvsallsglLTKVGvyaILRVLTLLFGADPALF- 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 145 IGKTMFTLAtsVSSIILGAIGGLYQTSIRQVMAYSSISHLGWMISSM-LISELMWE--FYFIIYSTLssVMVLMF----- 216
Cdd:COG0651 271 LGTLLLVLG--LLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLgLGTPLGLAgaLFHLLNHAL--AKALLFlaaga 346
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1812094806 217 --NQSKLYNIGQLFTLSSYSIESKFIIIISMLSLGGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILTSINIYYYMRI 293
Cdd:COG0651 347 ieRATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
54-293 |
1.77e-09 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 58.91 E-value: 1.77e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 54 NESSIKYFIVQVVASAMLLF--SIL-----------MIVMKIPVGWEKEGMIPSMMISSSLLIKVGAAPFHLWFPEVMKT 120
Cdd:PRK02504 160 NEAALKYLLIGAASSAIFLYgsSLLyglsggstqlsAIALALITSPSLGLALALVFVIAGIAFKISAVPFHQWTPDVYEG 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 121 SSWINCMILMTWQKIAPMVV----LSYCIG------KTMFTlATSVSSIILGAIGGLYQTSIRQVMAYSSISHLGW-MI- 188
Cdd:PRK02504 240 SPTPVVAFLSVGSKAAGFALairlLVTAFPsfdeqwKLLFT-ALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFvMIg 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 189 ---------SSMLISELMW------EFYFIIYSTLSSVMVLMFNQSKLYNIGQLFTLSsysieskfiIIISMLSLGGMPP 253
Cdd:PRK02504 319 lvagteagyASMVFYLLAYlfmnlgAFACVILFSLRTGTDQISDYAGLYQKDPLLTLG---------LSLCLLSLGGIPP 389
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1812094806 254 LLGFLPKWLIVQTMLENGMTSTVSIMVILTSINIYYYMRI 293
Cdd:PRK02504 390 LAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRV 429
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
9-293 |
2.72e-08 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 55.01 E-value: 2.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 9 LFLSSLMMGSMISISSNTWLGIWMGLE-MNLLSFIPLMVNEKNLMMNESSIKYFIVQVVASAMLL--FSIL-------MI 78
Cdd:CHL00049 115 LFVLTATLGGMFLCGANDLITIFVALEcLSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVygFSWLyglsggeIE 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 79 VMKIPVGWEKEGMIPSMMISSSLL-------IKVGAAPFHLWFPEVMKTSSWINCMILMTWQKIAPMVVLSYCIGKTMFT 151
Cdd:CHL00049 195 LQEIVNGLINTQMYNSPGISIALIfitvgigFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFYF 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 152 LAT---------SVSSIILGAIGGLYQTSIRQVMAYSSISHLGWMISSMLISElmwefyfiIYSTLSSVMVLMFNQSkLY 222
Cdd:CHL00049 275 SSNewhllleilAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGD--------SNDGYASMITYMLFYI-FM 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 223 NIGQLFTLSSYSIES------------------KFIIIISMLSLGGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILTS 284
Cdd:CHL00049 346 NLGTFACIVLFGLRTgtdnirdyaglytkdpflALSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSV 425
|
....*....
gi 1812094806 285 INIYYYMRI 293
Cdd:CHL00049 426 ISIYYYLKI 434
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
55-266 |
2.77e-08 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 55.10 E-value: 2.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 55 ESSIKYFIVQVVASAMLLFSILM------------IVMKIPVGWEKEGMIPSMMISSSLLIKVGAAPFHLWFPEVM-KTS 121
Cdd:PRK08376 172 EAGIKYMFVGSLASSMVLLGIALlygqygtlnmayLAVKMSENPTVVAKIALALFIAGLAMKSGAVPVHMWLPDAYpAAP 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 122 SWINCMILMTWQ-KIAPMVVLSYCIGKTMFTLAT--------SVSSIILGAIGGLYQTSIRQVMAYSSISHLGWMISSML 192
Cdd:PRK08376 252 SSISAMLLVIKQaGLYALARVLFSIYGPAINLATvgwviiilGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLG 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 193 I------SELMWEFYFI-----IYSTLSSVMV---------LMFNQSKLYNIGQLFTLSSYSIESKFIIIISMLSLGGMP 252
Cdd:PRK08376 332 VglaalgDPAMASYGEIalaggIYHIVNHALYkallfltagAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLP 411
|
250
....*....|....
gi 1812094806 253 PLLGFLPKWLIVQT 266
Cdd:PRK08376 412 PFNGFASKWLIYES 425
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
34-293 |
6.00e-08 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 54.11 E-value: 6.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 34 LEMNLLSFIPLMVNEKNLMMNESSIKYFIVQVVASAMLLFSILMIVMKipVGW----EKEGMIPSM--------MISSSL 101
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGV--TGTlnmaDLAGALAENptvvtafgFVLLAL 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 102 LIKVGAAPFHLWFPEVM-KTSSWINCMILMTWQKIA---------------PMVVLSYCIgktmFTLATSVSSIILGAIG 165
Cdd:PRK08375 213 ALKAAVFPLHTWLPRAYpAAPPVVTALLSGLVTKVAvyaliriyftvfggdFRFALGLGW----LLAVLALLSMLVGSLA 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 166 GLYQTSIRQVMAYSSISHLGWMISSMLISELMWEFYFIIYSTLSSVMV--LMFNQSKLY------NIGQLFTLSSYSIES 237
Cdd:PRK08375 289 ALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKgaLFLAAGAIEvtygtrRLSELSGLGRRMPLT 368
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1812094806 238 KFIIIISMLSLGGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILTSINIYYYMRI 293
Cdd:PRK08375 369 AAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRI 424
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
158-326 |
9.29e-07 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 50.35 E-value: 9.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 158 SIILGAIGGLYQTSIRQVMAYSSISHLGWM---ISSMLISELMWEFYFIIYSTLSSVMVLM-----FNQSKLYNIGQLFT 229
Cdd:PRK12667 305 SAIIGALMMVVQKDVKRLLAYSTISHMGYIfmgIGIGTQLGLAAALFHIINHAIAKSLLFLasgvfIHAAGTRDIDELAG 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 230 LSSYSIESKFIIIISMLSLGGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILTSINIYYYMRISFASIILNSNESMWSA 309
Cdd:PRK12667 385 LGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFFGKPKSGEEVE 464
|
170
....*....|....*..
gi 1812094806 310 NIKPKTFKVVIPMMAII 326
Cdd:PRK12667 465 HKESPSMSVVILVLALA 481
|
|
| PRK07691 |
PRK07691 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
158-327 |
7.24e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 181085 [Multi-domain] Cd Length: 496 Bit Score: 44.55 E-value: 7.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 158 SIILGAIGGLYQTSIRQVMAYSSISHLGWM---ISSMLISELMWEFYFIIYSTLSSVMVLMFnqsklynIGQLFTLSSYS 234
Cdd:PRK07691 285 TIIFGVIGAVAYFDIKKIIIYNIMIAVGVIlvgVAMMTESGMIGAIYYLIHDMIVKAALFLL-------IGIMIKITGTT 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 235 IESKF------------IIIISMLSLGGMPPLLGFLPKWLIVQTMLENGMTsTVSIMVILTS-INIYYYMRISFASIILN 301
Cdd:PRK07691 358 DLKKMgglikrypvlgwMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFY-VSGIIVLLSSlLVLYSVIKIFLKGFWGE 436
|
170 180
....*....|....*....|....*.
gi 1812094806 302 SNESMWSANIKPKTFKVVIPMMAIIS 327
Cdd:PRK07691 437 PKGYDLNNKVPVKKLLLPAVVLVAIT 462
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
158-296 |
9.95e-05 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 44.22 E-value: 9.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 158 SIILGAIGGLYQTSIRQVMAYSSISHLGW-MISSMLISELMWE---FYFIIYSTLSSVMVLMF-------NQSKLYNIGQ 226
Cdd:PRK08668 282 SIIVGTLMAILQEDIKKLIAYSSVANGGYiLVGLGLGTSLGFAgglFHVFNHALFKGLFFLIFaaviyrtGTTKISEMGG 361
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1812094806 227 L-----FTLSSYsieskfiiIISMLSLGGMPPLLGFLPKWLIVQTMLENGMTSTVSIMVILTSINIYYYMRISFA 296
Cdd:PRK08668 362 LiekmpFTFAMY--------LVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLAG 428
|
|
| PRK06277 |
PRK06277 |
energy conserving hydrogenase EhbF; |
55-300 |
6.48e-04 |
|
energy conserving hydrogenase EhbF;
Pssm-ID: 235767 [Multi-domain] Cd Length: 478 Bit Score: 41.17 E-value: 6.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 55 ESSIKYFIVQVVASAMLLFSILM------------IVMKIPVGWEKEGM-IPSMMISSSLLIKVGAAPFHLWFPEVMKTS 121
Cdd:PRK06277 150 KAALKYMILGNVAGSILLLGIGFllastgtlnitdIHNALLVNPTSPVIyGGLLLLIFGLLYGSGLPPFHTIKSDIYAKA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 122 SWINCMILMTWQK---IAPMVV-------LSYCIGKTMFTLATSVSSIILGAIGGLYQTSIRQVMAYSSISHLGWMISSM 191
Cdd:PRK06277 230 KPFGSALLQTFSKfvlVALMLVifklfggLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGL 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 192 -------LISELMWEFYFIIY-STLSSVMVLMFNQSKLYNIGQLFTLSSYSIESKFIIIISMLSLGGMPPLLGFLPKWLI 263
Cdd:PRK06277 310 algtplgIVAGIFHAINHVIYkSALFLGAGIVSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLML 389
|
250 260 270
....*....|....*....|....*....|....*..
gi 1812094806 264 VQTMLENGMTSTVSIMVILtSINIYYYMRISFASIIL 300
Cdd:PRK06277 390 AQAAMQANMPELAIIMIIV-SIGTFVSMMKAFYLIYL 425
|
|
| PRK06589 |
PRK06589 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
10-285 |
5.05e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 38.64 E-value: 5.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 10 FLSSLMMGSMISISSNTwLGIWMGLEMNLLSFIPLMVNEKNLMMNESSIKYFIVQVVASAMLLFSILMIV--------MK 81
Cdd:PRK06589 122 FNLTILIGVLIALSSDL-FTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVILIytktgnldFV 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 82 IPVGWEKEGMIPSMMISSSLLIKVGAAPFHLWFPEVMKTSSWINCMI---------LMTWQKIAPMV----VLSYCIGKT 148
Cdd:PRK06589 201 SGGLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLhavivvktgLFCIYKILLYIfglsYLQRIFAEF 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812094806 149 MFTLATSVSSIILGAIGGLYQTSIRQVMAYSSISHLGWMI--SSMLISELMWEFYFIIYSTLSSVMVLMFNQSKLYNIG- 225
Cdd:PRK06589 281 NWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKk 360
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1812094806 226 --QLFTLSSYSIESK---FIIIISMLSLGGMPPLLGFLPKWLIVQTMLENGMTST---VSIMVILTSI 285
Cdd:PRK06589 361 edQVDKLHGTSKSFPlisFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLsiiVMLVVIASSI 428
|
|
| |
