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Conserved domains on  [gi|1804307745|ref|WP_161932134|]
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50S ribosomal protein L33 [Candidatus Chazhemtobacterium aquaticus]

Protein Classification

50S ribosomal protein L33( domain architecture ID 10011480)

50S ribosomal protein L33 is a component of the large ribosomal subunit 50S

Gene Ontology:  GO:0005840|GO:0006412|GO:0003735
PubMed:  24524803|11733066

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 4-53 1.77e-18

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 440037  Cd Length: 52  Bit Score: 70.19  E-value: 1.77e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1804307745  4 KGPRQLAGLRCSECKNFNYISERNRTNTPDKIELKKYCPRCRKHTTHKEV 53
Cdd:COG0267    2 AGMREKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKET 51
 
Name Accession Description Interval E-value
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 4-53 1.77e-18

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 70.19  E-value: 1.77e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1804307745  4 KGPRQLAGLRCSECKNFNYISERNRTNTPDKIELKKYCPRCRKHTTHKEV 53
Cdd:COG0267    2 AGMREKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKET 51
rpmG PRK00595
50S ribosomal protein L33; Validated
 2-53 7.50e-18

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 68.68  E-value: 7.50e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 1804307745  2 AKKGPRQLAGLRCSECKNFNYISERNRTNTPDKIELKKYCPRCRKHTTHKEV 53
Cdd:PRK00595   1 AAKGMRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKET 52
Ribosomal_L33 pfam00471
Ribosomal protein L33;
12-53 2.93e-16

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 64.37  E-value: 2.93e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 1804307745 12 LRCSECKNFNYISERNRTNTPDKIELKKYCPRCRKHTTHKEV 53
Cdd:pfam00471  4 LACTECKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKET 45
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 1-53 4.74e-14

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 59.00  E-value: 4.74e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1804307745  1 MAKKGPRQLAGLRCSECKNFNYISERNRTNTPDKIELKKYCPRCRKHTTHKEV 53
Cdd:TIGR01023  1 MAKKGARELIRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEA 53
 
Name Accession Description Interval E-value
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 4-53 1.77e-18

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 70.19  E-value: 1.77e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1804307745  4 KGPRQLAGLRCSECKNFNYISERNRTNTPDKIELKKYCPRCRKHTTHKEV 53
Cdd:COG0267    2 AGMREKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKET 51
rpmG PRK00595
50S ribosomal protein L33; Validated
 2-53 7.50e-18

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 68.68  E-value: 7.50e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 1804307745  2 AKKGPRQLAGLRCSECKNFNYISERNRTNTPDKIELKKYCPRCRKHTTHKEV 53
Cdd:PRK00595   1 AAKGMRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKET 52
Ribosomal_L33 pfam00471
Ribosomal protein L33;
12-53 2.93e-16

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 64.37  E-value: 2.93e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 1804307745 12 LRCSECKNFNYISERNRTNTPDKIELKKYCPRCRKHTTHKEV 53
Cdd:pfam00471  4 LACTECKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKET 45
rpmG PRK00504
50S ribosomal protein L33; Validated
 5-53 1.59e-15

50S ribosomal protein L33; Validated


Pssm-ID: 234783  Cd Length: 50  Bit Score: 62.63  E-value: 1.59e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 1804307745  5 GPRQLAGLRCSECKNFNYISERNRTNTPDKIELKKYCPRCRKHTTHKEV 53
Cdd:PRK00504   1 MMRKKITLACTECKSRNYTTTKNKKNTPERLELKKFCPRCNKHTLHKET 49
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 1-53 4.74e-14

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 59.00  E-value: 4.74e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1804307745  1 MAKKGPRQLAGLRCSECKNFNYISERNRTNTPDKIELKKYCPRCRKHTTHKEV 53
Cdd:TIGR01023  1 MAKKGARELIRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEA 53
rpl33 CHL00104
ribosomal protein L33
 1-55 1.31e-12

ribosomal protein L33


Pssm-ID: 177033  Cd Length: 66  Bit Score: 55.75  E-value: 1.31e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1804307745  1 MAK-KGPRQLAGLRCSECKN----------FNYISERNRTNTPDKIELKKYCPRCRKHTTHKEVSK 55
Cdd:CHL00104   1 MAKgKDVRVTVILECTSCVRngvnkestgiSRYITQKNRHNTPNRLELKKFCPYCYKHTIHKEIKK 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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