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Conserved domains on  [gi|1811917610|gb|QID03860|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Atractomorpha psittacina]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 4-173 5.60e-35

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 119.91  E-value: 5.60e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917610   4 LFISALSNSMNLYFIKINHPMSMMMIIIYQTLFIGLMTGNFMESFWISYILILTFLGGMLVIFVYISSIASNELFNLNLN 83
Cdd:MTH00166    2 MMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLK 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917610  84 KTMMFGFITMSIFMSLIIVEYIMISDIFKNKETSSMNLSidimestssltKIYNYPSFMITIMMMVYLLLTLIVVVYITN 163
Cdd:MTH00166   82 LLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFSLS-----------KLYNFPTMLITLFMIIYLLLTLIVVVKITN 150

                         170
                  ....*....|
gi 1811917610 164 INKGPIRKIN 173
Cdd:MTH00166  151 IFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 4-173 5.60e-35

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 119.91  E-value: 5.60e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917610   4 LFISALSNSMNLYFIKINHPMSMMMIIIYQTLFIGLMTGNFMESFWISYILILTFLGGMLVIFVYISSIASNELFNLNLN 83
Cdd:MTH00166    2 MMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLK 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917610  84 KTMMFGFITMSIFMSLIIVEYIMISDIFKNKETSSMNLSidimestssltKIYNYPSFMITIMMMVYLLLTLIVVVYITN 163
Cdd:MTH00166   82 LLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFSLS-----------KLYNFPTMLITLFMIIYLLLTLIVVVKITN 150

                         170
                  ....*....|
gi 1811917610 164 INKGPIRKIN 173
Cdd:MTH00166  151 IFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 4-173 5.60e-35

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 119.91  E-value: 5.60e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917610   4 LFISALSNSMNLYFIKINHPMSMMMIIIYQTLFIGLMTGNFMESFWISYILILTFLGGMLVIFVYISSIASNELFNLNLN 83
Cdd:MTH00166    2 MMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLK 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917610  84 KTMMFGFITMSIFMSLIIVEYIMISDIFKNKETSSMNLSidimestssltKIYNYPSFMITIMMMVYLLLTLIVVVYITN 163
Cdd:MTH00166   82 LLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFSLS-----------KLYNFPTMLITLFMIIYLLLTLIVVVKITN 150

                         170
                  ....*....|
gi 1811917610 164 INKGPIRKIN 173
Cdd:MTH00166  151 IFKGPLRSKN 160
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-171 2.78e-11

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 58.48  E-value: 2.78e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917610   1 MFSLFISALSNSMNLYFIKINHPMSMMMIIIYQTLFIGLMTGNFMESfWISYILILTFLGGMLVIFVYISSIASNELFNl 80
Cdd:MTH00212    1 MLLSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLIITMESNS-WYGYILFLIYIGGLLVLFGYMVALSPNEHLF- 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917610  81 nlNKTMMFGFITMSIFMSLIIVEYIMISDIFKNKETSSMNLSIdimestsslTKIYNYPSFMITIMMMVYLLLTLIVVVY 160
Cdd:MTH00212   79 --FKKYFKGFGMILISLNLYLLLMTLGSSNFSPMLNLKLELNV---------SKILSNNNIPILLFLGLILLIALLMVVK 147

                         170
                  ....*....|.
gi 1811917610 161 ITNINKGPIRK 171
Cdd:MTH00212  148 ICQYYKGPLRP 158
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-170 7.77e-08

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 49.11  E-value: 7.77e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917610   1 MFSLFISALSNSMNLYFIKINHPMSMMMIIIYQTLFIGLMTGnFMESFWISYILILTFLGGMLVIFVYISSIASNELFNL 80
Cdd:MTH00152    1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIG-LTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGS 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917610  81 NLNktMMFGFITMSIFMSLIIVEYIMISDIFknkeTSSMNLSIDIMESTSSLTKIYNYPSFMITIMMMVYLLLTLIVVVY 160
Cdd:MTH00152   80 NFK--FVFFSLTLFGFLGLFFFFLYLYSSGG----LSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVVK 153

                         170
                  ....*....|
gi 1811917610 161 ITNINKGPIR 170
Cdd:MTH00152  154 ICYYEEGSLR 163
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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