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Conserved domains on  [gi|1811917763|gb|QID04002|]
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NADH dehydrogenase subunit 4L (mitochondrion) [Sinopodisma lofaoshana]

Protein Classification

NADH dehydrogenase subunit 4L( domain architecture ID 10009597)

NADH dehydrogenase subunit 4L is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 3-91 1.10e-23

NADH dehydrogenase subunit 4L; Provisional


:

Pssm-ID: 177218  Cd Length: 89  Bit Score: 85.98  E-value: 1.10e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917763  3 MFSIFTSLLIYFGGIYVFSSKRKHLLMVLLSLEYIVLSLFMLIVIFLIEFNYDYFFPVIFLIFSVCEGALGLSILVSMIR 82
Cdd:MTH00162   1 MMMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFFLTFSVCEGALGLSILVSMIR 80


                 ....*....
gi 1811917763 83 SHGNDFFNS 91
Cdd:MTH00162  81 SHGNDYFSS 89
 
Name Accession Description Interval E-value
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 3-91 1.10e-23

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177218  Cd Length: 89  Bit Score: 85.98  E-value: 1.10e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917763  3 MFSIFTSLLIYFGGIYVFSSKRKHLLMVLLSLEYIVLSLFMLIVIFLIEFNYDYFFPVIFLIFSVCEGALGLSILVSMIR 82
Cdd:MTH00162   1 MMMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFFLTFSVCEGALGLSILVSMIR 80


                 ....*....
gi 1811917763 83 SHGNDFFNS 91
Cdd:MTH00162  81 SHGNDYFSS 89
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
4-94 2.97e-07

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 44.09  E-value: 2.97e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917763  4 FSIFTSLLIYFGGIYVFSSkRKHLLMVLLSLEYIVLSLFMLIVIFLIEFNYDY--FFPVIFLIFSVCEGALGLSILVSMI 81
Cdd:pfam00420  1 AYLLLSGLLFLIGLYGLLL-RRNLLRVLLSLELMLNAVNLALVLFGRLTADPLpqALILTAIVIAAAEAAVGLALLVRIY 79

                         90
                 ....*....|...
gi 1811917763 82 RSHGNDFFNSFSL 94
Cdd:pfam00420 80 RTHGTDDVDSLNL 92
 
Name Accession Description Interval E-value
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 3-91 1.10e-23

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177218  Cd Length: 89  Bit Score: 85.98  E-value: 1.10e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917763  3 MFSIFTSLLIYFGGIYVFSSKRKHLLMVLLSLEYIVLSLFMLIVIFLIEFNYDYFFPVIFLIFSVCEGALGLSILVSMIR 82
Cdd:MTH00162   1 MMMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFFLTFSVCEGALGLSILVSMIR 80


                 ....*....
gi 1811917763 83 SHGNDFFNS 91
Cdd:MTH00162  81 SHGNDYFSS 89
ND4L MTH00188
NADH dehydrogenase subunit 4L; Provisional
 1-97 4.28e-14

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177237  Cd Length: 97  Bit Score: 61.91  E-value: 4.28e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917763  1 MFMFSIFTSLLIYFGGIYVFSSKRKHLLMVLLSLEYIVLSLFMLIVIFLIEFNYDYFFPVIFLIFSVCEGALGLSILVSM 80
Cdd:MTH00188   1 MFFSMILVILLFVVLGLFTFLLNRKHLLMLLLSLEAIMLSLFWFLLVGLSYMEKELYLSLVLLTFAACEASVGLALLVSL 80

                         90
                 ....*....|....*..
gi 1811917763 81 IRSHGNDFFNSFSLSLC 97
Cdd:MTH00188  81 IRSHGSDYVSSLNLIKC 97
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 20-97 5.05e-13

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 59.09  E-value: 5.05e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917763 20 FSSKRKHLLMVLLSLEYIVLSLFMLIVIFLIEFNYDYFF--PVIFLIFSVCEGALGLSILVSMIRSHGNDFFNSFSLSLC 97
Cdd:MTH00125  19 LSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTpmPIILLTFSACEAGTGLALLVATTRTHGSDHLKNLNLLQC 98
ND4L MTH00149
NADH dehydrogenase subunit 4L; Provisional
 1-97 1.18e-11

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214434  Cd Length: 97  Bit Score: 55.62  E-value: 1.18e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917763  1 MFMFSIFTSLLIYFGGIYVFSSKRKHLLMVLLSLEYIVLSLFMLIVIFLIEFNYDYFFPVIFLIFSVCEGALGLSILVSM 80
Cdd:MTH00149   1 SMFMLLLLSLFGFLMGVFALLFQYKHLLSILLSLEALMLSLLVMMFSSSGLISFSSYLFLIILTFGACEASLGLSLLVSL 80

                         90
                 ....*....|....*..
gi 1811917763 81 IRSHGNDFFNSFSLSLC 97
Cdd:MTH00149  81 IRLHGNDYVSSLSSLKF 97
ND4L MTH00013
NADH dehydrogenase subunit 4L; Validated
 2-97 1.91e-10

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 133655  Cd Length: 97  Bit Score: 52.45  E-value: 1.91e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917763  2 FMFSIFTSLLIYFGGIYVFSSKRKHLLMVLLSLEYIVLSLFMLIVIFL-IEFNYDYFFPVIFLIFSVCEGALGLSILVSM 80
Cdd:MTH00013   1 MMSPLFILSISPFISMFNLSLQRKHLLMSLLSLEAMILSLALFIPLSLmFANQVNGMLAIVLLTFGACEASLGLSLLVLM 80

                         90
                 ....*....|....*..
gi 1811917763 81 IRSHGNDFFNSFSLSLC 97
Cdd:MTH00013  81 TRSYGNDMLKSLTSNKC 97
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 24-97 4.67e-10

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 51.50  E-value: 4.67e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1811917763 24 RKHLLMVLLSLEYIVLSLFMLIVIFLIEFNYDYF--FPVIFLIFSVCEGALGLSILVSMIRSHGNDFFNSFSLSLC 97
Cdd:MTH00126  23 RTHLLSALLCLEGMMLSLFIALSLWALQLESTSFsaAPMLLLAFSACEASAGLALLVATARTHGTDRLQNLNLLQC 98
ND4L MTH00067
NADH dehydrogenase subunit 4L; Provisional
 4-97 8.34e-09

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177139  Cd Length: 98  Bit Score: 48.45  E-value: 8.34e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917763  4 FSIFTSLLIyfgGIYVFSSKRKHLLMVLLSLEYIVLSLFMLIVIFLIEFNYDYFF--PVIFLIFSVCEGALGLSILVSMI 81
Cdd:MTH00067   6 FTFYSAFLL---GLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWSTQFESLSYFslPMFMLTFSACEASTGLALMVATT 82

                         90
                 ....*....|....*.
gi 1811917763 82 RSHGNDFFNSFSLSLC 97
Cdd:MTH00067  83 RTHGTDHLKNLNLLQC 98
ND4L MTH00107
NADH dehydrogenase subunit 4L; Provisional
 24-97 8.74e-08

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177169  Cd Length: 98  Bit Score: 45.69  E-value: 8.74e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1811917763 24 RKHLLMVLLSLEYIVLSLFMLIVIFLIEFNYD--YFFPVIFLIFSVCEGALGLSILVSMIRSHGNDFFNSFSLSLC 97
Cdd:MTH00107  23 RSHLMSSLLCLEGMMLSLFIMATLTILNTHFTlaSMMPIILLVFAACEAAVGLALLVMVSNTYGTDYVQNLNLLQC 98
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
4-94 2.97e-07

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 44.09  E-value: 2.97e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917763  4 FSIFTSLLIYFGGIYVFSSkRKHLLMVLLSLEYIVLSLFMLIVIFLIEFNYDY--FFPVIFLIFSVCEGALGLSILVSMI 81
Cdd:pfam00420  1 AYLLLSGLLFLIGLYGLLL-RRNLLRVLLSLELMLNAVNLALVLFGRLTADPLpqALILTAIVIAAAEAAVGLALLVRIY 79

                         90
                 ....*....|...
gi 1811917763 82 RSHGNDFFNSFSL 94
Cdd:pfam00420 80 RTHGTDDVDSLNL 92
ND4L MTH00181
NADH dehydrogenase subunit 4L; Provisional
 7-95 1.91e-06

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214450  Cd Length: 93  Bit Score: 42.24  E-value: 1.91e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917763  7 FTSLLIYFGGIYVFSSKRKHLLMVLLSLEYIVLSLFMLIVIFLIEFNY--DYFFPVIFLIFSVCEGALGLSILVSMIRSH 84
Cdd:MTH00181   3 FVFISAFILLLLGLSLYKTHLLSLLLCLEGMMLFLFLLLALFSLLSSSssMLMFGLILLTFSACEAVLGLSLLVATNRTH 82

                         90
                 ....*....|.
gi 1811917763 85 GNDFFNSFSLS 95
Cdd:MTH00181  83 GSDHLLKFNLL 93
ND4L MTH00043
NADH dehydrogenase subunit 4L; Validated
 1-94 4.84e-05

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 214410  Cd Length: 98  Bit Score: 38.75  E-value: 4.84e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917763  1 MFMFSIFTSLLIYFGGIYVFSsKRKHLLMVLLSLEYIVLSLFMLIVIFLIEFNYDYF--FPVIFLIFSVCEGALGLSILV 78
Cdd:MTH00043   1 MNIILIIILSSFFLGLLGILI-NRLHLLSILLCLELLLISLFLNISIWSLNYGNFSNlsFSLLLLTLSACEASIGLSLMV 79

                         90
                 ....*....|....*.
gi 1811917763 79 SMIRSHGNDFFNSFSL 94
Cdd:MTH00043  80 LLSRNHNSDLVASLNL 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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