|
Name |
Accession |
Description |
Interval |
E-value |
| IFR3_antag super family |
cl20679 |
Papain-like auto-proteinase; The replicase polyproteins of the Nidoviruses such as, porcine ... |
1-249 |
1.29e-172 |
|
Papain-like auto-proteinase; The replicase polyproteins of the Nidoviruses such as, porcine arterivirus PRRSV, equine arterivirus EAV, human coronavirus 229E, and severe acute respiratory syndrome coronavirus (SARS-CoV), are predicted to be cleaved into 14 non-structural proteins (nsps) by the nsp4 main proteinase pfam05579 and three accessory proteinases residing in nsp1-alpha, nsp1-beta and nsp2. This family is the two nsp1 proteins that together act in a papain-like way to separate off the rest of the various functional domains of the polyprotein. Once inside the host cell, this nsp1 interferes with the regulation of interferon, thereby enabling the virus to replicate.
The actual alignment was detected with superfamily member pfam14754:
Pssm-ID: 291424 Cd Length: 249 Bit Score: 520.77 E-value: 1.29e-172
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 1 MATFSATGFGGSFVRDWSLDLPATCEHGAGLCCEVDGSTLCAECFLGCEGVEQCPGLFMGLLKLASPVPVGHKFLIGWYR 80
Cdd:pfam14754 1 MATFSATGFGGSFVRDWSLDLPDACEHGAGLCCEVDGSTLCAECFRGCEGMEQCPGLFMGLLKLASPVPVGHKFLIGWYR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 81 AAKVTGRYNFLELLQHPAFAQLRVVDARLAIEEASVFISTDHASAKRFPGARFALTPVYANPWVVSPTANSLVVTIDQEQ 160
Cdd:pfam14754 81 AAKVTGRYNFLELLQHPAFAQLRVVDARLAIEEASVFISTDHASAKRFPGARFALTPVYANAWVVSPAANSLIVTTDQEQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 161 DGFCWLKLLPPDRREAGLRLYYNHYREQRTGWLSKTGLRLWLGDLGLGVNSSSGVLKFHIMRSSPQRAWHITTRSCKLKS 240
Cdd:pfam14754 161 DGFCWLKLLPPDRREAGLRLYYNHYREQRTGWLSKTGLRLWLGDLGLGINASSGGLKFHIMRGSPQRAWHITTRSCKLKS 240
|
....*....
gi 1808512276 241 YYVCDISEA 249
Cdd:pfam14754 241 YYVCDISEA 249
|
|
| Peptidase_S32 super family |
cl21733 |
Equine arteritis virus serine endopeptidase S32; Serine peptidases involved in processing ... |
963-1269 |
1.33e-133 |
|
Equine arteritis virus serine endopeptidase S32; Serine peptidases involved in processing nidovirus polyprotein.
The actual alignment was detected with superfamily member pfam05579:
Pssm-ID: 253263 Cd Length: 297 Bit Score: 417.26 E-value: 1.33e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 963 LATLFVNLFfpqatLVTMGYWACVAALAVYSLMGLRVK-VNVPMCVTPAHFLLLARTAGQSReqmlrVSAAAPANSLLGV 1041
Cdd:pfam05579 1 LTMLWVQFF-----LVFVNFWAGVAALVVLISLWLLARyTNVAGLVTPYDIHLVTSSPRGAA-----ALATAPEGTYLAA 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 1042 ARDCYVTGTTRLYIPKEGGMVFEGLFRSPKARGNVGFVAGSSYGTGSVWTRNNEVVVLTASHVVGrANMATLKIGDTMLT 1121
Cdd:pfam05579 71 VRRAALTGRTCLFVPSNFGSVLEGLFRTRKPALNVVSVFGSSSGSGGVFTINGNVVVVTASHVLG-GNKARVSGVGFNQM 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 1122 LT*KKNG***EAVTtqSELPGNWPQLNYAQPTTGPASWCTATGDEEGLLSGEVCLAWTTSGDSGSAVVQGDA-VVGVHTG 1200
Cdd:pfam05579 150 LTFKTNGDYAFAVV--AEWPGAAPKLKFAQGYTGRAYWSTSTGVEPGLLGKGFAFCFTKCGDSGSPVITEDGnLVGVHTG 227
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 1201 SNTSGVAYVTTPSGKLLGADTVTLSSLSKHFTGPLSPIPK-DIPDNIIADVDAVPRSLAMLIDGLSNRES 1269
Cdd:pfam05579 228 SNKRGSGMVTTPSGKTLGMAPVKLSELSKHFAGPGVPVPTvKLPKNIIVDVEAVPSDLAALLESLPNLEG 297
|
|
| Nsp2_AV |
pfam14755 |
Nsp2, transmembrane domain; This domain is found in Nsp2 protein of the RNA-arteriviruses, ... |
361-508 |
5.25e-97 |
|
Nsp2, transmembrane domain; This domain is found in Nsp2 protein of the RNA-arteriviruses, such as porcine arterivirus PRRSV and equine arterivirus EAV, which is a tetraspanning transmembrane protein. This domain resides adjacent to the peptidase C33 catalytic domain of Nsp2.
:
Pssm-ID: 373271 [Multi-domain] Cd Length: 148 Bit Score: 308.45 E-value: 5.25e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 361 GPPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPAPRTRPSASPPEEVKDTVTVPPVPKPRTKLAKPSPAQAPTPAP 440
Cdd:pfam14755 1 GPPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPAPRTRPSASSSGDVKDPATVPPVPKPRTKLAKPSPTQAPTPAP 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1808512276 441 RTRLQDAAKQEPPAGTTAASASVPRWRVAKTVYSTAERIRTGLIHRAQSVGDSLVQALPLKTPAVQRY 508
Cdd:pfam14755 81 RTRLQDASKQEPPVGTAAAPASAPKWRVAKTVYSSAERIRTELVQRARSIGDVLVQALPLKTPAVQRY 148
|
|
| Arteri_nsp7a |
pfam16749 |
Arterivirus nonstructural protein 7 alpha; Nonstructural protein 7 alpha is likely to have a ... |
1454-1573 |
2.39e-45 |
|
Arterivirus nonstructural protein 7 alpha; Nonstructural protein 7 alpha is likely to have a role in viral RNA synthesis.
:
Pssm-ID: 374774 Cd Length: 128 Bit Score: 159.88 E-value: 2.39e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 1454 LTATLA-ALTDDDFQFLSDVLDCRAVRSAMNLRAALTSFQVAQYRNILNASLQVDRDAARSRRLMAKLADFA--VEQEVT 1530
Cdd:pfam16749 1 LTAALAcALSDDDLDFLSQLVDCKAFVSASNMRNALGDFIESAYAKALRASLASVVAVAKSRRALAKLEDFAdtVSPQLS 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1808512276 1531 AGDRVVVIdGLDHMAHFK------GDLVLVPLTTKVVGGSRCTICDVVK 1573
Cdd:pfam16749 81 PGDPVVLL-GKTPVGEIFdiyvgdTKHVLRPIETRVVAGSKCTICTVVV 128
|
|
| av_Nsp3_ER-remodelling |
cd22528 |
intracellular membrane remodeller motif of arterivirus non-structural protein 3 (Nsp3); This ... |
846-902 |
2.01e-22 |
|
intracellular membrane remodeller motif of arterivirus non-structural protein 3 (Nsp3); This domain is present in subunit Nsp3 of RNA-arteriviruses, such as porcine arterivirus PRRSV and equine arterivirus EAV. Nsp3 proteins are localized to the ER and appear to be essential for formation of double-membrane vesicles that originate from the ER during the life-cycle of the virus. Arterivirus Nsp3 is a predicted tetra-spanning transmembrane protein containing four transmembrane helices, with the N- and C-termini of the protein residing in the cytoplasm. It contains a cluster of four highly conserved cysteine residues that are predicted to reside in the first luminal domain of the protein. These conserved cysteines play a key role in the formation of double-membrane vesicles (DMVs); mutagenesis of each completely blocked DMV formation.
:
Pssm-ID: 412095 Cd Length: 57 Bit Score: 92.00 E-value: 2.01e-22
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1808512276 846 STFTCLPIKCGIGTRDPFCRRVFSVPVTKTQEHCHAGMCASAEGISLDTLGLTQLQS 902
Cdd:cd22528 1 GLYLQSPVSCGIGTNDPFCRNPFGVPVVGTQGVCHSGYCASAQGISLPTSLLTQLSS 57
|
|
| Peptidase_C33 super family |
cl05135 |
Equine arterivirus Nsp2-type cysteine proteinase; Corresponds to Merops family C33. These ... |
261-357 |
3.74e-14 |
|
Equine arterivirus Nsp2-type cysteine proteinase; Corresponds to Merops family C33. These peptidases are involved in viral polyprotein processing in replication.
The actual alignment was detected with superfamily member pfam05412:
Pssm-ID: 114153 Cd Length: 108 Bit Score: 70.33 E-value: 3.74e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 261 GYNPPGDGACGYRCLAFMNGATAVSAGCS--------SDLWCDDELAYRVFQLSpTFTVTIPGGRVCPNARYVMICDKQH 332
Cdd:pfam05412 1 GYSPPGDGACGWHCISAIANRMFNDKFTTtltecsrpSDDWASDQDLVQAIQTL-RLPATLDRNGACPSAKYKLKLVGQH 79
|
90 100
....*....|....*....|....*.
gi 1808512276 333 WRVKRAKGVGL-CLDENCFRGTCDCQ 357
Cdd:pfam05412 80 WTVTVRKGMAPgLLSPECVRGVCGHE 105
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| IFR3_antag |
pfam14754 |
Papain-like auto-proteinase; The replicase polyproteins of the Nidoviruses such as, porcine ... |
1-249 |
1.29e-172 |
|
Papain-like auto-proteinase; The replicase polyproteins of the Nidoviruses such as, porcine arterivirus PRRSV, equine arterivirus EAV, human coronavirus 229E, and severe acute respiratory syndrome coronavirus (SARS-CoV), are predicted to be cleaved into 14 non-structural proteins (nsps) by the nsp4 main proteinase pfam05579 and three accessory proteinases residing in nsp1-alpha, nsp1-beta and nsp2. This family is the two nsp1 proteins that together act in a papain-like way to separate off the rest of the various functional domains of the polyprotein. Once inside the host cell, this nsp1 interferes with the regulation of interferon, thereby enabling the virus to replicate.
Pssm-ID: 291424 Cd Length: 249 Bit Score: 520.77 E-value: 1.29e-172
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 1 MATFSATGFGGSFVRDWSLDLPATCEHGAGLCCEVDGSTLCAECFLGCEGVEQCPGLFMGLLKLASPVPVGHKFLIGWYR 80
Cdd:pfam14754 1 MATFSATGFGGSFVRDWSLDLPDACEHGAGLCCEVDGSTLCAECFRGCEGMEQCPGLFMGLLKLASPVPVGHKFLIGWYR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 81 AAKVTGRYNFLELLQHPAFAQLRVVDARLAIEEASVFISTDHASAKRFPGARFALTPVYANPWVVSPTANSLVVTIDQEQ 160
Cdd:pfam14754 81 AAKVTGRYNFLELLQHPAFAQLRVVDARLAIEEASVFISTDHASAKRFPGARFALTPVYANAWVVSPAANSLIVTTDQEQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 161 DGFCWLKLLPPDRREAGLRLYYNHYREQRTGWLSKTGLRLWLGDLGLGVNSSSGVLKFHIMRSSPQRAWHITTRSCKLKS 240
Cdd:pfam14754 161 DGFCWLKLLPPDRREAGLRLYYNHYREQRTGWLSKTGLRLWLGDLGLGINASSGGLKFHIMRGSPQRAWHITTRSCKLKS 240
|
....*....
gi 1808512276 241 YYVCDISEA 249
Cdd:pfam14754 241 YYVCDISEA 249
|
|
| Peptidase_S32 |
pfam05579 |
Equine arteritis virus serine endopeptidase S32; Serine peptidases involved in processing ... |
963-1269 |
1.33e-133 |
|
Equine arteritis virus serine endopeptidase S32; Serine peptidases involved in processing nidovirus polyprotein.
Pssm-ID: 253263 Cd Length: 297 Bit Score: 417.26 E-value: 1.33e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 963 LATLFVNLFfpqatLVTMGYWACVAALAVYSLMGLRVK-VNVPMCVTPAHFLLLARTAGQSReqmlrVSAAAPANSLLGV 1041
Cdd:pfam05579 1 LTMLWVQFF-----LVFVNFWAGVAALVVLISLWLLARyTNVAGLVTPYDIHLVTSSPRGAA-----ALATAPEGTYLAA 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 1042 ARDCYVTGTTRLYIPKEGGMVFEGLFRSPKARGNVGFVAGSSYGTGSVWTRNNEVVVLTASHVVGrANMATLKIGDTMLT 1121
Cdd:pfam05579 71 VRRAALTGRTCLFVPSNFGSVLEGLFRTRKPALNVVSVFGSSSGSGGVFTINGNVVVVTASHVLG-GNKARVSGVGFNQM 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 1122 LT*KKNG***EAVTtqSELPGNWPQLNYAQPTTGPASWCTATGDEEGLLSGEVCLAWTTSGDSGSAVVQGDA-VVGVHTG 1200
Cdd:pfam05579 150 LTFKTNGDYAFAVV--AEWPGAAPKLKFAQGYTGRAYWSTSTGVEPGLLGKGFAFCFTKCGDSGSPVITEDGnLVGVHTG 227
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 1201 SNTSGVAYVTTPSGKLLGADTVTLSSLSKHFTGPLSPIPK-DIPDNIIADVDAVPRSLAMLIDGLSNRES 1269
Cdd:pfam05579 228 SNKRGSGMVTTPSGKTLGMAPVKLSELSKHFAGPGVPVPTvKLPKNIIVDVEAVPSDLAALLESLPNLEG 297
|
|
| Nsp2_AV |
pfam14755 |
Nsp2, transmembrane domain; This domain is found in Nsp2 protein of the RNA-arteriviruses, ... |
361-508 |
5.25e-97 |
|
Nsp2, transmembrane domain; This domain is found in Nsp2 protein of the RNA-arteriviruses, such as porcine arterivirus PRRSV and equine arterivirus EAV, which is a tetraspanning transmembrane protein. This domain resides adjacent to the peptidase C33 catalytic domain of Nsp2.
Pssm-ID: 373271 [Multi-domain] Cd Length: 148 Bit Score: 308.45 E-value: 5.25e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 361 GPPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPAPRTRPSASPPEEVKDTVTVPPVPKPRTKLAKPSPAQAPTPAP 440
Cdd:pfam14755 1 GPPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPAPRTRPSASSSGDVKDPATVPPVPKPRTKLAKPSPTQAPTPAP 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1808512276 441 RTRLQDAAKQEPPAGTTAASASVPRWRVAKTVYSTAERIRTGLIHRAQSVGDSLVQALPLKTPAVQRY 508
Cdd:pfam14755 81 RTRLQDASKQEPPVGTAAAPASAPKWRVAKTVYSSAERIRTELVQRARSIGDVLVQALPLKTPAVQRY 148
|
|
| Arteri_nsp7a |
pfam16749 |
Arterivirus nonstructural protein 7 alpha; Nonstructural protein 7 alpha is likely to have a ... |
1454-1573 |
2.39e-45 |
|
Arterivirus nonstructural protein 7 alpha; Nonstructural protein 7 alpha is likely to have a role in viral RNA synthesis.
Pssm-ID: 374774 Cd Length: 128 Bit Score: 159.88 E-value: 2.39e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 1454 LTATLA-ALTDDDFQFLSDVLDCRAVRSAMNLRAALTSFQVAQYRNILNASLQVDRDAARSRRLMAKLADFA--VEQEVT 1530
Cdd:pfam16749 1 LTAALAcALSDDDLDFLSQLVDCKAFVSASNMRNALGDFIESAYAKALRASLASVVAVAKSRRALAKLEDFAdtVSPQLS 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1808512276 1531 AGDRVVVIdGLDHMAHFK------GDLVLVPLTTKVVGGSRCTICDVVK 1573
Cdd:pfam16749 81 PGDPVVLL-GKTPVGEIFdiyvgdTKHVLRPIETRVVAGSKCTICTVVV 128
|
|
| av_Nsp3_ER-remodelling |
cd22528 |
intracellular membrane remodeller motif of arterivirus non-structural protein 3 (Nsp3); This ... |
846-902 |
2.01e-22 |
|
intracellular membrane remodeller motif of arterivirus non-structural protein 3 (Nsp3); This domain is present in subunit Nsp3 of RNA-arteriviruses, such as porcine arterivirus PRRSV and equine arterivirus EAV. Nsp3 proteins are localized to the ER and appear to be essential for formation of double-membrane vesicles that originate from the ER during the life-cycle of the virus. Arterivirus Nsp3 is a predicted tetra-spanning transmembrane protein containing four transmembrane helices, with the N- and C-termini of the protein residing in the cytoplasm. It contains a cluster of four highly conserved cysteine residues that are predicted to reside in the first luminal domain of the protein. These conserved cysteines play a key role in the formation of double-membrane vesicles (DMVs); mutagenesis of each completely blocked DMV formation.
Pssm-ID: 412095 Cd Length: 57 Bit Score: 92.00 E-value: 2.01e-22
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1808512276 846 STFTCLPIKCGIGTRDPFCRRVFSVPVTKTQEHCHAGMCASAEGISLDTLGLTQLQS 902
Cdd:cd22528 1 GLYLQSPVSCGIGTNDPFCRNPFGVPVVGTQGVCHSGYCASAQGISLPTSLLTQLSS 57
|
|
| Peptidase_C33 |
pfam05412 |
Equine arterivirus Nsp2-type cysteine proteinase; Corresponds to Merops family C33. These ... |
261-357 |
3.74e-14 |
|
Equine arterivirus Nsp2-type cysteine proteinase; Corresponds to Merops family C33. These peptidases are involved in viral polyprotein processing in replication.
Pssm-ID: 114153 Cd Length: 108 Bit Score: 70.33 E-value: 3.74e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 261 GYNPPGDGACGYRCLAFMNGATAVSAGCS--------SDLWCDDELAYRVFQLSpTFTVTIPGGRVCPNARYVMICDKQH 332
Cdd:pfam05412 1 GYSPPGDGACGWHCISAIANRMFNDKFTTtltecsrpSDDWASDQDLVQAIQTL-RLPATLDRNGACPSAKYKLKLVGQH 79
|
90 100
....*....|....*....|....*.
gi 1808512276 333 WRVKRAKGVGL-CLDENCFRGTCDCQ 357
Cdd:pfam05412 80 WTVTVRKGMAPgLLSPECVRGVCGHE 105
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
358-464 |
2.01e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 49.60 E-value: 2.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 358 RRSGPPPAPVSASvldhilEAATFGNVRVVATEEQQRPVPAPRTRPSASPPEEVKDTVTVPPVPKPRTKLAKPSPAQAPT 437
Cdd:PRK07764 400 SAAAAAPAAAPAP------AAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAA 473
|
90 100
....*....|....*....|....*..
gi 1808512276 438 PAPRTRLQDAAKQEPPAGTTAASASVP 464
Cdd:PRK07764 474 PEPTAAPAPAPPAAPAPAAAPAAPAAP 500
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
357-466 |
1.36e-03 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 42.83 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 357 QRRSGPPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPAPRTRPSASPPEEVKD--TVTVPPVPKPRTKLAKPSPA- 433
Cdd:NF040712 220 APAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAAEPDEATRDagEPPAPGAAETPEAAEPPAPAp 299
|
90 100 110
....*....|....*....|....*....|....*..
gi 1808512276 434 QAPTPAPRTRLQDAAKQEPPAGTTAAS----ASVPRW 466
Cdd:NF040712 300 AAPAAPAAPEAEEPARPEPPPAPKPKRrrrrASVPSW 336
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| IFR3_antag |
pfam14754 |
Papain-like auto-proteinase; The replicase polyproteins of the Nidoviruses such as, porcine ... |
1-249 |
1.29e-172 |
|
Papain-like auto-proteinase; The replicase polyproteins of the Nidoviruses such as, porcine arterivirus PRRSV, equine arterivirus EAV, human coronavirus 229E, and severe acute respiratory syndrome coronavirus (SARS-CoV), are predicted to be cleaved into 14 non-structural proteins (nsps) by the nsp4 main proteinase pfam05579 and three accessory proteinases residing in nsp1-alpha, nsp1-beta and nsp2. This family is the two nsp1 proteins that together act in a papain-like way to separate off the rest of the various functional domains of the polyprotein. Once inside the host cell, this nsp1 interferes with the regulation of interferon, thereby enabling the virus to replicate.
Pssm-ID: 291424 Cd Length: 249 Bit Score: 520.77 E-value: 1.29e-172
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 1 MATFSATGFGGSFVRDWSLDLPATCEHGAGLCCEVDGSTLCAECFLGCEGVEQCPGLFMGLLKLASPVPVGHKFLIGWYR 80
Cdd:pfam14754 1 MATFSATGFGGSFVRDWSLDLPDACEHGAGLCCEVDGSTLCAECFRGCEGMEQCPGLFMGLLKLASPVPVGHKFLIGWYR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 81 AAKVTGRYNFLELLQHPAFAQLRVVDARLAIEEASVFISTDHASAKRFPGARFALTPVYANPWVVSPTANSLVVTIDQEQ 160
Cdd:pfam14754 81 AAKVTGRYNFLELLQHPAFAQLRVVDARLAIEEASVFISTDHASAKRFPGARFALTPVYANAWVVSPAANSLIVTTDQEQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 161 DGFCWLKLLPPDRREAGLRLYYNHYREQRTGWLSKTGLRLWLGDLGLGVNSSSGVLKFHIMRSSPQRAWHITTRSCKLKS 240
Cdd:pfam14754 161 DGFCWLKLLPPDRREAGLRLYYNHYREQRTGWLSKTGLRLWLGDLGLGINASSGGLKFHIMRGSPQRAWHITTRSCKLKS 240
|
....*....
gi 1808512276 241 YYVCDISEA 249
Cdd:pfam14754 241 YYVCDISEA 249
|
|
| Peptidase_S32 |
pfam05579 |
Equine arteritis virus serine endopeptidase S32; Serine peptidases involved in processing ... |
963-1269 |
1.33e-133 |
|
Equine arteritis virus serine endopeptidase S32; Serine peptidases involved in processing nidovirus polyprotein.
Pssm-ID: 253263 Cd Length: 297 Bit Score: 417.26 E-value: 1.33e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 963 LATLFVNLFfpqatLVTMGYWACVAALAVYSLMGLRVK-VNVPMCVTPAHFLLLARTAGQSReqmlrVSAAAPANSLLGV 1041
Cdd:pfam05579 1 LTMLWVQFF-----LVFVNFWAGVAALVVLISLWLLARyTNVAGLVTPYDIHLVTSSPRGAA-----ALATAPEGTYLAA 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 1042 ARDCYVTGTTRLYIPKEGGMVFEGLFRSPKARGNVGFVAGSSYGTGSVWTRNNEVVVLTASHVVGrANMATLKIGDTMLT 1121
Cdd:pfam05579 71 VRRAALTGRTCLFVPSNFGSVLEGLFRTRKPALNVVSVFGSSSGSGGVFTINGNVVVVTASHVLG-GNKARVSGVGFNQM 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 1122 LT*KKNG***EAVTtqSELPGNWPQLNYAQPTTGPASWCTATGDEEGLLSGEVCLAWTTSGDSGSAVVQGDA-VVGVHTG 1200
Cdd:pfam05579 150 LTFKTNGDYAFAVV--AEWPGAAPKLKFAQGYTGRAYWSTSTGVEPGLLGKGFAFCFTKCGDSGSPVITEDGnLVGVHTG 227
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 1201 SNTSGVAYVTTPSGKLLGADTVTLSSLSKHFTGPLSPIPK-DIPDNIIADVDAVPRSLAMLIDGLSNRES 1269
Cdd:pfam05579 228 SNKRGSGMVTTPSGKTLGMAPVKLSELSKHFAGPGVPVPTvKLPKNIIVDVEAVPSDLAALLESLPNLEG 297
|
|
| Nsp2_AV |
pfam14755 |
Nsp2, transmembrane domain; This domain is found in Nsp2 protein of the RNA-arteriviruses, ... |
361-508 |
5.25e-97 |
|
Nsp2, transmembrane domain; This domain is found in Nsp2 protein of the RNA-arteriviruses, such as porcine arterivirus PRRSV and equine arterivirus EAV, which is a tetraspanning transmembrane protein. This domain resides adjacent to the peptidase C33 catalytic domain of Nsp2.
Pssm-ID: 373271 [Multi-domain] Cd Length: 148 Bit Score: 308.45 E-value: 5.25e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 361 GPPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPAPRTRPSASPPEEVKDTVTVPPVPKPRTKLAKPSPAQAPTPAP 440
Cdd:pfam14755 1 GPPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPAPRTRPSASSSGDVKDPATVPPVPKPRTKLAKPSPTQAPTPAP 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1808512276 441 RTRLQDAAKQEPPAGTTAASASVPRWRVAKTVYSTAERIRTGLIHRAQSVGDSLVQALPLKTPAVQRY 508
Cdd:pfam14755 81 RTRLQDASKQEPPVGTAAAPASAPKWRVAKTVYSSAERIRTELVQRARSIGDVLVQALPLKTPAVQRY 148
|
|
| Arteri_nsp7a |
pfam16749 |
Arterivirus nonstructural protein 7 alpha; Nonstructural protein 7 alpha is likely to have a ... |
1454-1573 |
2.39e-45 |
|
Arterivirus nonstructural protein 7 alpha; Nonstructural protein 7 alpha is likely to have a role in viral RNA synthesis.
Pssm-ID: 374774 Cd Length: 128 Bit Score: 159.88 E-value: 2.39e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 1454 LTATLA-ALTDDDFQFLSDVLDCRAVRSAMNLRAALTSFQVAQYRNILNASLQVDRDAARSRRLMAKLADFA--VEQEVT 1530
Cdd:pfam16749 1 LTAALAcALSDDDLDFLSQLVDCKAFVSASNMRNALGDFIESAYAKALRASLASVVAVAKSRRALAKLEDFAdtVSPQLS 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1808512276 1531 AGDRVVVIdGLDHMAHFK------GDLVLVPLTTKVVGGSRCTICDVVK 1573
Cdd:pfam16749 81 PGDPVVLL-GKTPVGEIFdiyvgdTKHVLRPIETRVVAGSKCTICTVVV 128
|
|
| av_Nsp3_ER-remodelling |
cd22528 |
intracellular membrane remodeller motif of arterivirus non-structural protein 3 (Nsp3); This ... |
846-902 |
2.01e-22 |
|
intracellular membrane remodeller motif of arterivirus non-structural protein 3 (Nsp3); This domain is present in subunit Nsp3 of RNA-arteriviruses, such as porcine arterivirus PRRSV and equine arterivirus EAV. Nsp3 proteins are localized to the ER and appear to be essential for formation of double-membrane vesicles that originate from the ER during the life-cycle of the virus. Arterivirus Nsp3 is a predicted tetra-spanning transmembrane protein containing four transmembrane helices, with the N- and C-termini of the protein residing in the cytoplasm. It contains a cluster of four highly conserved cysteine residues that are predicted to reside in the first luminal domain of the protein. These conserved cysteines play a key role in the formation of double-membrane vesicles (DMVs); mutagenesis of each completely blocked DMV formation.
Pssm-ID: 412095 Cd Length: 57 Bit Score: 92.00 E-value: 2.01e-22
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1808512276 846 STFTCLPIKCGIGTRDPFCRRVFSVPVTKTQEHCHAGMCASAEGISLDTLGLTQLQS 902
Cdd:cd22528 1 GLYLQSPVSCGIGTNDPFCRNPFGVPVVGTQGVCHSGYCASAQGISLPTSLLTQLSS 57
|
|
| Peptidase_C33 |
pfam05412 |
Equine arterivirus Nsp2-type cysteine proteinase; Corresponds to Merops family C33. These ... |
261-357 |
3.74e-14 |
|
Equine arterivirus Nsp2-type cysteine proteinase; Corresponds to Merops family C33. These peptidases are involved in viral polyprotein processing in replication.
Pssm-ID: 114153 Cd Length: 108 Bit Score: 70.33 E-value: 3.74e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 261 GYNPPGDGACGYRCLAFMNGATAVSAGCS--------SDLWCDDELAYRVFQLSpTFTVTIPGGRVCPNARYVMICDKQH 332
Cdd:pfam05412 1 GYSPPGDGACGWHCISAIANRMFNDKFTTtltecsrpSDDWASDQDLVQAIQTL-RLPATLDRNGACPSAKYKLKLVGQH 79
|
90 100
....*....|....*....|....*.
gi 1808512276 333 WRVKRAKGVGL-CLDENCFRGTCDCQ 357
Cdd:pfam05412 80 WTVTVRKGMAPgLLSPECVRGVCGHE 105
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
358-464 |
2.01e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 49.60 E-value: 2.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 358 RRSGPPPAPVSASvldhilEAATFGNVRVVATEEQQRPVPAPRTRPSASPPEEVKDTVTVPPVPKPRTKLAKPSPAQAPT 437
Cdd:PRK07764 400 SAAAAAPAAAPAP------AAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAA 473
|
90 100
....*....|....*....|....*..
gi 1808512276 438 PAPRTRLQDAAKQEPPAGTTAASASVP 464
Cdd:PRK07764 474 PEPTAAPAPAPPAAPAPAAAPAAPAAP 500
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
358-541 |
3.35e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 49.17 E-value: 3.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 358 RRSGPPPAPVSASVldhileAATFGNVRVVAteeqqRPVPAPRTRPSASPPEEVKDTVTVPPVPKPRTKLAKPSPAQaPT 437
Cdd:PHA03247 2863 RRRPPSRSPAAKPA------APARPPVRRLA-----RPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQ-PQ 2930
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 438 PAPRTRLQDAAKQEP---PAGTTAASASVPRWRVAKTVYSTAERIRTglihRAQSVGDSLVQALPLKTPAVQRYTMTLKM 514
Cdd:PHA03247 2931 PPPPPPPRPQPPLAPttdPAGAGEPSGAVPQPWLGALVPGRVAVPRF----RVPQPAPSREAPASSTPPLTGHSLSRVSS 3006
|
170 180
....*....|....*....|....*..
gi 1808512276 515 MRSRFSWHCDTWYPLAAIacLLPIWPS 541
Cdd:PHA03247 3007 WASSLALHEETDPPPVSL--KQTLWPP 3031
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
358-506 |
3.99e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 48.33 E-value: 3.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 358 RRSGPPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPAPRTRPSASPPEEVKDTVTVPPVPKPRTKLAKPSPAQ-AP 436
Cdd:PRK12323 446 GAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVaES 525
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1808512276 437 TPAPRTRLQDAAKQEPPAGTTAASASVPRWRVAKTVYSTAERI-RTGLIHRAQSVGDSLVQALPLKTPAVQ 506
Cdd:PRK12323 526 IPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRAsASGLPDMFDGDWPALAARLPVRGLAQQ 596
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
362-466 |
5.10e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 48.33 E-value: 5.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 362 PPPAPVSASVLDHILEAATfgnvrvvATEEQQRPVPAPRTRPSASPPEEVKDTVTVPPVPKPrtklAKPSPAQAPTPAPR 441
Cdd:PRK12323 406 PAAAPAAAAAARAVAAAPA-------RRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAA----AARPAAAGPRPVAA 474
|
90 100
....*....|....*....|....*
gi 1808512276 442 TRLQDAAKQEPPAGTTAASASVPRW 466
Cdd:PRK12323 475 AAAAAPARAAPAAAPAPADDDPPPW 499
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
388-459 |
2.04e-04 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 44.61 E-value: 2.04e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1808512276 388 ATEEQQRPVPAPRTRPSASPPEEVKDTVTVPPVPKPRTKLA-KPSPAQAPTPAPRTRLQDAAKQEPPAGTTAA 459
Cdd:PRK11633 72 AEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVeKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAA 144
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
391-469 |
4.80e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 45.09 E-value: 4.80e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1808512276 391 EQQRPVPAPRTRPSASPPEEvkdtVTVPPVPKPRTKLAKPSPAQAPTPAPRTRLQDAAKQEPPAGTTAASASVPRWRVA 469
Cdd:PRK14951 377 EKKTPARPEAAAPAAAPVAQ----AAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAP 451
|
|
| PRK10819 |
PRK10819 |
transport protein TonB; Provisional |
384-476 |
5.48e-04 |
|
transport protein TonB; Provisional
Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 43.52 E-value: 5.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 384 VRVVATEEQQRPVPA-PRTRPSASP---PEEVKDTVTVPPVPKPRTKlAKPSPAQAPTPAPRTRLQDAAKQEPPAGTTAA 459
Cdd:PRK10819 50 VTMVAPADLEPPQAVqPPPEPVVEPepePEPIPEPPKEAPVVIPKPE-PKPKPKPKPKPKPVKKVEEQPKREVKPVEPRP 128
|
90
....*....|....*..
gi 1808512276 460 SASVPRWRVAKTVYSTA 476
Cdd:PRK10819 129 ASPFENTAPARPTSSTA 145
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
362-467 |
6.07e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 44.35 E-value: 6.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 362 PPPAPVSASV--LDHILEAATFGnvrVVATEEQQRPVPAPRTRPSASPPeevkdtvtVPPVPKPRTKLAKPSPAQAPTPA 439
Cdd:PRK14965 362 APGAPVSELLdrLEALERGAPAP---PSAAWGAPTPAAPAAPPPAAAPP--------VPPAAPARPAAARPAPAPAPPAA 430
|
90 100
....*....|....*....|....*...
gi 1808512276 440 PrtrlqdaAKQEPPAGTTAASASVPRWR 467
Cdd:PRK14965 431 A-------APPARSADPAAAASAGDRWR 451
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
370-506 |
8.40e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 44.03 E-value: 8.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 370 SVLDHILEAATFGN----VRVVATEEQQRPVPAP--RTRPSASPPEEVKDTVTVPPVPKPRT---KLAKPSPAQAPTPAP 440
Cdd:PRK14950 335 SQLDFQLRTTSYGQlpleLAVIEALLVPVPAPQPakPTAAAPSPVRPTPAPSTRPKAAAAANippKEPVRETATPPPVPP 414
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1808512276 441 RTRLQDAAKQEPPAGTTAASAS-VPRWRVAKTVYSTAERIRTG-----LIHRAQSVGDSLVQALPLKTPAVQ 506
Cdd:PRK14950 415 RPVAPPVPHTPESAPKLTRAAIpVDEKPKYTPPAPPKEEEKALiadgdVLEQLEAIWKQILRDVPPRSPAVQ 486
|
|
| PHA03269 |
PHA03269 |
envelope glycoprotein C; Provisional |
389-477 |
1.01e-03 |
|
envelope glycoprotein C; Provisional
Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 43.95 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 389 TEEQQRPVPAPRTRPSASP--------PEEVKDTVTVPPVPKPRTKLAKPSPAQAPT--------PAPRTRLQDAAKQEP 452
Cdd:PHA03269 19 IANLNTNIPIPELHTSAATqkpdpapaPHQAASRAPDPAVAPTSAASRKPDLAQAPTpaasekfdPAPAPHQAASRAPDP 98
|
90 100
....*....|....*....|....*
gi 1808512276 453 PAGTTAASASVPRWRVAKTVYSTAE 477
Cdd:PHA03269 99 AVAPQLAAAPKPDAAEAFTSAAQAH 123
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
357-466 |
1.36e-03 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 42.83 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 357 QRRSGPPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPAPRTRPSASPPEEVKD--TVTVPPVPKPRTKLAKPSPA- 433
Cdd:NF040712 220 APAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAAEPDEATRDagEPPAPGAAETPEAAEPPAPAp 299
|
90 100 110
....*....|....*....|....*....|....*..
gi 1808512276 434 QAPTPAPRTRLQDAAKQEPPAGTTAAS----ASVPRW 466
Cdd:NF040712 300 AAPAAPAAPEAEEPARPEPPPAPKPKRrrrrASVPSW 336
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
359-440 |
1.77e-03 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 41.91 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 359 RSGPPPAPvsasvldHILEAATFGNVRVVATEEQQRPVPAPRTRPSASPPEEVKDTVTVPPVPKPRTKlakpsPAQAPTP 438
Cdd:PRK11633 76 RAGDAAAP-------SLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPK-----PVVEEKA 143
|
..
gi 1808512276 439 AP 440
Cdd:PRK11633 144 AP 145
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
360-447 |
1.84e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 43.16 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 360 SGPPPAPVSASVLDHILEAATFGnvrvvateeqQRPVPAPRTRPSASPPEEVKDTVTVPPVPKPRTKLAKPSPAQAPTPA 439
Cdd:PRK14951 419 AAAPPAPVAAPAAAAPAAAPAAA----------PAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488
|
....*...
gi 1808512276 440 PRTRLQDA 447
Cdd:PRK14951 489 TPTEEGDV 496
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
361-463 |
2.15e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 42.87 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 361 GPPPAPVSASVLDHILEAATFgNVRVVATEEQQRPVPAPRTRPSASPPEEVKDTVTVPPVPKPRTKLAKPSPAQAPTPAP 440
Cdd:PRK14950 369 AKPTAAAPSPVRPTPAPSTRP-KAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPP 447
|
90 100
....*....|....*....|...
gi 1808512276 441 rtrlqdaakQEPPAGTTAASASV 463
Cdd:PRK14950 448 ---------APPKEEEKALIADG 461
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
362-477 |
7.30e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 41.00 E-value: 7.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 362 PPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPAPRTRPSASPPEEVKDTVTVPPVPkPRTKLAKPSPAQAPTPAPR 441
Cdd:PRK07994 374 SAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQ-GATKAKKSEPAAASRARPV 452
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1808512276 442 TRLQDAAKQEPPAGTTAASASVP----RWRVAKTVYSTAE 477
Cdd:PRK07994 453 NSALERLASVRPAPSALEKAPAKkeayRWKATNPVEVKKE 492
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
361-465 |
7.81e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 41.31 E-value: 7.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 361 GPPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPA--PRTRPSASPPEEVKDTVTVPPVPKPRTKLAKPSPAQAPTP 438
Cdd:PHA03307 127 PPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASdaASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRP 206
|
90 100
....*....|....*....|....*..
gi 1808512276 439 APRTRLqDAAKQEPPAGTTAASASVPR 465
Cdd:PHA03307 207 PRRSSP-ISASASSPAPAPGRSAADDA 232
|
|
| DUF6264 |
pfam19779 |
Family of unknown function (DUF6264); This family of putative integral membrane proteins is ... |
388-469 |
9.25e-03 |
|
Family of unknown function (DUF6264); This family of putative integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 179 and 218 amino acids in length.
Pssm-ID: 466182 Cd Length: 182 Bit Score: 39.17 E-value: 9.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1808512276 388 ATEEQQRPVPAPRTRPSASPPEEvkdtvtvPPVPKPrtklakPSPAQAPTPAPRTRlqdAAKQEPPAGTTAASASVPRW- 466
Cdd:pfam19779 8 APPGWQRAPIGDPAAAAAAAPPA-------APAPAA------PAPPAAPAAPPAAP---PPPGAPAPGAPAAARRARRWd 71
|
...
gi 1808512276 467 RVA 469
Cdd:pfam19779 72 RIA 74
|
|
| |
