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Conserved domains on  [gi|1811917536|gb|QID03791|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Sinopodisma lushiensis]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009596)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 9-115 1.37e-43

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 137.99  E-value: 1.37e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536   9 FISFIVPMIVMILATILSKKLINDREKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPIVIIFKTSNIMI 88
Cdd:MTH00161    7 LIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMS 86

                          90       100
                  ....*....|....*....|....*..
gi 1811917536  89 WTMSTMFFILVLMGGLYHEWNQGALQW 115
Cdd:MTH00161   87 WLITSSFFILILLLGLYYEWNQGALEW 113
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 9-115 1.37e-43

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 137.99  E-value: 1.37e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536   9 FISFIVPMIVMILATILSKKLINDREKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPIVIIFKTSNIMI 88
Cdd:MTH00161    7 LIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMS 86

                          90       100
                  ....*....|....*....|....*..
gi 1811917536  89 WTMSTMFFILVLMGGLYHEWNQGALQW 115
Cdd:MTH00161   87 WLITSSFFILILLLGLYYEWNQGALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 2.57e-27

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 96.34  E-value: 2.57e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536  19 MILATILSKKlINDREKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPIVIIFKtSNIMIWTMSTMFFIL 98
Cdd:pfam00507   1 LLLSRLLGPK-RPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFR-ELGWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 1811917536  99 VLMGGLYHEWNQGALQ 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 9-115 1.04e-23

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 87.87  E-value: 1.04e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536   9 FISFIVPMIVMILATILSKKlINDREKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPIVIIFKTSNIM- 87
Cdd:COG0838    13 LVALGLALAMLLLSRLLGPK-RPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWFg 91

                          90       100
                  ....*....|....*....|....*...
gi 1811917536  88 IWTMstMFFILVLMGGLYHEWNQGALQW 115
Cdd:COG0838    92 LIEM--LVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 9-115 1.37e-43

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 137.99  E-value: 1.37e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536   9 FISFIVPMIVMILATILSKKLINDREKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPIVIIFKTSNIMI 88
Cdd:MTH00161    7 LIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMS 86

                          90       100
                  ....*....|....*....|....*..
gi 1811917536  89 WTMSTMFFILVLMGGLYHEWNQGALQW 115
Cdd:MTH00161   87 WLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 3.40e-40

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 129.59  E-value: 3.40e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536   1 MLILSTGGFISFIVPMIVMILATILSKKLINDREKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPIVII 80
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1811917536  81 FKTSNIMIWTMSTMFFILVLMGGLYHEWNQGALQWA 116
Cdd:MTH00148   81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-116 1.33e-37

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 123.18  E-value: 1.33e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536   1 MLILSTGGFISFIVPMIVMILATILSKKLINDREKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPIVII 80
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1811917536  81 FKTSNIMIWTMSTMFFILVLMGGLYHEWNQGALQWA 116
Cdd:MTH00202   81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWV 116
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-116 1.18e-32

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 110.72  E-value: 1.18e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536   1 MLILSTGGFISFIVPMIVMILATILSKKLINDREKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPIVII 80
Cdd:MTH00012    1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1811917536  81 FKTSNIMIWTMSTMFFILVLMGGLYHEWNQGALQWA 116
Cdd:MTH00012   81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 34-117 2.57e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 99.24  E-value: 2.57e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536  34 EKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPIVIIFKTSNIMIWTMSTMFFILVLMGGLYHEWNQGAL 113
Cdd:MTH00106   32 EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALLLISLLALSLAYEWTQKGL 111


                  ....
gi 1811917536 114 QWAD 117
Cdd:MTH00106  112 EWTE 115
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 9-116 1.19e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 97.64  E-value: 1.19e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536   9 FISFIVPMIVMILATILSKKLiNDREKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPIVIIFKTSNIMI 88
Cdd:MTH00113    8 TISLALSTILTTLNFWLTQTK-PDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINLTTPTT 86

                          90       100
                  ....*....|....*....|....*...
gi 1811917536  89 WTMSTMFFILVLMGGLYHEWNQGALQWA 116
Cdd:MTH00113   87 TLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 16-117 2.06e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 96.99  E-value: 2.06e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536  16 MIVMILATILSKKLIN----------DREKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPI---VIIFK 82
Cdd:MTH00069    3 MLMLLISTILSLILITisfwlplnnpDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTpwaSQLNT 82

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1811917536  83 TSNIMIWtmSTMFFILVLMGGLYhEWNQGALQWAD 117
Cdd:MTH00069   83 PTNTLFW--STLILILLTLGLIY-EWIQGGLEWAE 114
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 2.57e-27

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 96.34  E-value: 2.57e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536  19 MILATILSKKlINDREKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPIVIIFKtSNIMIWTMSTMFFIL 98
Cdd:pfam00507   1 LLLSRLLGPK-RPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFR-ELGWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 1811917536  99 VLMGGLYHEWNQGALQ 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 16-117 1.36e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 94.99  E-value: 1.36e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536  16 MIVMILATILSKKLI----------NDREKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPIVIIFKTSN 85
Cdd:MTH00136    5 TTILTITIALSLILAivsfwlpqmtPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPS 84

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1811917536  86 IMIWTMSTMFFILVLMGGLYHEWNQGALQWAD 117
Cdd:MTH00136   85 PLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 9-117 3.05e-26

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 94.28  E-value: 3.05e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536   9 FISFIVPMIVMILATILSKKLInDREKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPIVIIFKTSNIMI 88
Cdd:MTH00042    9 LIILILTSLLLLAGHFLPSRSP-DLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLITNPST 87

                          90       100
                  ....*....|....*....|....*....
gi 1811917536  89 WTMSTMFFILVLMGGLYHEWNQGALQWAD 117
Cdd:MTH00042   88 LLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-115 1.21e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 89.96  E-value: 1.21e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536   1 MLILSTGGFISFIVPMIVMILAtILSKKLINDREKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPIVII 80
Cdd:MTH00203    1 MNLIMLFFLIALLLSLILLFIA-FWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWS 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1811917536  81 FKTSNimIWTMSTMFFILVLMGGLYHEWNQGALQW 115
Cdd:MTH00203   80 NQLSS--LSLLLAFLFLILLTLGLIYEWLQGGLEW 112
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 9-115 1.04e-23

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 87.87  E-value: 1.04e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536   9 FISFIVPMIVMILATILSKKlINDREKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPIVIIFKTSNIM- 87
Cdd:COG0838    13 LVALGLALAMLLLSRLLGPK-RPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWFg 91

                          90       100
                  ....*....|....*....|....*...
gi 1811917536  88 IWTMstMFFILVLMGGLYHEWNQGALQW 115
Cdd:COG0838    92 LIEM--LVFIAILLVGLIYAWKKGALEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 10-116 1.40e-22

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 84.92  E-value: 1.40e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536  10 ISFIVPMIVMILATILSKKLiNDREKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPIVIIFKTSNiMIW 89
Cdd:PRK06602   17 VAIGLGILLLVAGKLLGPRA-PDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIG-WLG 94

                          90       100
                  ....*....|....*....|....*..
gi 1811917536  90 TMSTMFFILVLMGGLYHEWNQGALQWA 116
Cdd:PRK06602   95 FVEAMIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 9-115 1.04e-19

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 77.41  E-value: 1.04e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536   9 FISFIVPMIVMILATILSKKlINDREKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPIVIIFK-TSNIM 87
Cdd:MTH00018    8 IFSVVLSALFSGASYFLGVK-QPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNqIAPFG 86

                          90       100
                  ....*....|....*....|....*...
gi 1811917536  88 IWTMSTMFFILVLmgGLYHEWNQGALQW 115
Cdd:MTH00018   87 FWTMVGFLFILTL--GLIYEWIKGGLEW 112
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 32-115 1.50e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 72.05  E-value: 1.50e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536  32 DREKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPIVIIFKTSNIM-IWTMstMFFILVLMGGLYHEWNQ 110
Cdd:MTH00055   35 DSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFgFWVM--YLFLIILTIGLIYEWVK 112


                  ....*
gi 1811917536 111 GALQW 115
Cdd:MTH00055  113 GGLEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 32-115 1.38e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 67.27  E-value: 1.38e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536  32 DREKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPIVIIFKTSNIM-IWTMSTmfFILVLMGGLYHEWNQ 110
Cdd:MTH00030   40 DSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFsFWIVYT--FLIVLAIGLAYEWIK 117


                  ....*
gi 1811917536 111 GALQW 115
Cdd:MTH00030  118 GGLEW 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 9-115 1.11e-11

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 56.92  E-value: 1.11e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536   9 FISFIVPMIVMILATILSKKLINDR---EKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPIVIIFKTSN 85
Cdd:CHL00022   11 WAFLIISSLIPILAFLISGLLAPISkgpEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLG 90

                          90       100       110
                  ....*....|....*....|....*....|
gi 1811917536  86 IMIWtMSTMFFILVLMGGLYHEWNQGALQW 115
Cdd:CHL00022   91 VSAF-IEALIFVLILIVGLVYAWRKGALEW 119
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
1-115 1.43e-09

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 51.59  E-value: 1.43e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536   1 MLILSTGGFIsfivpmIVMILATILSKKLIN---DREKSSPFECGFDP-KSSARMpfSIRFFLIAVIFLIFDVEIALILP 76
Cdd:PRK08489   16 LLVLTFVAFF------LTTRLARFISRKLAQkntEKLKLAIYECGPEPvKQPNRI--SSHFYIMALLFILFDVEIVFMFP 87

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1811917536  77 IVIIFKTsnIMIWTMSTMF-FILVLMGGLYHEWNQGALQW 115
Cdd:PRK08489   88 WAVDFKL--LGLFGLIEMLlFIVLLTIGFIYAWKKGALEW 125
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
32-115 1.32e-08

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 48.97  E-value: 1.32e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536  32 DREKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPIVIIFKtsNIMIWTMSTMF-FILVLMGGLYHEWNQ 110
Cdd:PRK07756   39 SAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYD--KLGLFALIEMLiFVVMLLVGLAYAWKK 116


                  ....*
gi 1811917536 111 GALQW 115
Cdd:PRK07756  117 KVLQW 121
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 19-115 1.52e-07

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 46.20  E-value: 1.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536  19 MILATILSKKLINdREKSSPFECGFDPKSSARMP--FSIRFFLIAVIFLIFDVEIALILPIVIIFKTSNIMIWTMSTMFF 96
Cdd:PRK07928   22 VVVASLVGPKRYN-RAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDALGVFGLVEMALFM 100

                          90
                  ....*....|....*....
gi 1811917536  97 ILVLMGGLYhEWNQGALQW 115
Cdd:PRK07928  101 LTVFVAYAY-VWRRGGLEW 118
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-115 1.83e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 43.34  E-value: 1.83e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536   1 MLILSTGGFISFIVPMIVMILATILSKKLiNDREKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPIVII 80
Cdd:MTH00092    1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKK-FDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVS 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1811917536  81 FKTSNIMIWTMstMFFILvlmGGLYHEWNQGALQW 115
Cdd:MTH00092   80 DFSSLISFFML--MIFIF---FGFYMEWWYGKLIW 109
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 1-115 7.19e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 36.41  E-value: 7.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536   1 MLILSTGGFISFIVPMIVMILATIL--SKKLINDREKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPIV 78
Cdd:MTH00060    1 MLVLLFVFFVFFLLFLVIYFFHSGLwnNKIYSGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1811917536  79 ---IIFKTsnimiwTMSTMFFILVLMGGLYHEWNQGALQW 115
Cdd:MTH00060   81 fqgLLFYN------FWYYYFFLLLLFLGFVVELFSGYVRW 114
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 32-115 1.00e-03

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 36.33  E-value: 1.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917536  32 DREKSSPFECGFDPKSSARMPFSIRFFLIAVIFLIFDVEIALILPIVIIFKTSNIMIWtMSTMFFILVLMGGLYHEWNQG 111
Cdd:PRK06432   60 DQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPF-IETLIFLAMPLFAVYYAFKMG 138


                  ....
gi 1811917536 112 ALQW 115
Cdd:PRK06432  139 YMRW 142
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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