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Conserved domains on  [gi|1811917331|gb|QID03601|]
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cytochrome b (mitochondrion) [Bryodemella holdereri holdereri]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 685.36  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  12 IKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGASMF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  92 FICMYLHVGRGIYYGSYMYMNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWGGFAV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 172 DNATLNRFYTFHFLLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMILMMLCLINPYML 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 252 GDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYPINQIMFWIMMI 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1811917331 332 VVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLIN 366
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 685.36  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  12 IKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGASMF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  92 FICMYLHVGRGIYYGSYMYMNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWGGFAV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 172 DNATLNRFYTFHFLLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMILMMLCLINPYML 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 252 GDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYPINQIMFWIMMI 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1811917331 332 VVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLIN 366
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-365 4.48e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 376.05  E-value: 4.48e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  12 IKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGASMF 91
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  92 FICMYLHVGRGIYYGSYMY---MNtWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWGG 168
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKpreLN-WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGG 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 169 FAVDNATLNRFYTFH-FLLPFIIMAMVMMHLFFLHQTGSNNPTG----LNSNIDKIPFHPYFTYKDSITFIITIMILMML 243
Cdd:COG1290   179 EFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALL 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 244 CLINPymLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALLLSISILMIMPFYNKTKFRGIQFYPI 321
Cdd:COG1290   259 AFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPV 336

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1811917331 322 NQIMFWIMMIVVCLLTWIGKRPveEPYIMTGQILTIIYFSYFLI 365
Cdd:COG1290   337 RTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 2.53e-89

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 267.70  E-value: 2.53e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  10 PMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  90 MFFICMYLHVGRGIYYGSYM--YMNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1811917331 168 GFAVDNATLNRFYTFHFLLPFIIMAMVMMHLFFLHQTGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 3.08e-80

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 243.83  E-value: 3.08e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  19 LIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGASMFFICMYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  99 VGRGIYYGSYMYMN--TWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWGGFAVDNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1811917331 177 NRFYTFHFLLPFIIMAMVMMHLFFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 236-340 1.34e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.43  E-value: 1.34e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 236 TIMILMMLCLINPYMLGDPdnfmpANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFY-NKTKFR 314
Cdd:TIGR01156  47 TIACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQ 121

                          90       100
                  ....*....|....*....|....*.
gi 1811917331 315 GIQFYPINQIMFWIMMIVVcllTWIG 340
Cdd:TIGR01156 122 NPFRRPVATTVFLFGTVVA---LWLG 144
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 685.36  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  12 IKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGASMF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  92 FICMYLHVGRGIYYGSYMYMNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWGGFAV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 172 DNATLNRFYTFHFLLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMILMMLCLINPYML 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 252 GDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYPINQIMFWIMMI 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1811917331 332 VVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLIN 366
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 616.15  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331   1 MNKPLRLKHPMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMI 80
Cdd:MTH00145    1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  81 RTMHANGASMFFICMYLHVGRGIYYGSYMYMNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTD 160
Cdd:MTH00145   81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 161 IVQWVWGGFAVDNATLNRFYTFHFLLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMIL 240
Cdd:MTH00145  161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 241 MMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYP 320
Cdd:MTH00145  241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1811917331 321 INQIMFWIMMIVVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLINIHIAKMWDTLI 377
Cdd:MTH00145  321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNIL 377
CYTB MTH00191
cytochrome b; Provisional
 5-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 606.91  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331   5 LRLKHPMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMH 84
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  85 ANGASMFFICMYLHVGRGIYYGSYMYMNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQW 164
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 165 VWGGFAVDNATLNRFYTFHFLLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMILMMLC 244
Cdd:MTH00191  161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 245 LINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYPINQI 324
Cdd:MTH00191  241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1811917331 325 MFWIMMIVVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLI 365
Cdd:MTH00191  321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00119
cytochrome b; Provisional
 1-365 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 606.51  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331   1 MNKPLRLKHPMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMI 80
Cdd:MTH00119    1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  81 RTMHANGASMFFICMYLHVGRGIYYGSYMYMNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTD 160
Cdd:MTH00119   81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 161 IVQWVWGGFAVDNATLNRFYTFHFLLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMIL 240
Cdd:MTH00119  161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 241 MMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYP 320
Cdd:MTH00119  241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1811917331 321 INQIMFWIMMIVVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLI 365
Cdd:MTH00119  321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLI 365
CYTB MTH00131
cytochrome b; Provisional
 5-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 606.26  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331   5 LRLKHPMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMH 84
Cdd:MTH00131    4 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  85 ANGASMFFICMYLHVGRGIYYGSYMYMNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQW 164
Cdd:MTH00131   84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 165 VWGGFAVDNATLNRFYTFHFLLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMILMMLC 244
Cdd:MTH00131  164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLA 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 245 LINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYPINQI 324
Cdd:MTH00131  244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQF 323

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1811917331 325 MFWIMMIVVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLI 365
Cdd:MTH00131  324 LFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLV 364
CYTB MTH00100
cytochrome b; Provisional
 4-372 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 598.16  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331   4 PLRLKHPMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTM 83
Cdd:MTH00100    3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  84 HANGASMFFICMYLHVGRGIYYGSYMYMNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQ 163
Cdd:MTH00100   83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 164 WVWGGFAVDNATLNRFYTFHFLLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMILMML 243
Cdd:MTH00100  163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 244 CLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYPINQ 323
Cdd:MTH00100  243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1811917331 324 IMFWIMMIVVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLINIHIAKM 372
Cdd:MTH00100  323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASL 371
CYTB MTH00074
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 596.28  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331   1 MNKPLRLKHPMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMI 80
Cdd:MTH00074    1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  81 RTMHANGASMFFICMYLHVGRGIYYGSYMYMNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTD 160
Cdd:MTH00074   81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 161 IVQWVWGGFAVDNATLNRFYTFHFLLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMIL 240
Cdd:MTH00074  161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 241 MMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYP 320
Cdd:MTH00074  241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1811917331 321 INQIMFWIMMIVVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLINIHIAKMWD 374
Cdd:MTH00074  321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLE 374
CYTB MTH00016
cytochrome b; Validated
 1-378 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 592.04  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331   1 MNKPLRLKHPMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMI 80
Cdd:MTH00016    1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  81 RTMHANGASMFFICMYLHVGRGIYYGSYMYMNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTD 160
Cdd:MTH00016   81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 161 IVQWVWGGFAVDNATLNRFYTFHFLLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMIL 240
Cdd:MTH00016  161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 241 MMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYP 320
Cdd:MTH00016  241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1811917331 321 INQIMFWIMMIVVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLINIHIAKMWDTLIK 378
Cdd:MTH00016  321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLLK 378
CYTB MTH00034
cytochrome b; Validated
 4-365 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 554.70  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331   4 PLRLKHPMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTM 83
Cdd:MTH00034    3 PLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNI 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  84 HANGASMFFICMYLHVGRGIYYGSYMYMNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQ 163
Cdd:MTH00034   83 HANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQ 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 164 WVWGGFAVDNATLNRFYTFHFLLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMILMML 243
Cdd:MTH00034  163 WIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 244 CLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYPINQ 323
Cdd:MTH00034  243 ALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQ 322

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1811917331 324 IMFWIMMIVVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLI 365
Cdd:MTH00034  323 IAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLF 364
CYTB MTH00224
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 519.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331   1 MNKPLRLKHPMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMI 80
Cdd:MTH00224    1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  81 RTMHANGASMFFICMYLHVGRGIYYGSYMYMNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTD 160
Cdd:MTH00224   81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 161 IVQWVWGGFAVDNATLNRFYTFHFLLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMIL 240
Cdd:MTH00224  161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 241 MMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYP 320
Cdd:MTH00224  241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1811917331 321 INQIMFWIMMIVVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLINIHIAKMWDTLIK 378
Cdd:MTH00224  321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLLN 378
CYTB MTH00022
cytochrome b; Validated
 4-367 1.33e-180

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 506.16  E-value: 1.33e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331   4 PLRLKHPMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTM 83
Cdd:MTH00022    2 PLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  84 HANGASMFFICMYLHVGRGIYYGSYMYMNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQ 163
Cdd:MTH00022   82 HANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQ 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 164 WVWGGFAVDNATLNRFYTFHFLLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMILMML 243
Cdd:MTH00022  162 WVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFI 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 244 CLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYPINQ 323
Cdd:MTH00022  242 VYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGR 321

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1811917331 324 IMFWIMMIVVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLINI 367
Cdd:MTH00022  322 MAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLI 365
CYTB MTH00053
cytochrome b; Provisional
 1-374 9.71e-177

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 496.54  E-value: 9.71e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331   1 MNKPLRLKHPMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMI 80
Cdd:MTH00053    1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  81 RTMHANGASMFFICMYLHVGRGIYYGSYMYMNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTD 160
Cdd:MTH00053   81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 161 IVQWVWGGFAVDNATLNRFYTFHFLLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMIL 240
Cdd:MTH00053  161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 241 MMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYP 320
Cdd:MTH00053  241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1811917331 321 INQIMFWIMMIVVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLINIHIAKMWD 374
Cdd:MTH00053  321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLE 374
CYTB MTH00033
cytochrome b; Provisional
 17-365 1.83e-134

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 389.30  E-value: 1.83e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  17 NSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGASMFFICMY 96
Cdd:MTH00033   13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  97 LHVGRGIYYGSYMYMNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWGGFAVDNATL 176
Cdd:MTH00033   93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 177 NRFYTFHFLLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMILMMLClINPY---MLGD 253
Cdd:MTH00033  173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIG-IEPRietLLQD 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 254 PDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYPINQIMFWIMMIVV 333
Cdd:MTH00033  252 PENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDF 331

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1811917331 334 CLLTWIGKRPV-EEPYIMTGQILTIIYFSYFLI 365
Cdd:MTH00033  332 IILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-365 4.48e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 376.05  E-value: 4.48e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  12 IKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGASMF 91
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  92 FICMYLHVGRGIYYGSYMY---MNtWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWGG 168
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKpreLN-WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGG 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 169 FAVDNATLNRFYTFH-FLLPFIIMAMVMMHLFFLHQTGSNNPTG----LNSNIDKIPFHPYFTYKDSITFIITIMILMML 243
Cdd:COG1290   179 EFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALL 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 244 CLINPymLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALLLSISILMIMPFYNKTKFRGIQFYPI 321
Cdd:COG1290   259 AFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPV 336

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1811917331 322 NQIMFWIMMIVVCLLTWIGKRPveEPYIMTGQILTIIYFSYFLI 365
Cdd:COG1290   337 RTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
CYTB MTH00086
cytochrome b; Provisional
 13-365 2.62e-127

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 370.04  E-value: 2.62e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  13 KIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGASMFF 92
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  93 ICMYLHVGRGIYYGSYMYMNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWGGFAVD 172
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 173 NATLNRFYTFHFLLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIItIMILMMLCLINPYMLG 252
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIF-WLVFIIFSLFYPFNLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 253 DPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNktkFRGIQFYPINQIMFWIMMIV 332
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN---NYTSCLNKLNKFLVFSFIVV 316

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1811917331 333 VCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLI 365
Cdd:MTH00086  317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 2.53e-89

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 267.70  E-value: 2.53e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  10 PMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  90 MFFICMYLHVGRGIYYGSYM--YMNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1811917331 168 GFAVDNATLNRFYTFHFLLPFIIMAMVMMHLFFLHQTGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 11-358 7.19e-83

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 256.45  E-value: 7.19e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  11 MIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGASM 90
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  91 FFICMYLHVGRGIYYGSYMYMNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWGGFA 170
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 171 VDNATLNRFYTFHFLLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNI-DKIPFHPYFTYKDSITFIITIMILMMLCLINPY 249
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 250 MLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIaLLLSISILMIMPFYNKTKFRGIqfypINQIMFWIM 329
Cdd:MTH00046  241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLI 315

                         330       340
                  ....*....|....*....|....*....
gi 1811917331 330 MIVVCLLTWIGKRPVEEPYIMTGQILTII 358
Cdd:MTH00046  316 VSLFFSLSYLGGCHPEYPYLLISQLFSVL 344
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 3.08e-80

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 243.83  E-value: 3.08e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  19 LIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGASMFFICMYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  99 VGRGIYYGSYMYMN--TWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWGGFAVDNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1811917331 177 NRFYTFHFLLPFIIMAMVMMHLFFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 1.10e-48

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 162.03  E-value: 1.10e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  89 SMFFICMYLHVGRGIYYGSYMYMN--TWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 167 GGFAVDNATLNRFYTFHF-LLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMILMMLCL 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1811917331 246 INPYMLGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-354 2.26e-48

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 160.50  E-value: 2.26e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 208 NPTGLNSNIDKIPFHPYFTYKDSITFIITIMILMMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPN 287
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1811917331 288 KLGGVIALLLSISILMIMPFYNKTKFRGiQFYPINQIMFWIMMIVVCLLTWIGKRPVEEPYIMTGQI 354
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 1.72e-42

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 143.77  E-value: 1.72e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 259 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYPINQIMFWIMMIVVCLLTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1811917331 339 IGKRPVEEPYIMTGQILTIIY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 23-209 4.21e-40

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 141.77  E-value: 4.21e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  23 PAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGASMFFICMYLHVGRG 102
Cdd:PRK03735   33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 103 IYYGSYMYMN--TWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWGGFAVDNATLNRFY 180
Cdd:PRK03735  113 FFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFF 192

                         170       180       190
                  ....*....|....*....|....*....|
gi 1811917331 181 TFH-FLLPFIIMAMVMMHLFFLHQTGSNNP 209
Cdd:PRK03735  193 AIHvFFLPWALAVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 25-209 3.54e-34

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 125.60  E-value: 3.54e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331  25 PTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGASMFFICMYLHVGRGIY 104
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 105 YGSYMYMN--TWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWGGFAVDNATLNRFYTF 182
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*...
gi 1811917331 183 H-FLLPFIIMAMVMMHLFFLHQTGSNNP 209
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
petD CHL00058
cytochrome b6/f complex subunit IV
 236-340 3.88e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 63.87  E-value: 3.88e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 236 TIMILMMLCLINPYMLGDPdnfmpANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFY-NKTKFR 314
Cdd:CHL00058   47 TIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQ 121

                          90       100
                  ....*....|....*....|....*.
gi 1811917331 315 GIQFYPINQIMFWIMMIVVcllTWIG 340
Cdd:CHL00058  122 NPFRRPVATTVFLIGTAVA---LWLG 144
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 236-346 5.32e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 63.27  E-value: 5.32e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 236 TIMILMMLCLINPYMLGDPdnfmpANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFY-NKTKFR 314
Cdd:COG5679    48 TIALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNVNKFQ 122

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1811917331 315 GIQFYPINQIMFWIMMIVVCLLTWIGKRPVEE 346
Cdd:COG5679   123 NPFRRPVATAVFLFGTLVTLWLGIGAALPIDK 154
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 236-340 1.34e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.43  E-value: 1.34e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917331 236 TIMILMMLCLINPYMLGDPdnfmpANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFY-NKTKFR 314
Cdd:TIGR01156  47 TIACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQ 121

                          90       100
                  ....*....|....*....|....*.
gi 1811917331 315 GIQFYPINQIMFWIMMIVVcllTWIG 340
Cdd:TIGR01156 122 NPFRRPVATTVFLFGTVVA---LWLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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