|
Name |
Accession |
Description |
Interval |
E-value |
| ND4 |
MTH00163 |
NADH dehydrogenase subunit 4; Provisional |
1-444 |
4.70e-160 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214443 [Multi-domain] Cd Length: 445 Bit Score: 459.23 E-value: 4.70e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 1 MLKYLLMLCFLIPIGLLENCWWLVHSLMFLLSFIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITASSSVY 80
Cdd:MTH00163 1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 81 LFSYHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFK 160
Cdd:MTH00163 81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 161 INNIFNTLYFPLLFDCGSFYFMFYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISF 240
Cdd:MTH00163 161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 241 LGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNI 320
Cdd:MTH00163 241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 321 IYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTLYMYS 400
Cdd:MTH00163 321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1811917328 401 YSQHGFYYSGIYTCSLGYFREYHLLFLHWFPLNILCLKSEYFYF 444
Cdd:MTH00163 401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
|
|
| ND4 |
MTH00150 |
NADH dehydrogenase subunit 4; Provisional |
31-442 |
6.33e-113 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214435 [Multi-domain] Cd Length: 417 Bit Score: 337.97 E-value: 6.33e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 31 LSFIFMFSvySYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITASSSVYLFSYHSNFFIFLVLLLLVTLYCSFSSLSLL 110
Cdd:MTH00150 1 LSLLLLYS--SFSSYESLSELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSSFSLLVLLLCLILVLAFSVSSLL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 111 SFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLLFDCGSFYFM---FYVFI 187
Cdd:MTH00150 79 MFYFFFEASLIPTLLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLISSLRKLLSSmglWGLLV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 188 LFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQ 267
Cdd:MTH00150 159 FLAFLVKLPMYPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQ 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 268 VDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWW 347
Cdd:MTH00150 239 SDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWW 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 348 FLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTLYMYSYSQHGFYYSGIYTCSLGYFREYHLLFL 427
Cdd:MTH00150 319 FLFCIINMAAPPSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLL 398
|
410
....*....|....*
gi 1811917328 428 HWFPLNILCLKSEYF 442
Cdd:MTH00150 399 HWVPLLLLILKSDLL 413
|
|
| ND4 |
MTH00014 |
NADH dehydrogenase subunit 4; Validated |
1-440 |
2.11e-112 |
|
NADH dehydrogenase subunit 4; Validated
Pssm-ID: 214399 [Multi-domain] Cd Length: 452 Bit Score: 337.87 E-value: 2.11e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 1 MLKYLLMLCFLIPIGLLENCWWLVHS---LMFLLSFIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITASS 77
Cdd:MTH00014 1 MLKLIMPLISLLLLPLIKYPWSWALTfstLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILASF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 78 SVYLFSYHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLV 157
Cdd:MTH00014 81 KIFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 158 LFKI---NNIFNTLYFPLLFDCGSFYFMFYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRV 234
Cdd:MTH00014 161 ILLIfytNNSLSMLMSSMEPPSIYLMNLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 235 MKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGL 314
Cdd:MTH00014 241 SSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSSAL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 315 FCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVY 394
Cdd:MTH00014 321 FALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITSFLAAAY 400
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1811917328 395 TLYMYSYSQHGFYYSGIYTCSLGYFREYHLLFLHWFPLNILCLKSE 440
Cdd:MTH00014 401 SLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPD 446
|
|
| ND4 |
MTH00124 |
NADH dehydrogenase subunit 4; Provisional |
1-440 |
2.71e-109 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214427 [Multi-domain] Cd Length: 457 Bit Score: 330.23 E-value: 2.71e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 1 MLKYLLMLCFLIPIGLLENC---WWLVHSLMFLLSFI-FMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITAS 76
Cdd:MTH00124 1 MLKIILPTIMLIPTTLLSKPkflWTNTTTYSLLIALLsLQWLKPPYYPTKNLTQWLGIDQISAPLLVLSCWLLPLMILAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 77 SSVYLFSYHSN--FFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPL 154
Cdd:MTH00124 81 QNHLQHEPLQRkrTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 155 LLVLFKINNIFNTLYFPLLFDCGSF------YFMFYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGG 228
Cdd:MTH00124 161 LIAILYLHNQTGTLSLPMLQLTHPTltnswtNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 229 YGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHG 308
Cdd:MTH00124 241 YGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 309 LCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLS 388
Cdd:MTH00124 321 LTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLAT 400
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 1811917328 389 FFSAVYTLYMYSYSQHGFYYSGIYTCSLGYFREYHLLFLHWFPLNILCLKSE 440
Cdd:MTH00124 401 LITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPE 452
|
|
| ND4 |
MTH00205 |
NADH dehydrogenase subunit 4; Provisional |
2-444 |
2.82e-107 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214457 [Multi-domain] Cd Length: 448 Bit Score: 324.63 E-value: 2.82e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 2 LKYLLMLCFLIPIGLLENCWW--LVHSLMFLLSFIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITASSSV 79
Cdd:MTH00205 1 MSIFGVFSLLIILFVLKFKDWsfFSNLLLIGLFFSSFFFSNSFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 80 YLFSYHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLF 159
Cdd:MTH00205 81 FKSNKNSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 160 KINNIFNTLYFPLLFDCGSFYFMFYVFILF---AFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMK 236
Cdd:MTH00205 161 FLNSLNFSLSMFFNFPLNFSDFYLFLYWIFlmlAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 237 IISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFC 316
Cdd:MTH00205 241 MLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 317 LSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTL 396
Cdd:MTH00205 321 LANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSL 400
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 1811917328 397 YMYSYSQHGFYYSGIYTCSLGYFREYHLLFLHWFPLNILCLKSEYFYF 444
Cdd:MTH00205 401 YLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFIC 448
|
|
| ND4 |
MTH00068 |
NADH dehydrogenase subunit 4; Provisional |
1-440 |
3.10e-103 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214417 [Multi-domain] Cd Length: 458 Bit Score: 314.55 E-value: 3.10e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 1 MLKYLLMLCFLIPIGLLENCWWLVHSLMFLLSFIFMFSV----YSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITAS 76
Cdd:MTH00068 1 MLKIIIPTLMLLPTTWLSPKKWLWTLTTTNSLIIAFLSLmwfnLPSETMNFTNKYFGIDQISSPLLILTCWLLPLMILAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 77 SSVYLFS--YHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPL 154
Cdd:MTH00068 81 QNHLKNEpiNRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 155 LLVLFKINNIFNTLYFPLLFDCGSFYFM------FYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGG 228
Cdd:MTH00068 161 LIALLILQNSLGSLSLILLELMSPMQLMtytnkiWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 229 YGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHG 308
Cdd:MTH00068 241 YGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 309 LCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLS 388
Cdd:MTH00068 321 LTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGT 400
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 1811917328 389 FFSAVYTLYMYSYSQHGFYYSGIYTCSLGYFREYHLLFLHWFPLNILCLKSE 440
Cdd:MTH00068 401 LITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPE 452
|
|
| ND4 |
MTH00044 |
NADH dehydrogenase subunit 4; Validated |
5-432 |
1.90e-96 |
|
NADH dehydrogenase subunit 4; Validated
Pssm-ID: 214411 [Multi-domain] Cd Length: 458 Bit Score: 297.27 E-value: 1.90e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 5 LLMLCFLIPIGLLENCWWLVHSLMFLLSfIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITASSSVYLFSY 84
Cdd:MTH00044 11 IAITSWIVPKNKLWPISISQSSLISLLS-LFLLNNHWSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLASINHLSNNS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 85 HSN--FFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKIN 162
Cdd:MTH00044 90 PNNqrTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLPLLISLIAIY 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 163 NIFNTLYFPLLFDC------GSFYFMFYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMK 236
Cdd:MTH00044 170 SSSSSLSIPLSELNwltslsSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGLIRLIN 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 237 IISFLGLSF-NYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLF 315
Cdd:MTH00044 250 LFSLPSANNiSFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSALF 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 316 CLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVYT 395
Cdd:MTH00044 330 CLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGLATVFGAIYS 409
|
410 420 430
....*....|....*....|....*....|....*..
gi 1811917328 396 LYMYSYSQHGFYYSGIYTCSLGYFREYHLLFLHWFPL 432
Cdd:MTH00044 410 LLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPL 446
|
|
| ND4 |
MTH00110 |
NADH dehydrogenase subunit 4; Provisional |
1-437 |
3.33e-95 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 177172 [Multi-domain] Cd Length: 459 Bit Score: 294.11 E-value: 3.33e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 1 MLKYLLMLCFLIPIGLLENCWWL-----VHSLMFLLSFIFMFSVYSYSDLNMIGYFFgIDYFSFMLILLSFWIVSLMITA 75
Cdd:MTH00110 1 MLKIIIPTIMLIPLTWLSKNNMIwinttTYSLLISLISLLLLNQPNDNSLNFSLLFF-SDSLSTPLLILTTWLLPLMLMA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 76 SSSvYLFS---YHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASL 152
Cdd:MTH00110 80 SQH-HLSKeplTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 153 PLLLVLFKINNIFNTLYFPL-------LFDCGSFYFMFYVFILfAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLK 225
Cdd:MTH00110 159 PLLVALLYIQNNLGSLNFLLlqlwaqpLPNSWSNNLLWLACMM-AFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLK 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 226 LGGYGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMV 305
Cdd:MTH00110 238 LGGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMI 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 306 GHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLI 385
Cdd:MTH00110 318 AHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMG 397
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 1811917328 386 FLSFFSAVYTLYMYSYSQHGFYYSGIYTCSLGYFREYHLLFLHWFPLNILCL 437
Cdd:MTH00110 398 LNMLITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSL 449
|
|
| ND4 |
MTH00206 |
NADH dehydrogenase subunit 4; Provisional |
5-432 |
1.53e-92 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214458 [Multi-domain] Cd Length: 450 Bit Score: 286.84 E-value: 1.53e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 5 LLMLCFLIPIGLLENCWWLVHSLMFLLSFIFMFSVYSYSDLNMIG--YFFGIDYFSFMLILLSFWIVSLMITASSSVYLF 82
Cdd:MTH00206 6 LIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFsnLYLSYDPLSSPLVILSCWLLPLMFLASQNHMKN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 83 SYHSN--FFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFK 160
Cdd:MTH00206 86 EPINRqrIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALLF 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 161 INNIFNTLYFPLL---FDCGSFYFMFYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKI 237
Cdd:MTH00206 166 LQNSLGSLSLYILyfsKLTTWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILI 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 238 ISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCL 317
Cdd:MTH00206 246 LGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCL 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 318 SNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTLY 397
Cdd:MTH00206 326 ANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSLY 405
|
410 420 430
....*....|....*....|....*....|....*
gi 1811917328 398 MYSYSQHGFYYSGIYTCSLGYFREYHLLFLHWFPL 432
Cdd:MTH00206 406 MFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPV 440
|
|
| ND4 |
MTH00127 |
NADH dehydrogenase subunit 4; Provisional |
1-440 |
1.32e-86 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 177186 [Multi-domain] Cd Length: 459 Bit Score: 271.83 E-value: 1.32e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 1 MLKYLLMLCFLIPIGLLENCWWL-----VHSLMFLLSFIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITA 75
Cdd:MTH00127 1 MLKILIPTLMLIPTTWLTPAKWLwtttlAHSLLIALASLTWLKNLSETGWSSLNLYMATDPLSTPLLVLTCWLLPLMILA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 76 SSSvYLFSYHSN---FFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASL 152
Cdd:MTH00127 81 SQN-HTAPEPINrqrMYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 153 PLLLVLFKINNIFNTL------YFPLLFDCGSFYFMFYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKL 226
Cdd:MTH00127 160 PLLVALLLLQNSTGTLsmltlqYSQPLQLSSWADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 227 GGYGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVG 306
Cdd:MTH00127 240 GGYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 307 HGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIF 386
Cdd:MTH00127 320 HGLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGL 399
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1811917328 387 LSFFSAVYTLYMYSYSQHGFYYSGIYTCSLGYFREYHLLFLHWFPLNILCLKSE 440
Cdd:MTH00127 400 GTLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPE 453
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
113-379 |
5.54e-54 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 181.74 E-value: 5.54e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 113 YIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLLF------DCGSFYFMFYVF 186
Cdd:pfam00361 8 YLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSkaltggLNSSGLLLLFLL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 187 ILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFICIR 266
Cdd:pfam00361 88 ILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALV 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLS-NIIYERLGSRSLLINKGMINLMPTMSF 345
Cdd:pfam00361 168 QTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILAL 247
|
250 260 270
....*....|....*....|....*....|....
gi 1811917328 346 WWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPY 379
Cdd:pfam00361 248 VFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWI 281
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
8-399 |
2.10e-52 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 182.97 E-value: 2.10e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 8 LCFLIPIGLLENCWWL---VHSLMFLLSfIFMFSVYSYSDLNM-------------IGYFFGIDYFSFMLILLSFWIVSL 71
Cdd:COG1008 19 LLLLLPRRNARLARWValaVSLLTLLLS-LYLLAGFDPGTGGFqfvesypwipslgISYHLGVDGISLPLVLLTALLTPL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 72 MITASSSVYlfSYHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYqPERLQAGIYLIFYTLVAS 151
Cdd:COG1008 98 AILASWNEI--KKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIWGG-ERRIYAAIKFFLYTLAGS 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 152 LPLL---LVLFKINNIFNTLYFPLLFDCGSFYFMFYVFILF--AFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKL 226
Cdd:COG1008 175 LLMLvaiLALYFLAGALTFDIAELAAAPLPLTAQLLLFLAFfiAFAVKVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLKM 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 227 GGYGIFRVMkiisfLGL------SFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGS 300
Cdd:COG1008 255 GGYGLLRFA-----LPLfpeasaYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGA 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 301 LSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYM 380
Cdd:COG1008 330 VLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWL 409
|
410
....*....|....*....
gi 1811917328 381 FLLLIFLSFFSAVYTLYMY 399
Cdd:COG1008 410 AILAALGLILTAAYLLWMY 428
|
|
| ND4 |
MTH00217 |
NADH dehydrogenase subunit 4; Provisional |
113-399 |
2.30e-47 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214462 [Multi-domain] Cd Length: 482 Bit Score: 169.46 E-value: 2.30e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 113 YIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLL----FDCGSFYFMFYVFiL 188
Cdd:MTH00217 135 YILFEGILIPMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDYQALcclkIEKELQYFIFLGF-F 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 189 FAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQ 267
Cdd:MTH00217 214 LSLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFsWPLLPEASEYFSPLIQTLSLLAIIYGSLTTCRQ 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 268 VDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWW 347
Cdd:MTH00217 294 VDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILM 373
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1811917328 348 FLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTLYMY 399
Cdd:MTH00217 374 LLLVLANASIPLSCNFVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYLY 425
|
|
| ND4 |
MTH00226 |
NADH dehydrogenase subunit 4; Provisional |
52-397 |
5.55e-47 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214466 [Multi-domain] Cd Length: 505 Bit Score: 168.95 E-value: 5.55e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 52 FGIDYFSFMLILLSFWIV--SLMITASSSVYLfsyhSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILG 129
Cdd:MTH00226 98 FAVDGISIYFIILTGFIVpcSILISWHSVKYL----TKSFLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGI 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 130 WGYQPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLLFDC-----GSFYFMFYVFILFAFLVSMPMFLFHLWL 204
Cdd:MTH00226 174 WGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTLASCshvvsEQTQKWIFLGIFLAMAVKIPIFPFHIWL 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 205 PSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGL-SFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMS 283
Cdd:MTH00226 254 PKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGAqNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMG 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 284 MVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNL 363
Cdd:MTH00226 334 LVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNF 413
|
330 340 350
....*....|....*....|....*....|....
gi 1811917328 364 FGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTLY 397
Cdd:MTH00226 414 IGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFY 447
|
|
| ND4 |
MTH00204 |
NADH dehydrogenase subunit 4; Provisional |
113-399 |
1.08e-46 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 164750 [Multi-domain] Cd Length: 485 Bit Score: 167.93 E-value: 1.08e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 113 YIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTL-YFPLLFDCGSFYFMFYVFILF-- 189
Cdd:MTH00204 138 YILFEGILIPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTdYQILLNIKLPLSIQKWLLVGFfl 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 190 AFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQV 268
Cdd:MTH00204 218 SLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFsWPLFPAASEYFAPLIVMLSVIAVIYGSLTTCRQV 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 269 DLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWF 348
Cdd:MTH00204 298 DFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIML 377
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1811917328 349 LLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTLYMY 399
Cdd:MTH00204 378 VLSLANMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLY 428
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
7-399 |
4.24e-46 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 166.53 E-value: 4.24e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 7 MLCFLIPIGLLENCWW--LVHSLMFLLSFIFMFSVYSYSDLNM-------------IGYFFGIDYFSFMLILLSFWIVSL 71
Cdd:PRK05846 18 LLVLLTERFGARLARWiaLIGTLLTLLLSLVLWIGFDSSNAGFqfvekhpwiprfgISYHLGVDGISLLLVVLTALLTPL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 72 MITASSSVylFSYHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYqPERLQAGIYLIFYTLVAS 151
Cdd:PRK05846 98 AVLASWEE--IKKRVKFYMAALLWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGVWGG-KNRIYAATKFFLYTLLGS 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 152 LPLLLVLFkinnifnTLYFPLLFDCGSF---------------YFMFYVFiLFAFLVSMPMFLFHLWLPSAHVEAPISGS 216
Cdd:PRK05846 175 LLMLVAII-------YLVVVYYNATGTFdiadllnlplppgvqYWLFLAF-FIAFAVKMPMFPLHTWLPDAHVQAPTAGS 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 217 MILAGVLLKLGGYGIFRVMkiisfLGL------SFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLM 290
Cdd:PRK05846 247 VLLAGILLKMGAYGLLRFS-----LPLfpdashEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIF 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 291 TMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLL 370
Cdd:PRK05846 322 AGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLIL 401
|
410 420
....*....|....*....|....*....
gi 1811917328 371 NSIISWSPYMFLLLIFLSFFSAVYTLYMY 399
Cdd:PRK05846 402 LGSFQVNPVIAFIATTGLILAAVYSLWLY 430
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
48-399 |
1.05e-42 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 156.64 E-value: 1.05e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 48 IGYFFGIDYFSFMLILLSFWIVSLMITASSsvYLFSYHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLI 127
Cdd:TIGR01972 69 ISYHLGVDGISLLLVLLTALLTLLAILASW--ESIQKRVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLI 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 128 LGWGyQPERLQAGIYLIFYTLVASLPLLLVL----FKINNIFN-TLYFPLLFDCGSFYFMFYVFiLFAFLVSMPMFLFHL 202
Cdd:TIGR01972 147 GVWG-GPNRIYAAMKFFLYTLAGSLLMLLAIlglyFLGGGTFDlLELLNLPLPFGVQTWLFLAF-FIAFAVKVPLFPLHT 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 203 WLPSAHVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAH 281
Cdd:TIGR01972 225 WLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFnLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISH 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 282 MSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSL 361
Cdd:TIGR01972 305 MGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTS 384
|
330 340 350
....*....|....*....|....*....|....*...
gi 1811917328 362 NLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTLYMY 399
Cdd:TIGR01972 385 GFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
|
|
| ND4 |
MTH00094 |
NADH dehydrogenase subunit 4; Provisional |
19-419 |
2.32e-40 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 177157 [Multi-domain] Cd Length: 403 Bit Score: 148.90 E-value: 2.32e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 19 NCWWLVHSLMFLLsFIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITASSSVYLFSYHSNFFIFLVllllv 98
Cdd:MTH00094 2 SLLFFFSPFLFFL-FLMFFSFLMFNNYSWSGLFFFFDSFVFVLLIFMMVFILGLVLLSEKNFNLLILSNLLILIC----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 99 tlYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLLFDcgs 178
Cdd:MTH00094 76 --LLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLKNFFFFSLCYFDFFLS--- 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 179 fYFMFYVFILfAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLglsFNYFWLSLSLFGGV 258
Cdd:MTH00094 151 -WEMFFILSL-SFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGSLNFV---YNNFWIIFSLLGMI 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 259 IVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMIN 338
Cdd:MTH00094 226 LSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFS 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 339 LMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTLYMYSYSQHGFYYSGIYTCSLGY 418
Cdd:MTH00094 306 SSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVGL 385
|
.
gi 1811917328 419 F 419
Cdd:MTH00094 386 S 386
|
|
| PRK12561 |
PRK12561 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
53-364 |
6.30e-29 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 118.60 E-value: 6.30e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 53 GIDYFSFMLILLSFWIVSLMITASSSVylfSYHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGY 132
Cdd:PRK12561 56 GVDGLSMPLVLLSGLITTLSIFASWKV---TRKPRLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLLISIWGG 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 133 QpERLQAGIYLIFYTLVASLPLL-----LVLFKINNIFNTLYFPLLFDCGSFYFMFYVFILFAFLVSMPMFLFHLWLPSA 207
Cdd:PRK12561 133 Q-KRLYAATKFILYTALASIFILvaglaLALSGDTFTFDLAELGAKSYPLALELLLYAGFLIAFGVKLPIFPLHTWLPDA 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 208 HVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVI 286
Cdd:PRK12561 212 HGEASAPVSMILAGVLLKMGGYALIRFnVQMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVL 291
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1811917328 287 GGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTmSFWWFLLSSSNMAAPPSLNLF 364
Cdd:PRK12561 292 LGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPK-TFALFTASSMASLALPGMSGF 368
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
113-379 |
5.44e-27 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 112.16 E-value: 5.44e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 113 YIFFESSLIPTMLLILGWGYqPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLL------FDCGSFYFMFyVF 186
Cdd:COG0651 133 FVFFEVMLLASYGLVALGGT-KEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarlaeLDPGLLLAAF-AL 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 187 ILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKII--SFLGLSFNYFWLSLSLFGGVIVSFIC 264
Cdd:COG0651 211 LLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLfgADPALFLGTLLLVLGLLTMLVGALGA 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 265 IRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMS 344
Cdd:COG0651 291 LAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTA 370
|
250 260 270
....*....|....*....|....*....|....*
gi 1811917328 345 FWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPY 379
Cdd:COG0651 371 AAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAW 405
|
|
| PRK06473 |
PRK06473 |
NADH-quinone oxidoreductase subunit M; |
113-338 |
1.74e-22 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 235810 [Multi-domain] Cd Length: 500 Bit Score: 99.77 E-value: 1.74e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 113 YIFFESSLIPTMLLILGWGYQpERLQAGIYLIFYTLVASLPLL---LVLFKINNIFNTLYFPLLFDC--GSFYFMFYVFI 187
Cdd:PRK06473 133 FLFYELELIPLYLLIAIWGGQ-RRGYAATKFLLYTAISGILILvsfLGLVWLSGASSFDYEPLRSHTlpLSTQLLLLAPI 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 188 LFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFIC-IR 266
Cdd:PRK06473 212 LVGFGIKIPLVPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLATWAVVSVLYGASCaIA 291
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1811917328 267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMIN 338
Cdd:PRK06473 292 QKDMKKMVAYSSIGHMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLLN 363
|
|
| PRK02546 |
PRK02546 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
53-358 |
3.29e-22 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 235050 [Multi-domain] Cd Length: 525 Bit Score: 99.01 E-value: 3.29e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 53 GIDYFSFMLILLSFWIVSLMITASSSVylfSYHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGY 132
Cdd:PRK02546 84 GADGLSMPLILLTGFITTLAVLAAWPV---TFKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGG 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 133 QpERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLL------FDCGsFYFMFYVFILFAFLVSMPMFLFHLWLPS 206
Cdd:PRK02546 161 K-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMTalaakdFGLG-FQLLCYAGLLIAYGVKLPIVPLHTWLPD 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 207 AHVEAPISGSMILAGVLLKLGGYGIFRVMkiISFLGLSFNYFWLSLSLFGGVIVSFICIR---QVDLKSLIAYSSVAHMS 283
Cdd:PRK02546 239 AHGEATAPVHMLLAGILLKMGGYALLRMN--AGMLPDAHAQFAPLLIVLGVVNIIYAALTsfaQRNLKRKIAYSSISHMG 316
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1811917328 284 MVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAP 358
Cdd:PRK02546 317 FVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALP 391
|
|
| ndhD |
CHL00011 |
NADH dehydrogenase subunit 4 |
52-419 |
1.41e-20 |
|
NADH dehydrogenase subunit 4
Pssm-ID: 176954 [Multi-domain] Cd Length: 498 Bit Score: 93.86 E-value: 1.41e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 52 FGIDYFSFMLILLSFWIVSLMITASSSVylfSYHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWG 131
Cdd:CHL00011 80 LGIDGLSIGPILLTGFITTLATLAAWPV---TRNSRLFYFLMLAMYSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWG 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 132 YQpERLQAGIYLIFYTLVASLPLLLVLFKI----NNIFnTLYFPLLFDCG---SFYFMFYVFILFAFLVSMPMFLFHLWL 204
Cdd:CHL00011 157 GK-KRLYSATKFILYTAGGSIFLLIGVLGMglygSNEP-TLNFETLANQSypvALEILFYIGFLIAYAVKLPIIPLHTWL 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 205 PSAHVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMS 283
Cdd:CHL00011 235 PDTHGEAHYSTCMLLAGILLKMGAYGLIRInMELLPHAHSIFSPWLVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMG 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 284 MVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNL 363
Cdd:CHL00011 315 FIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGF 394
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 364 FGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTL----YMYSYSQHGFYYSGIYTCSLGYF 419
Cdd:CHL00011 395 VAELIVFFGIITSQKYLLMPKILITFVMAIGMIltpiYLLSMLRQMFYGYKLFNVPNSYF 454
|
|
| ND4 |
MTH00062 |
NADH dehydrogenase subunit 4; Provisional |
26-380 |
1.30e-18 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214413 [Multi-domain] Cd Length: 417 Bit Score: 87.29 E-value: 1.30e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 26 SLMFLLSFIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSfwivsLMITASSSVYLFSYHSNFFIFLVLLLLVTLYCSFS 105
Cdd:MTH00062 15 LLLFCLLYSSGVGCCILVVNNVFNGLFIFDSLSFYLILLV-----LFLGLYSQVMFYNLLSGVSRFFLFLSLIFSILCFC 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 106 SLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLLFDCGSFYFMFYV 185
Cdd:MTH00062 90 VNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSDWGSDDSVSLIVYY 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 186 FILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRvmkIISFLGLSFNYFWLSLSLFGGVIVSFICI 265
Cdd:MTH00062 170 VLSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYR---FCGFIFSGSFLGYLFLCCLFSVFFLITAC 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 266 RQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSF 345
Cdd:MTH00062 247 SELDGKRWLAFLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGINGSLVLRV 326
|
330 340 350
....*....|....*....|....*....|....*
gi 1811917328 346 WWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYM 380
Cdd:MTH00062 327 IVVFSFLSLCSFPPTIQFFCEVFLVSSSFGVLVYL 361
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
185-375 |
3.13e-17 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 83.78 E-value: 3.13e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 185 VFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVM----KIISFLGLSFNYFWLSLSLFGGVIV 260
Cdd:PRK08375 206 GFVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYftvfGGDFRFALGLGWLLAVLALLSMLVG 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 261 SFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLM 340
Cdd:PRK08375 286 SLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRM 365
|
170 180 190
....*....|....*....|....*....|....*
gi 1811917328 341 PTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIIS 375
Cdd:PRK08375 366 PLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVE 400
|
|
| PRK07363 |
PRK07363 |
NADH-quinone oxidoreductase subunit M; |
113-357 |
6.69e-17 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 180945 [Multi-domain] Cd Length: 501 Bit Score: 82.84 E-value: 6.69e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 113 YIFFESSLIPTMLLILGWGYQpERLQAGIYLIFYTLVASLPLLLVLFKIN----------NIFNTLYFPLlfdcgSFYFM 182
Cdd:PRK07363 133 FLFYELELIPFYLLIAIWGGE-KRGYASIKFLIYTAVSGLLVLAAFLGIVwlsgstsfdyDAISTQNLSL-----NTQLI 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 183 FYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMkiisfLGL---SFNYFWLSLSLFGGVI 259
Cdd:PRK07363 207 LLTGLLLGFGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFG-----LQLfpqTWSLVAPGLAIIGTIS 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 260 V---SFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGM 336
Cdd:PRK07363 282 ViygALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGL 361
|
250 260
....*....|....*....|.
gi 1811917328 337 INLMPTMSFWWFLLSSSNMAA 357
Cdd:PRK07363 362 MNPIRGLPLTSALLVLAGMAS 382
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
181-379 |
8.05e-17 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 82.71 E-value: 8.05e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 181 FMFYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLSLS------- 253
Cdd:PRK12667 223 GVALALALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFLYTIFGISPSLIDFRAALSpiliilg 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 254 LFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLIN 333
Cdd:PRK12667 303 AVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDEL 382
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1811917328 334 KGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPY 379
Cdd:PRK12667 383 AGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFY 428
|
|
| PRK06458 |
PRK06458 |
hydrogenase 4 subunit F; Validated |
184-379 |
2.26e-16 |
|
hydrogenase 4 subunit F; Validated
Pssm-ID: 235805 [Multi-domain] Cd Length: 490 Bit Score: 81.13 E-value: 2.26e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 184 YVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIIS-FLGLSF-NYFWLSLSLFGGVIVS 261
Cdd:PRK06458 217 FVFLLIGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDaAIGSDFpGRLLLIFGLLSVLVAA 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 262 FICIRQVDLKSLIAYSSVAHMSMV-----IGGLMtmnwwGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGM 336
Cdd:PRK06458 297 FFLLRQRDIKRLFAYSSIEHMGLIafalgIGGPL-----GIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGL 371
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1811917328 337 INLMPTMSfWWFLLSSSNMAAPPSLNLF-GEFSLLNSIISWSPY 379
Cdd:PRK06458 372 LKVSPLTG-WGLMLGALAIAGMPPFGVFiSEFLILTAGLARGPL 414
|
|
| PRK08676 |
PRK08676 |
hydrogenase membrane subunit; Validated |
178-399 |
3.47e-12 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 68.24 E-value: 3.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 178 SFYFMFYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKII--SFLGLSFNYFWLSLSLF 255
Cdd:PRK08676 203 SVLGASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIF 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 256 GGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKG 335
Cdd:PRK08676 283 SIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRSDRFDRIFD 362
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1811917328 336 MINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTLYMY 399
Cdd:PRK08676 363 VFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLLAASSFAIFL 426
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
177-341 |
4.79e-12 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 67.71 E-value: 4.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 177 GSFYFMFYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGL-----------SF 245
Cdd:PRK08668 192 TGFALIVFLFLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFLLVLYVLPGTKLfsefgtyrgvpLF 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 246 NYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERL 325
Cdd:PRK08668 272 NYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIYRT 351
|
170
....*....|....*.
gi 1811917328 326 GSRSLLINKGMINLMP 341
Cdd:PRK08668 352 GTTKISEMGGLIEKMP 367
|
|
| PRK08667 |
PRK08667 |
hydrogenase membrane subunit; Validated |
114-374 |
2.32e-10 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 236331 [Multi-domain] Cd Length: 644 Bit Score: 62.44 E-value: 2.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 114 IFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLLFDCGSFYFMFYVFILFAFLV 193
Cdd:PRK08667 138 FFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILSLVFLLLFLGFGI 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 194 SMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSL 273
Cdd:PRK08667 218 KAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGVLILLAGSISALLGVIYALKEHDLKGL 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 274 IAYSSVAHMSMV---IG--------GLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPT 342
Cdd:PRK08667 298 LAYSSIENIGIIlmgIGlyvifgvyGLDTLALLALGGALFHSLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPY 377
|
250 260 270
....*....|....*....|....*....|..
gi 1811917328 343 MSFWWFLLSSSNMAAPPSLNLFGEFSLLNSII 374
Cdd:PRK08667 378 TSALFLVGAVSIAALPPFNGFASELLLYESFF 409
|
|
| PRK12662 |
PRK12662 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
186-375 |
7.46e-10 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 183662 [Multi-domain] Cd Length: 492 Bit Score: 60.90 E-value: 7.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 186 FILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKII-----SFLGLSFNYFWLSLSLFGGVIV 260
Cdd:PRK12662 214 FIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDVfkanfVFTTLPFNNVFMILAALAIVFG 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 261 SFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLM 340
Cdd:PRK12662 294 SVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLWKSM 373
|
170 180 190
....*....|....*....|....*....|....*
gi 1811917328 341 PTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIIS 375
Cdd:PRK12662 374 PKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIK 408
|
|
| PRK07234 |
PRK07234 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
187-324 |
1.75e-09 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235978 [Multi-domain] Cd Length: 470 Bit Score: 59.58 E-value: 1.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 187 ILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLSLSLFGgvivSFICIR 266
Cdd:PRK07234 190 IALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVRIFGVGTALLG----VLFALL 265
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1811917328 267 QVDLKSLIAYSSVAHMSMVIGGlmtmnwwGFMGSLsLMVGHGLCSSGLFCLSNIIYER 324
Cdd:PRK07234 266 EKDLKRMLAFSTISQLGFILAA-------PLVGGL-YALAHGLVKSTLFLCAGALPSR 315
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
113-364 |
4.94e-09 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 58.18 E-value: 4.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 113 YIFFESSLIPTMLLILGWGYQPERLQAGIYlifYTLVASLPLLLVLFKINNIF---NTLYFPLLFDCGSFYFMFYVFILF 189
Cdd:PRK08376 147 FVFLEIMSIASYALVAFRNDTWEAIEAGIK---YMFVGSLASSMVLLGIALLYgqyGTLNMAYLAVKMSENPTVVAKIAL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 190 AFLVSMPMFL-----FHLWLPSAHVEAPISGSMILagVLLKLGG-YGIFRVmkIISFLGLSFNYF---WL-----SLSLF 255
Cdd:PRK08376 224 ALFIAGLAMKsgavpVHMWLPDAYPAAPSSISAML--LVIKQAGlYALARV--LFSIYGPAINLAtvgWViiilgCLTMF 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 256 GGVIVSFIcirQVDLKSLIAYSSVAH---------MSMVIGGLMTMNWWGFM---GSLSLMVGHGLCSSGLFCLSNIIYE 323
Cdd:PRK08376 300 VGVAMAVV---QKDVKRLLAYHSVSQigymllglgVGLAALGDPAMASYGEIalaGGIYHIVNHALYKALLFLTAGAVIY 376
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1811917328 324 RLGSRSLLINKGMINLMPTMSFwWFLLSSSNMAAPPSLNLF 364
Cdd:PRK08376 377 ETGTRNLNELGGLARTMPKTTI-AFLIGAAAIVGLPPFNGF 416
|
|
| PRK06521 |
PRK06521 |
hydrogenase 4 subunit B; Validated |
185-364 |
1.50e-08 |
|
hydrogenase 4 subunit B; Validated
Pssm-ID: 235820 [Multi-domain] Cd Length: 667 Bit Score: 56.82 E-value: 1.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 185 VFIL--FAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVmkIISFLG---LSFNYFWLSLSLFGGVI 259
Cdd:PRK06521 212 VFLLalFGFGAKAGLVPLHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRV--VFDLLGapgWWWGVLVLALGAISAVL 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 260 VSFICIRQVDLKSLIAYSSVAHM---SMVIG--------GLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSR 328
Cdd:PRK06521 290 GVLYALAEHDLKRLLAYSTIENIgiiFVGLGlamvfiayGMPLLAALALTAALYHLLNHALFKSLLFLGAGAVLHATGTR 369
|
170 180 190
....*....|....*....|....*....|....*.
gi 1811917328 329 SLLINKGMINLMPTMSfWWFLLSSSNMAAPPSLNLF 364
Cdd:PRK06521 370 DMEKLGGLIRRMPWTA-WAFLIGCLAISALPPLNGF 404
|
|
| Oxidored_q5_N |
pfam01059 |
NADH-ubiquinone oxidoreductase chain 4, amino terminus; |
1-91 |
3.59e-08 |
|
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
Pssm-ID: 366442 [Multi-domain] Cd Length: 110 Bit Score: 51.37 E-value: 3.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 1 MLKYLLMLCFLIPIGLLENCWWL-----VHSLMFLLSFIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITA 75
Cdd:pfam01059 1 MLKILLPTLMLIPLTFLSKPKWLwttstLYSLLLALLSLLLLNNPSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80
|
90
....*....|....*...
gi 1811917328 76 SSSVYLFS--YHSNFFIF 91
Cdd:pfam01059 81 SQKHLKSEpnNRQRTFIF 98
|
|
| PRK12646 |
PRK12646 |
DUF4040 family protein; |
113-364 |
5.95e-08 |
|
DUF4040 family protein;
Pssm-ID: 183646 [Multi-domain] Cd Length: 800 Bit Score: 55.15 E-value: 5.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 113 YIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLLF-------DCGSFYFMFYV 185
Cdd:PRK12646 136 YVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGFIMLYIMTGTNNITEILgqadhikNHGLFIPMIFM 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 186 FILFAFLVSmPMFLFHLWLPSAhVEAPISGSMIL-AGVLLKLGgygIFRVMKIISFLGLSFNYFWLSLslFGGVIV---- 260
Cdd:PRK12646 216 FLLGAFTKS-AQFPFHIWLPRA-MAAPTPVSAYLhSATMVKAG---IFLLFRFTPLLGLSNMYIYIVT--FVGLITmlfg 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 261 SFICIRQVDLKSLIAYSSVAH----MSMV-IGGLMTMNWWGFMGSLSLMV---------GHGLCSSGLFCLSNIIYERLG 326
Cdd:PRK12646 289 SITALKQWDLKGILAYSTISQlgmiMAMVgIGGGYAQHQQDAIASIYVFVlfaalfhlmNHAIFKCALFMGVGIIDHEAG 368
|
250 260 270
....*....|....*....|....*....|....*...
gi 1811917328 327 SRSLLINKGMINLMPTMSFwWFLLSSSNMAAPPSLNLF 364
Cdd:PRK12646 369 TRDIRILSGMRQLFPKMNL-VMTIAALSMAGVPFLNGF 405
|
|
| PRK12665 |
PRK12665 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
184-365 |
1.16e-07 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237165 [Multi-domain] Cd Length: 521 Bit Score: 53.82 E-value: 1.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 184 YVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIIsFLGLSFNYFWLSLSLFGGVIVSFI 263
Cdd:PRK12665 212 FAVLLVAFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLL-FPGGGLDTLLMVVALLTMVVGILG 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 264 CIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTM 343
Cdd:PRK12665 291 AIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLRRLGGLAKASPLL 370
|
170 180
....*....|....*....|..
gi 1811917328 344 SFWWFLlsssnmaapPSLNLFG 365
Cdd:PRK12665 371 AVLFFV---------PALNLGG 383
|
|
| PRK08377 |
PRK08377 |
NADH dehydrogenase subunit N; Validated |
187-370 |
1.33e-07 |
|
NADH dehydrogenase subunit N; Validated
Pssm-ID: 181406 [Multi-domain] Cd Length: 494 Bit Score: 53.62 E-value: 1.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 187 ILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWL--SLSLFGGVIVSFIC 264
Cdd:PRK08377 212 LIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANGWSSVLKLviIMATLTVFFAELSA 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 265 IRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMS 344
Cdd:PRK08377 292 LRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTA 371
|
170 180
....*....|....*....|....*.
gi 1811917328 345 FWWFLLSSSNMAAPPSLNLFGEFSLL 370
Cdd:PRK08377 372 LALTIGALSTVGIPLFNVFWSKFRII 397
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
190-361 |
9.06e-07 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 51.58 E-value: 9.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 190 AFLVSMPMFL------FHLWLPSAHVEA-PIS-----GSMILAGVLLKLGGYGIFRVMKIisflglsFNYFWLSLSLFGG 257
Cdd:PRK12650 211 AVLIAVAAFTksaqfpFHFWLPEAMAAItPVSaflhaAAVVKAGIYLLLRFSPVFHDVAV-------WNWLLIIVGMITA 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 258 VIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMI 337
Cdd:PRK12650 284 LMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGSLW 363
|
170 180
....*....|....*....|....
gi 1811917328 338 NLMPtMSFWWFLLSSSNMAAPPSL 361
Cdd:PRK12650 364 RRMP-FTFVSVTIAALSMAAVPPL 386
|
|
| PRK08042 |
PRK08042 |
formate hydrogenlyase subunit 3; Reviewed |
201-372 |
1.30e-06 |
|
formate hydrogenlyase subunit 3; Reviewed
Pssm-ID: 181206 [Multi-domain] Cd Length: 593 Bit Score: 50.60 E-value: 1.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 201 HLWLPSAHVEAPISGSMILAGVLLKLGGYGIFrvmkIISFLGLSFNYFWLSLSLFGGVIVSFI----CIRQVDLKSLIAY 276
Cdd:PRK08042 200 HGWVPQAHANASAPAAALFSTVVMKIGLLGIL----TLSLLGGNAPLWWGVALLVLGMITAFVgglyALMEHNIQRLLAY 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 277 SSVAHMSMVIGGL-----------MTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSF 345
Cdd:PRK08042 276 HTLENIGIILLGLgagvtgialeqPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISI 355
|
170 180
....*....|....*....|....*...
gi 1811917328 346 wWFLLSSSNMAAPPSLNLF-GEFSLLNS 372
Cdd:PRK08042 356 -AMLVGLMAMAALPPLNGFaGEWVIYQS 382
|
|
| PRK06589 |
PRK06589 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
59-370 |
1.15e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 44.42 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 59 FMLILLSFWIVSLMITASSSVYLFSYHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLIlGWGYQPERLQ 138
Cdd:PRK06589 88 FLLLIGFLWICALLYTPKYLAINNIDSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLI-GHTRNNISLS 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 139 AGI-YLIFYTLVASLPLLLVLFKINNIFNTLYFPllfDCGSFYFMFYVFILFAF---LVSMPMFLFHLWLPSAHVEAPIS 214
Cdd:PRK06589 167 GGYkYLKILMISALLLFLPAVILIYTKTGNLDFV---SGGLFSKNQSIILLLMFiygIAKTAIFPVHSWLPAAMVAHYPV 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 215 GSMILAGVLLKLGGYGIFRVMKIISFLG-----LSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGL 289
Cdd:PRK06589 244 SALLHAVIVVKTGLFCIYKILLYIFGLSylqriFAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSA 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 290 MTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSL 369
Cdd:PRK06589 324 FILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLI 403
|
.
gi 1811917328 370 L 370
Cdd:PRK06589 404 L 404
|
|
| PRK06525 |
PRK06525 |
hydrogenase 4 subunit D; Validated |
184-370 |
2.64e-04 |
|
hydrogenase 4 subunit D; Validated
Pssm-ID: 180606 [Multi-domain] Cd Length: 479 Bit Score: 43.04 E-value: 2.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 184 YVFILFAFLVSMPMFLFHLWLPSAhVEAPISGSMIL-AGVLLKLGGYGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSF 262
Cdd:PRK06525 210 FLGILFAAWGKSAQLPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 263 ICIRQVDLKSLIAYSSVAHMSMVIGGLMTM---NWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINL 339
Cdd:PRK06525 289 MYLPQQDMKRLLAYSTITQLGYMFFGLSLAilgSRLALEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKK 368
|
170 180 190
....*....|....*....|....*....|.
gi 1811917328 340 MPTMSFWWFLLSSSNMAAPPSLNLFGEFSLL 370
Cdd:PRK06525 369 LPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
|
|
| PRK12647 |
PRK12647 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
113-365 |
2.78e-04 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237156 [Multi-domain] Cd Length: 761 Bit Score: 43.37 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 113 YIFFESSLIPTMLLIlgwGYQPER-------LQAgiylIFYTLVASLPLLLVLFKINNIFNTLYFPLLFDCG------SF 179
Cdd:PRK12647 121 FVFWELTSITSFLLI---GFNHEReaarraaLQA----LLVTGGGGLALLAGLILLGNVTGTYSLSELLASGdvirehPL 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 180 YFMFYVFILFAFLVSMPMFLFHLWLPSAhVEAPI-------SGSMILAGVLLklggygifrVMKIISFLGLSFNYFWLsL 252
Cdd:PRK12647 194 YLAILLLVLGGAFTKSAQFPFHFWLPNA-MEAPTpvsaylhSATMVKAGIYL---------LARLNPVLGGTPLWQTI-L 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 253 SLFGG---VIVSFICIRQVDLKSLIAYSSVahmsMVIGGLMTMNWWG----FMGSLSLMVGHGLCSSGLFCLSNIIYERL 325
Cdd:PRK12647 263 PLFGGltmLTGALLAVRQTDLKLILAYSTV----SALGTLVMLLGLGselaIKAAVLFLVAHSLYKGALFMVAGIIDHET 338
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1811917328 326 GSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPslnLFG 365
Cdd:PRK12647 339 GTRDITKLGGLRRAMPITAAAALLAALSMAGLPP---LFG 375
|
|
| PRK12649 |
PRK12649 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
113-364 |
8.01e-04 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 183649 [Multi-domain] Cd Length: 789 Bit Score: 41.74 E-value: 8.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 113 YIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLLFDCGS---------FYFMF 183
Cdd:PRK12649 137 FIFWELTSITSFMLIGYWRHRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghpLFLIT 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 184 YVFILFAFLVSMPMFLFHLWLPSAhVEAPISGSMIL-AGVLLKLGGYGIFRVMKIISflGLSFNYFWLS-LSLFGGVIVS 261
Cdd:PRK12649 217 LILIFIGAAAKSAQGPFYIWLPNA-MEAPTPVSAFLhSATMVKAGVYLVARIHPIFS--GTEAWFILVSgTGMITMVLAG 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 262 FICIRQVDLKSLIAYSSVAHMSMviggLMTMNWW--------GFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLIN 333
Cdd:PRK12649 294 FLAFRQTDIKAILAYSTISQLAY----LMTMYGYttyhepglGVAAATFHLLNHATFKACLFLVAGIVAHEAATRDIRKL 369
|
250 260 270
....*....|....*....|....*....|.
gi 1811917328 334 KGMINLMPtMSFWWFLLSSSNMAAPPSLNLF 364
Cdd:PRK12649 370 GGLRKEMP-ITFIVASIAALAMAGIPPLNGF 399
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
185-315 |
8.76e-04 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 41.34 E-value: 8.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 185 VFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLlKLGGYGIFRVMKIISFLGLSF---NYFWLsLSLFGGVIVS 261
Cdd:PRK05777 208 VFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAP-KIAAFAVLLRLLVVAFGGLSEdwqQVLAI-IAIASMLVGN 285
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1811917328 262 FICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLF 315
Cdd:PRK05777 286 LAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMTLGAF 339
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
185-315 |
1.22e-03 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 40.87 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 185 VFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLlKLGGYGIFrvMKIISFLGLSFNYFWLS-------LSLFGG 257
Cdd:COG1007 207 VLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAP-KIAAFAAL--LRLLVEAFPGLAADWQLllavlavLSMTVG 283
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1811917328 258 vivSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLF 315
Cdd:COG1007 284 ---NLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMNLGAF 338
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|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
167-315 |
4.20e-03 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 39.16 E-value: 4.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 167 TLYFPLLFDCGSFYFMFYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMK-IISFLGLSF 245
Cdd:TIGR01770 189 LLFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLyILFGFSEAW 268
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 246 NYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLF 315
Cdd:TIGR01770 269 QIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMSLGAF 338
|
|
| PRK12663 |
PRK12663 |
Na+/H+ antiporter subunit D; |
113-359 |
9.32e-03 |
|
Na+/H+ antiporter subunit D;
Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 38.39 E-value: 9.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 113 YIFFESSLIPTMLLILgWGYQPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLL------FDCGSFYFMFYVF 186
Cdd:PRK12663 134 YVWFEVMLIASFVLIT-LGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIamrlndMGDTATLTTIALL 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 187 ILFAFLVSMPMFLFHlWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKII----SFLGLSFNYFWLSLSLFGGVIVSf 262
Cdd:PRK12663 213 FLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLfpqeRELLHPLLATMAAITMVIGALGA- 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1811917328 263 icIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPT 342
Cdd:PRK12663 291 --LAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGLYRKEPL 368
|
250
....*....|....*..
gi 1811917328 343 MSFWWFLLSSSNMAAPP 359
Cdd:PRK12663 369 FGALFLILIFAIGGLPP 385
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