NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1807852215|gb|QHY93014|]
View 

dehydroascorbate reductase, partial [Solanum chilense]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
PLN02817 super family cl31548
glutathione dehydrogenase (ascorbate)
3-210 4.19e-112

glutathione dehydrogenase (ascorbate)


The actual alignment was detected with superfamily member PLN02817:

Pssm-ID: 166458 [Multi-domain]  Cd Length: 265  Bit Score: 321.17  E-value: 4.19e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215   3 VEVCVKAAVGAPDVLGDCPFSQRVLLTLEEKKVTYKKHLINVSDKPKWFLEVNPEGKVPVINFGDKWIPDSDVIVGILEE 82
Cdd:PLN02817   56 LEVCVKASLTVPNKLGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEE 135
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215  83 KYPNPSLIAPPEFASVGSKIFPTFVSFLKSKDSSDSTEQALLDELKALEEHLKAHGPCINGQNVCSVDMSLAPKLYHLKV 162
Cdd:PLN02817  136 KYPDPPLATPPEKASVGSKIFSTFIGFLKSKDPGDGTEQALLDELTSFDDYIKENGPFINGEKISAADLSLGPKLYHLEI 215
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1807852215 163 ALGHFKKWSVPESLSLVRNYMKLLFERESFHKTKAEEKYVIAGWAPKV 210
Cdd:PLN02817  216 ALGHYKNWSVPDSLPFVKSYMKNIFSMESFVKTRALPEDVIAGWRPKV 263
 
Name Accession Description Interval E-value
PLN02817 PLN02817
glutathione dehydrogenase (ascorbate)
3-210 4.19e-112

glutathione dehydrogenase (ascorbate)


Pssm-ID: 166458 [Multi-domain]  Cd Length: 265  Bit Score: 321.17  E-value: 4.19e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215   3 VEVCVKAAVGAPDVLGDCPFSQRVLLTLEEKKVTYKKHLINVSDKPKWFLEVNPEGKVPVINFGDKWIPDSDVIVGILEE 82
Cdd:PLN02817   56 LEVCVKASLTVPNKLGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEE 135
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215  83 KYPNPSLIAPPEFASVGSKIFPTFVSFLKSKDSSDSTEQALLDELKALEEHLKAHGPCINGQNVCSVDMSLAPKLYHLKV 162
Cdd:PLN02817  136 KYPDPPLATPPEKASVGSKIFSTFIGFLKSKDPGDGTEQALLDELTSFDDYIKENGPFINGEKISAADLSLGPKLYHLEI 215
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1807852215 163 ALGHFKKWSVPESLSLVRNYMKLLFERESFHKTKAEEKYVIAGWAPKV 210
Cdd:PLN02817  216 ALGHYKNWSVPDSLPFVKSYMKNIFSMESFVKTRALPEDVIAGWRPKV 263
GST_C_DHAR cd03201
C-terminal, alpha helical domain of Dehydroascorbate Reductase; Glutathione S-transferase (GST) ...
89-209 2.45e-70

C-terminal, alpha helical domain of Dehydroascorbate Reductase; Glutathione S-transferase (GST) C-terminal domain family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, which are monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.


Pssm-ID: 198310  Cd Length: 121  Bit Score: 209.97  E-value: 2.45e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215  89 LIAPPEFASVGSKIFPTFVSFLKSKDSSDSTEQALLDELKALEEHLKAHGPCINGQNVCSVDMSLAPKLYHLKVALGHFK 168
Cdd:cd03201     1 LKTPPEFASVGSKIFSTFVTFLKSKDANDGSEQALLDELTALDEHLKTNGPFIAGEKITAVDLSLAPKLYHLRVALGHYK 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1807852215 169 KWSVPESLSLVRNYMKLLFERESFHKTKAEEKYVIAGWAPK 209
Cdd:cd03201    81 GWSVPESLTAVHKYMELLFSRESFKKTKAPDEMIIAGWAPK 121
GstA COG0625
Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];
20-204 2.62e-21

Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440390 [Multi-domain]  Cd Length: 205  Bit Score: 87.26  E-value: 2.62e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215  20 CPFSQRVLLTLEEKKVTYKKHLINVSD---KPKWFLEVNPEGKVPVINFGDKWIPDSDVIVGILEEKYPNPSLI--APPE 94
Cdd:COG0625    10 SPNSRRVRIALEEKGLPYELVPVDLAKgeqKSPEFLALNPLGKVPVLVDDGLVLTESLAILEYLAERYPEPPLLpaDPAA 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215  95 FASV-------GSKIFPTFVSFL------KSKDSSDSTEQALLDELKALEEHLkAHGPCINGQNVCSVDMSLAPKLY--- 158
Cdd:COG0625    90 RARVrqwlawaDGDLHPALRNLLerlapeKDPAAIARARAELARLLAVLEARL-AGGPYLAGDRFSIADIALAPVLRrld 168
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1807852215 159 HLKVALGHFKKwsvpeslslVRNYMKLLFERESFHKTKAEEKYVIA 204
Cdd:COG0625   169 RLGLDLADYPN---------LAAWLARLAARPAFQRALAAAEPDLA 205
O-ClC TIGR00862
intracellular chloride channel protein; The Organellar Chloride Channel (O-ClC) Family (TC 1.A. ...
3-202 2.47e-18

intracellular chloride channel protein; The Organellar Chloride Channel (O-ClC) Family (TC 1.A.12) Proteins of the O-ClC family are voltage-sensitive chloride channels found in intracellular membranes but not the plasma membranes of animal cells. They are found in human nuclear membranes, and the bovine protein targets to the microsomes, but not the plasma membrane, when expressed in Xenopus laevis oocytes. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney. [Transport and binding proteins, Anions]


Pssm-ID: 129941 [Multi-domain]  Cd Length: 236  Bit Score: 79.90  E-value: 2.47e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215   3 VEVCVKAAVGAPDVlGDCPFSQRVLLTLEEKKVTYKKHLINVSDKPKWFLEVNPEGKVPVINFGDKWIPDSDVIVGILEE 82
Cdd:TIGR00862   3 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEE 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215  83 -----KYPNpslIAP--PEFASVGSKIFPTFVSFLKS--KDSSDSTEQALLDELKALEEHLKAHGP-------------- 139
Cdd:TIGR00862  82 tlcppRYPK---LSPkhPESNTAGLDIFAKFSAYIKNsnPEANDNLEKGLLKALKKLDDYLNSPLPeeidedsaedekvs 158
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1807852215 140 ---CINGQNVCSVDMSLAPKLYHLKVALGHFKKWSVPESLSLVRNYMKLLFERESFHKTKAEEKYV 202
Cdd:TIGR00862 159 rrkFLDGDELTLADCNLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNAYAREEFTNTCPDDKEI 224
GST_N_3 pfam13417
Glutathione S-transferase, N-terminal domain;
19-88 2.05e-15

Glutathione S-transferase, N-terminal domain;


Pssm-ID: 433190 [Multi-domain]  Cd Length: 75  Bit Score: 68.02  E-value: 2.05e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215  19 DCPFSQRVLLTLEEKKVTYKKHLINVSDKPKWFLEVNPEGKVPVINFGDKWIPDSDVIVGILEEKYPNPS 88
Cdd:pfam13417   6 GSPYARRVRIALNEKGLPYEFVPIPPGDHPPELLAKNPLGKVPVLEDDGGILCESLAIIDYLEELYPGPP 75
 
Name Accession Description Interval E-value
PLN02817 PLN02817
glutathione dehydrogenase (ascorbate)
3-210 4.19e-112

glutathione dehydrogenase (ascorbate)


Pssm-ID: 166458 [Multi-domain]  Cd Length: 265  Bit Score: 321.17  E-value: 4.19e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215   3 VEVCVKAAVGAPDVLGDCPFSQRVLLTLEEKKVTYKKHLINVSDKPKWFLEVNPEGKVPVINFGDKWIPDSDVIVGILEE 82
Cdd:PLN02817   56 LEVCVKASLTVPNKLGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEE 135
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215  83 KYPNPSLIAPPEFASVGSKIFPTFVSFLKSKDSSDSTEQALLDELKALEEHLKAHGPCINGQNVCSVDMSLAPKLYHLKV 162
Cdd:PLN02817  136 KYPDPPLATPPEKASVGSKIFSTFIGFLKSKDPGDGTEQALLDELTSFDDYIKENGPFINGEKISAADLSLGPKLYHLEI 215
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1807852215 163 ALGHFKKWSVPESLSLVRNYMKLLFERESFHKTKAEEKYVIAGWAPKV 210
Cdd:PLN02817  216 ALGHYKNWSVPDSLPFVKSYMKNIFSMESFVKTRALPEDVIAGWRPKV 263
PLN02378 PLN02378
glutathione S-transferase DHAR1
1-210 1.45e-108

glutathione S-transferase DHAR1


Pssm-ID: 166019 [Multi-domain]  Cd Length: 213  Bit Score: 310.10  E-value: 1.45e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215   1 MVVEVCVKAAVGAPDVLGDCPFSQRVLLTLEEKKVTYKKHLINVSDKPKWFLEVNPEGKVPVINFGDKWIPDSDVIVGIL 80
Cdd:PLN02378    1 MALEICVKAAVGAPDHLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGIL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215  81 EEKYPNPSLIAPPEFASVGSKIFPTFVSFLKSKDSSDSTEQALLDELKALEEHLKAH-GPCINGQNVCSVDMSLAPKLYH 159
Cdd:PLN02378   81 EEKYPDPPLKTPAEFASVGSNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHdGPFIAGERVSAVDLSLAPKLYH 160
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1807852215 160 LKVALGHFKKWSVPESLSLVRNYMKLLFERESFHKTKAEEKYVIAGWAPKV 210
Cdd:PLN02378  161 LQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKTEEKYVISGWAPKV 211
GST_C_DHAR cd03201
C-terminal, alpha helical domain of Dehydroascorbate Reductase; Glutathione S-transferase (GST) ...
89-209 2.45e-70

C-terminal, alpha helical domain of Dehydroascorbate Reductase; Glutathione S-transferase (GST) C-terminal domain family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, which are monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.


Pssm-ID: 198310  Cd Length: 121  Bit Score: 209.97  E-value: 2.45e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215  89 LIAPPEFASVGSKIFPTFVSFLKSKDSSDSTEQALLDELKALEEHLKAHGPCINGQNVCSVDMSLAPKLYHLKVALGHFK 168
Cdd:cd03201     1 LKTPPEFASVGSKIFSTFVTFLKSKDANDGSEQALLDELTALDEHLKTNGPFIAGEKITAVDLSLAPKLYHLRVALGHYK 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1807852215 169 KWSVPESLSLVRNYMKLLFERESFHKTKAEEKYVIAGWAPK 209
Cdd:cd03201    81 GWSVPESLTAVHKYMELLFSRESFKKTKAPDEMIIAGWAPK 121
GST_C_CLIC cd03198
C-terminal, alpha helical domain of Chloride Intracellular Channels; Glutathione S-transferase ...
93-207 8.30e-24

C-terminal, alpha helical domain of Chloride Intracellular Channels; Glutathione S-transferase (GST) C-terminal domain family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLICs (CLIC1-6 in vertebrates), p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes, and they may play roles in the maintenance of these intracellular membranes. Biochemical studies of the Caenorhabditis elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. CLICs display structural plasticity, with CLIC1 adopting two soluble conformations. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLIC1 dimer bears no similarity to GST dimers. The redox-controlled structural rearrangement exposes a large hydrophobic surface, which is masked by dimerization in vitro. In vivo, this surface may represent the docking interface of CLIC1 in its membrane-bound state. The two cysteines in CLIC1 that form the disulfide bond in oxidizing conditions are essential for dimerization and chloride channel activity, however, in other subfamily members, the second cysteine is not conserved.


Pssm-ID: 198307  Cd Length: 119  Bit Score: 91.13  E-value: 8.30e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215  93 PEFASVGSKIFPTFVSFLKSKDSS--DSTEQALLDELKALEEHLKAH-GPCINGQNVCSVDMSLAPKLYHLKVALGHFKK 169
Cdd:cd03198     2 PEANTAGEDLFAKFSAYIKNKDPAadEALRKALLKELSKLDAYLSSSsRKFLDGDTLTLADCNLLPKLHHIRVAGKAYKD 81
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1807852215 170 WSVPESLSLVRNYMKLLFERESFHKTKAEEKYVIAGWA 207
Cdd:cd03198    82 FDIPDDFTGLWRYLKNAYETDEFTKTCPADQEIILHYK 119
GstA COG0625
Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];
20-204 2.62e-21

Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440390 [Multi-domain]  Cd Length: 205  Bit Score: 87.26  E-value: 2.62e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215  20 CPFSQRVLLTLEEKKVTYKKHLINVSD---KPKWFLEVNPEGKVPVINFGDKWIPDSDVIVGILEEKYPNPSLI--APPE 94
Cdd:COG0625    10 SPNSRRVRIALEEKGLPYELVPVDLAKgeqKSPEFLALNPLGKVPVLVDDGLVLTESLAILEYLAERYPEPPLLpaDPAA 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215  95 FASV-------GSKIFPTFVSFL------KSKDSSDSTEQALLDELKALEEHLkAHGPCINGQNVCSVDMSLAPKLY--- 158
Cdd:COG0625    90 RARVrqwlawaDGDLHPALRNLLerlapeKDPAAIARARAELARLLAVLEARL-AGGPYLAGDRFSIADIALAPVLRrld 168
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1807852215 159 HLKVALGHFKKwsvpeslslVRNYMKLLFERESFHKTKAEEKYVIA 204
Cdd:COG0625   169 RLGLDLADYPN---------LAAWLARLAARPAFQRALAAAEPDLA 205
O-ClC TIGR00862
intracellular chloride channel protein; The Organellar Chloride Channel (O-ClC) Family (TC 1.A. ...
3-202 2.47e-18

intracellular chloride channel protein; The Organellar Chloride Channel (O-ClC) Family (TC 1.A.12) Proteins of the O-ClC family are voltage-sensitive chloride channels found in intracellular membranes but not the plasma membranes of animal cells. They are found in human nuclear membranes, and the bovine protein targets to the microsomes, but not the plasma membrane, when expressed in Xenopus laevis oocytes. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney. [Transport and binding proteins, Anions]


Pssm-ID: 129941 [Multi-domain]  Cd Length: 236  Bit Score: 79.90  E-value: 2.47e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215   3 VEVCVKAAVGAPDVlGDCPFSQRVLLTLEEKKVTYKKHLINVSDKPKWFLEVNPEGKVPVINFGDKWIPDSDVIVGILEE 82
Cdd:TIGR00862   3 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEE 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215  83 -----KYPNpslIAP--PEFASVGSKIFPTFVSFLKS--KDSSDSTEQALLDELKALEEHLKAHGP-------------- 139
Cdd:TIGR00862  82 tlcppRYPK---LSPkhPESNTAGLDIFAKFSAYIKNsnPEANDNLEKGLLKALKKLDDYLNSPLPeeidedsaedekvs 158
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1807852215 140 ---CINGQNVCSVDMSLAPKLYHLKVALGHFKKWSVPESLSLVRNYMKLLFERESFHKTKAEEKYV 202
Cdd:TIGR00862 159 rrkFLDGDELTLADCNLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNAYAREEFTNTCPDDKEI 224
GST_N_3 pfam13417
Glutathione S-transferase, N-terminal domain;
19-88 2.05e-15

Glutathione S-transferase, N-terminal domain;


Pssm-ID: 433190 [Multi-domain]  Cd Length: 75  Bit Score: 68.02  E-value: 2.05e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215  19 DCPFSQRVLLTLEEKKVTYKKHLINVSDKPKWFLEVNPEGKVPVINFGDKWIPDSDVIVGILEEKYPNPS 88
Cdd:pfam13417   6 GSPYARRVRIALNEKGLPYEFVPIPPGDHPPELLAKNPLGKVPVLEDDGGILCESLAIIDYLEELYPGPP 75
GST_N_family cd00570
Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic ...
20-77 2.00e-14

Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Based on sequence similarity, different classes of GSTs have been identified, which display varying tissue distribution, substrate specificities and additional specific activities. In humans, GSTs display polymorphisms which may influence individual susceptibility to diseases such as cancer, arthritis, allergy and sclerosis. Some GST family members with non-GST functions include glutaredoxin 2, the CLIC subfamily of anion channels, prion protein Ure2p, crystallins, metaxin 2 and stringent starvation protein A.


Pssm-ID: 238319 [Multi-domain]  Cd Length: 71  Bit Score: 65.29  E-value: 2.00e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1807852215  20 CPFSQRVLLTLEEKKVTYKKHLINVSDKP-KWFLEVNPEGKVPVINFGDKWIPDSDVIV 77
Cdd:cd00570     9 SPRSLRVRLALEEKGLPYELVPVDLGEGEqEEFLALNPLGKVPVLEDGGLVLTESLAIL 67
GST_N_2 pfam13409
Glutathione S-transferase, N-terminal domain; This family is closely related to pfam02798.
20-83 3.36e-14

Glutathione S-transferase, N-terminal domain; This family is closely related to pfam02798.


Pssm-ID: 433184 [Multi-domain]  Cd Length: 68  Bit Score: 64.57  E-value: 3.36e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1807852215  20 CPFSQRVLLTLEEKKVTYKKHLINVS--DKPKWFLEVNPEGKVPVINFGD-KWIPDSDVIVGILEEK 83
Cdd:pfam13409   2 SPFSHRVRLALEEKGLPYEIELVDLDpkDKPPELLALNPLGTVPVLVLPDgTVLTDSLVILEYLEEL 68
GST_N_Omega cd03055
GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular ...
20-77 1.07e-10

GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega GST genes may be associated with the development of some types of cancer and the age-at-onset of both Alzheimer's and Parkinson's diseases.


Pssm-ID: 239353 [Multi-domain]  Cd Length: 89  Bit Score: 56.21  E-value: 1.07e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1807852215  20 CPFSQRVLLTLEEKKVTYKKHLINVSDKPKWFLEVNPEGKVPVI-NFGDKWIPDSDVIV 77
Cdd:cd03055    27 CPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALeIDEGKVVYESLIIC 85
GST_C_CLIC1 cd10300
C-terminal, alpha helical domain of Chloride Intracellular Channel 1; Glutathione ...
93-202 1.53e-09

C-terminal, alpha helical domain of Chloride Intracellular Channel 1; Glutathione S-transferase (GST) C-terminal domain family, Chloride Intracellular Channel (CLIC) 1 subfamily; CLICs are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes, and they may play roles in the maintenance of these intracellular membranes. The membrane localization domain is present in the N-terminal part of the protein. Soluble CLIC1 is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLIC1 dimer bears no similarity to GST dimers. The redox-controlled structural rearrangement exposes a large hydrophobic surface, which is masked by dimerization in vitro. In vivo, this surface may represent the docking interface of CLIC1 in its membrane-bound state. The two cysteines in CLIC1 that form the disulfide bond in oxidizing conditions are essential for dimerization and chloride channel activity. CLIC1 is widely expressed in many tissues and its subcellular localization is dependent on cell type and cell cycle phase. It acts as a sensor of cell oxidation and appears to have a role in diseases that involve oxidative stress including tumorigenic and neurodegenerative diseases.


Pssm-ID: 198333  Cd Length: 139  Bit Score: 54.18  E-value: 1.53e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215  93 PEFASVGSKIFPTFVSFLKSKDSS--DSTEQALLDELKALEEHLKAHGP-----------------CINGQNVCSVDMSL 153
Cdd:cd10300     2 PESNTAGLDVFAKFSAYIKNSNPAlnDNLEKGLLKALKVLDNYLTSPLPeevdensaedegvsqrkFLDGNELTLADCNL 81
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1807852215 154 APKLYHLKVALGHFKKWSVPESLSLVRNYMKLLFERESFHKT--KAEEKYV 202
Cdd:cd10300    82 LPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFASTcpDDEEIEL 132
GST_C_CLIC4 cd10296
C-terminal, alpha helical domain of Chloride Intracellular Channel 4; Glutathione ...
93-207 1.67e-09

C-terminal, alpha helical domain of Chloride Intracellular Channel 4; Glutathione S-transferase (GST) C-terminal domain family, Chloride Intracellular Channel (CLIC) 4 subfamily; CLICs are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes, and they may play roles in the maintenance of these intracellular membranes. The membrane localization domain is present in the N-terminal part of the protein. Structures of soluble CLICs reveal that they adopt a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. CLIC4, also known as p64H1, is expressed ubiquitously and its localization varies depending on the nature of the cells and tissues, from the plasma membrane to subcellular compartments including the nucleus, mitochondria, ER, and the trans-Golgi network, among others. In response to cellular stress such as DNA damage and senescence, cytoplasmic CLIC4 translocates to the nucleus, where it acts on the TGF-beta pathway. Studies on knockout mice suggest that CLIC4 also plays an important role in angiogenesis, specifically in network formation, capillary sprouting, and lumen formation. CLIC4 has been found to induce apoptosis in several cell types and to retard the growth of grafted tumors in vivo.


Pssm-ID: 198329  Cd Length: 141  Bit Score: 54.26  E-value: 1.67e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215  93 PEFASVGSKIFPTFVSFLKSK--DSSDSTEQALLDELKALEEHLKAHGP-----------------CINGQNVCSVDMSL 153
Cdd:cd10296     2 PESNTAGMDIFAKFSAYIKNSrpEANEALERGLLKTLQKLDEYLNSPLPdeidensmedikfstrkFLDGNEMTLADCNL 81
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1807852215 154 APKLYHLKVALGHFKKWSVPESLSLVRNYMKLLFERESFHKTKAEEKYVIAGWA 207
Cdd:cd10296    82 LPKLHIVKVVAKKYRNFEIPKEMTGIWRYLSNAYSRDEFTNTCPSDKEIEIAYS 135
sspA PRK09481
stringent starvation protein A; Provisional
19-198 2.34e-08

stringent starvation protein A; Provisional


Pssm-ID: 236537 [Multi-domain]  Cd Length: 211  Bit Score: 52.02  E-value: 2.34e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215  19 DCPFSQRVLLTLEEKKVTYKKHLINVSDKPKWFLEVNPEGKVPVINFGDKWIPDSDVIVGILEEKYPNPSLIaPPEFASV 98
Cdd:PRK09481   18 TDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHPPLM-PVYPVAR 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215  99 GS------KIFPTFVSFLKS--KDSSDSTEQAlldeLKALEEHLKAHGPCIN------GQNVCSVDMSLAPKLYHLKVaL 164
Cdd:PRK09481   97 GEsrlmmhRIEKDWYSLMNKivNGSASEADAA----RKQLREELLAIAPVFGekpyfmSEEFSLVDCYLAPLLWRLPV-L 171
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1807852215 165 G-HFKKWSVPEslslVRNYMKLLFERESFHK--TKAE 198
Cdd:PRK09481  172 GiELSGPGAKE----LKGYMTRVFERDSFLAslTEAE 204
GST_N_SspA cd03059
GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP) ...
19-84 3.02e-08

GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.


Pssm-ID: 239357 [Multi-domain]  Cd Length: 73  Bit Score: 48.86  E-value: 3.02e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1807852215  19 DCPFSQRVLLTLEEKKVTYKKHLINVSDKPKWFLEVNPEGKVPVINFGDKWIPDSDVIVGILEEKY 84
Cdd:cd03059     8 DDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73
GST_C_CLIC6 cd10301
C-terminal, alpha helical domain of Chloride Intracellular Channel 6; Glutathione ...
93-195 3.02e-08

C-terminal, alpha helical domain of Chloride Intracellular Channel 6; Glutathione S-transferase (GST) C-terminal domain family, Chloride Intracellular Channel (CLIC) 6 subfamily; CLICs are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes, and they may play roles in the maintenance of these intracellular membranes. The membrane localization domain is present in the N-terminal part of the protein. Structures of soluble CLICs reveal that they adopt a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. CLIC6 is expressed predominantly in the stomach, pituitary, and brain. It interacts with D2-like dopamine receptors directly and through scaffolding proteins. CLIC6 may be involved in the regulation of secretion, possibly through chloride ion transport regulation.


Pssm-ID: 198334  Cd Length: 140  Bit Score: 50.79  E-value: 3.02e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215  93 PEFASVGSKIFPTFVSFLKS--KDSSDSTEQALLDELKALEEHLKAHGP-----------------CINGQNVCSVDMSL 153
Cdd:cd10301     2 PESNSAGNDVFAKFSAFIKNprKDANENLEKNLLKALRKLDNYLNTPLPdeidaysteditvsdrkFLDGNELTLADCNL 81
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1807852215 154 APKLYHLKVALGHFKKWSVPESLSLVRNYMKLLFERESFHKT 195
Cdd:cd10301    82 LPKLHIIKVVAKKYRNFEFPTEMTGIWRYLNNAYARDEFTNT 123
GST_N_GTT1_like cd03046
GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly ...
23-85 1.19e-07

GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pombe GST-III is implicated in the detoxification of various metals.


Pssm-ID: 239344 [Multi-domain]  Cd Length: 76  Bit Score: 47.50  E-value: 1.19e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1807852215  23 SQRVLLTLEEKKVTYKKHLINVSD---KPKWFLEVNPEGKVPVINFGDKWIPDSDVIVGILEEKYP 85
Cdd:cd03046    11 SFRILWLLEELGLPYELVLYDRGPgeqAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76
GST_N_Ure2p_like cd03048
GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related ...
21-85 1.25e-07

GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and Schizosaccharomyces pombe GST-I. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes.


Pssm-ID: 239346 [Multi-domain]  Cd Length: 81  Bit Score: 47.54  E-value: 1.25e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1807852215  21 PFSQRVLLTLEEKKVTYKKHLINVSD---KPKWFLEVNPEGKVPVI---NFGDKWIPDSDVIVGILEEKYP 85
Cdd:cd03048    10 PNGFKVSIMLEELGLPYEIHPVDISKgeqKKPEFLKINPNGRIPAIvdhNGTPLTVFESGAILLYLAEKYD 80
GST_N_Phi cd03053
GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related ...
20-83 1.55e-07

GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including transport of flavonoid pigments to the vacuole, shoot regeneration and GSH peroxidase activity.


Pssm-ID: 239351 [Multi-domain]  Cd Length: 76  Bit Score: 47.26  E-value: 1.55e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1807852215  20 CPFSQRVLLTLEEKKVTYKkhLINVS-----DKPKWFLEVNPEGKVPVINFGDKWIPDSDVIVGILEEK 83
Cdd:cd03053    10 STCVRRVLLCLEEKGVDYE--LVPVDltkgeHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76
GST_C_CLIC5 cd10297
C-terminal, alpha helical domain of Chloride Intracellular Channel 5; Glutathione ...
94-207 1.71e-07

C-terminal, alpha helical domain of Chloride Intracellular Channel 5; Glutathione S-transferase (GST) C-terminal domain family, Chloride Intracellular Channel (CLIC) 5 subfamily; CLICs are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes, and they may play roles in the maintenance of these intracellular membranes. The membrane localization domain is present in the N-terminal part of the protein. Structures of soluble CLICs reveal that they adopt a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. CLIC5 exists in two alternatively-spliced isoforms, CLIC5A or CLIC5B (also called p64). It is expressed at high levels in hair cell stereocilia and is associated with the actin cytoskeleton and ezrin. A recessive mutation in the CLIC5 gene in mice led to the lack of coordination and deafness, due to a defect in the basal region of the hair bundle causing stereocilia to degrade. CLIC5 is therefore essential for normal inner ear function. CLIC5 is also highly expressed in podocytes where it is colocalized with the ezrin/radixin/moesin (ERM) complex. It is essential for foot process integrity, and for podocyte morphology and function.


Pssm-ID: 198330  Cd Length: 141  Bit Score: 48.81  E-value: 1.71e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215  94 EFASVGSKIFPTFVSFLKS--KDSSDSTEQALLDELKALEEHLKAHGP-----------------CINGQNVCSVDMSLA 154
Cdd:cd10297     3 ESNTAGIDIFSKFSAYIKNtkQQANAALEKGLTKALKKLDDYLNTPLPeeidadsteeekvsnrkFLDGDELTLADCNLL 82
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1807852215 155 PKLYHLKVALGHFKKWSVPESLSLVRNYMKLLFERESFHKTKAEEKYVIAGWA 207
Cdd:cd10297    83 PKLHVVKIVAKKYRNFEIPSDMTGVWRYLKNAYARDEFTNTCAADKEIELAYA 135
GST_C_CLIC2 cd10298
C-terminal, alpha helical domain of Chloride Intracellular Channel 2; Glutathione ...
93-195 6.30e-07

C-terminal, alpha helical domain of Chloride Intracellular Channel 2; Glutathione S-transferase (GST) C-terminal domain family, Chloride Intracellular Channel (CLIC) 2 subfamily; CLICs are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes, and they may play roles in the maintenance of these intracellular membranes. The membrane localization domain is present in the N-terminal part of the protein. Structures of soluble CLICs reveal that they adopt a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. CLIC2 contains an intramolecular disulfide bond and exists as a monomer regardless of redox conditions, in contrast to CLIC1 which forms a dimer under oxidizing conditions. It is expressed in most tissues except the brain, and is highly expressed in the lung, spleen, and in cardiac and skeletal muscles. CLIC2 interacts with ryanodine receptors (cardiac RyR2 and skeletal RyR1) and modulates their activity, suggesting that CLIC2 may function in the regulation of calcium release and signaling in cardiac and skeletal muscles.


Pssm-ID: 198331  Cd Length: 138  Bit Score: 47.18  E-value: 6.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215  93 PEFASVGSKIFPTFVSFLK-SKDSSDSTEQALLDELKALEEHLKAHGP-----------------CINGQNVCSVDMSLA 154
Cdd:cd10298     2 KESFDVGSDIFAKFSAYIKnSPENNANQEKALLREFKRLDDYLNTPLPeeidhdsaenitvskrkFLDGDRLTLADCNLL 81
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1807852215 155 PKLYHLKVALGHFKKWSVPESLSLVRNYMKLLFERESFHKT 195
Cdd:cd10298    82 PKLHVIKVAAKKYCDFDIPADFTGVWRYLNNAYEREEFSQT 122
GST_C_CLIC3 cd10299
C-terminal, alpha helical domain of Chloride Intracellular Channel 3; Glutathione ...
93-195 1.89e-06

C-terminal, alpha helical domain of Chloride Intracellular Channel 3; Glutathione S-transferase (GST) C-terminal domain family, Chloride Intracellular Channel (CLIC) 3 subfamily; CLICs are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes, and they may play roles in the maintenance of these intracellular membranes. The membrane localization domain is present in the N-terminal part of the protein. Structures of soluble CLICs reveal that they adopt a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. CLIC3 is highly expressed in placental tissues, and may play a role in fetal development.


Pssm-ID: 198332  Cd Length: 133  Bit Score: 45.53  E-value: 1.89e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1807852215  93 PEFASVGSKIFPTFVSFLKSKDSS--DSTEQALLDELKALEEHLKAHGPC---------------INGQNVCSVDMSLAP 155
Cdd:cd10299     2 KESNTAGNDVFHKFSAFIKNPVPAqdDALQKKLLRALLKLDSYLLTPLPHelaqnphlsesqrrfLDGDALTLADCNLLP 81
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1807852215 156 KLYHLKVALGHFKKWSVPESLSLVRNYMKLLFERESFHKT 195
Cdd:cd10299    82 KLHIVKVVCKHYRQFEIPAELKGVTRYLDSASQEKEFKYT 121
GST_N_4 cd03056
GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with ...
47-80 1.08e-04

GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.


Pssm-ID: 239354 [Multi-domain]  Cd Length: 73  Bit Score: 39.09  E-value: 1.08e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1807852215  47 KPKWFLEVNPEGKVPVINFGDKWIPDSDVIVGIL 80
Cdd:cd03056    39 RTPEFLALNPNGEVPVLELDGRVLAESNAILVYL 72
GST_N_GDAP1 cd03052
GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; ...
23-81 1.31e-04

GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.


Pssm-ID: 239350 [Multi-domain]  Cd Length: 73  Bit Score: 39.07  E-value: 1.31e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1807852215  23 SQRVLLTLEEKKVTYKKHLINV---SDKPKWFLEVNPEGKVPVINFGDKWIPDSDVIVGILE 81
Cdd:cd03052    12 SQKVRLVIAEKGLRCEEYDVSLplsEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73
GST_N_3 cd03049
GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with ...
21-81 2.45e-04

GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.


Pssm-ID: 239347 [Multi-domain]  Cd Length: 73  Bit Score: 38.40  E-value: 2.45e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1807852215  21 PFSQRVLLTLEEK--KVTYKKHLINVSDKPKWFLEVNPEGKVPV-INFGDKWIPDSDVIVGILE 81
Cdd:cd03049    10 PYVRKVRVAAHETglGDDVELVLVNPWSDDESLLAVNPLGKIPAlVLDDGEALFDSRVICEYLD 73
GST_N_Tau cd03058
GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular ...
21-82 2.82e-04

GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin, responses to soil stresses and responses to auxin and cytokinin hormones.


Pssm-ID: 239356 [Multi-domain]  Cd Length: 74  Bit Score: 38.03  E-value: 2.82e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1807852215  21 PFSQRVLLTLEEKKVTYKKHLINVSDKPKWFLEVNP-EGKVPVINFGDKWIPDSDVIVGILEE 82
Cdd:cd03058    10 PFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPvHKKIPVLLHNGKPICESLIIVEYIDE 72
GST_N pfam02798
Glutathione S-transferase, N-terminal domain; Function: conjugation of reduced glutathione to ...
19-77 5.98e-04

Glutathione S-transferase, N-terminal domain; Function: conjugation of reduced glutathione to a variety of targets. Also included in the alignment, but not GSTs: S-crystallins from squid (similarity to GST previously noted); eukaryotic elongation factors 1-gamma (not known to have GST activity and similarity not previously recognized); HSP26 family of stress-related proteins including auxin-regulated proteins in plants and stringent starvation proteins in E. coli (not known to have GST activity and similarity not previously recognized). The glutathione molecule binds in a cleft between the N- and C-terminal domains - the catalytically important residues are proposed to reside in the N-terminal domain.


Pssm-ID: 460698 [Multi-domain]  Cd Length: 76  Bit Score: 37.28  E-value: 5.98e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1807852215  19 DCPFSQRVLLTLEEKKVTYK---KHLINVSDKPKWFLEVNPEGKVPVINFGDKWIPDSDVIV 77
Cdd:pfam02798  10 GSPRAHRIRWLLAEKGVEYEivpLDFGAGPEKSPELLKLNPLGKVPALEDGGKKLTESRAIL 71
PLN02395 PLN02395
glutathione S-transferase
23-84 1.49e-03

glutathione S-transferase


Pssm-ID: 166036 [Multi-domain]  Cd Length: 215  Bit Score: 38.31  E-value: 1.49e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1807852215  23 SQRVLLTLEEKKVTYKK---HLINVSDKPKWFLEVNPEGKVPVINFGDKWIPDSDVIVGILEEKY 84
Cdd:PLN02395   13 PKRALVTLIEKGVEFETvpvDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKY 77
GST_N_Metaxin cd03054
GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a ...
6-83 1.55e-03

GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.


Pssm-ID: 239352 [Multi-domain]  Cd Length: 72  Bit Score: 36.05  E-value: 1.55e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1807852215   6 CVKAAVGAPDVlgdCPFSQRVLLTLEEKKVTYKKHLINvsdkpkwFLEVNPEGKVPVINFGDKWIPDSDVIVGILEEK 83
Cdd:cd03054     5 QWGRAFGLPSL---SPECLKVETYLRMAGIPYEVVFSS-------NPWRSPTGKLPFLELNGEKIADSEKIIEYLKKK 72
GST_N_Omega_like cd03060
GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to ...
20-67 1.85e-03

GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism.


Pssm-ID: 239358 [Multi-domain]  Cd Length: 71  Bit Score: 35.80  E-value: 1.85e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1807852215  20 CPFSQRVLLTLEEKKVTYKKHLINVSDKPKWFLEVNPEGKVPVINFGD 67
Cdd:cd03060     9 CPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGN 56
GRX_family cd02066
Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins ...
18-77 5.01e-03

Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which are members of this family. E. coli GRX2, however, is a 24-kDa protein that belongs to the GSH S-transferase (GST) family.


Pssm-ID: 239017 [Multi-domain]  Cd Length: 72  Bit Score: 34.75  E-value: 5.01e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1807852215  18 GDCPFSQRVLLTLEEKKVTYkkHLINVSDKP---KWFLEVNPEGKVPVINFGDKWIPDSDVIV 77
Cdd:cd02066     8 STCPYCKRAKRLLESLGIEF--EEIDILEDGelrEELKELSGWPTVPQIFINGEFIGGYDDLK 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH