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Conserved domains on  [gi|1800412637|gb|QHO61090|]
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excinuclease ABC subunit C, partial [Limosilactobacillus fermentum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
uvrC super family cl35109
excinuclease ABC subunit UvrC;
2-172 2.10e-77

excinuclease ABC subunit UvrC;


The actual alignment was detected with superfamily member PRK00558:

Pssm-ID: 234792 [Multi-domain]  Cd Length: 598  Bit Score: 241.18  E-value: 2.10e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637   2 PIIKITGQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRC----HGYQGRPCLYYHLGQCLGCCFKEVPEEEYAVQTK 77
Cdd:PRK00558  111 PRLAITRGVAKDKGRYFGPYPSAGAVRETLDLLQKLFPLRTCedsvFKNRKRPCLLYQIGRCLAPCVGLISKEEYAELVD 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637  78 RIKSFLNGNTAQVKKQLTTRMERAAGQLEFERAAEIRDQLHYIEVTVEKQKIISNDKTPRDLFNFYLDKGWLSIQVFFIR 157
Cdd:PRK00558  191 EAKLFLSGKTDEVLKELEEKMEEASENLEFERAARYRDQIQALRRVQEKQKVSLKDGEDADVIAIAVDGGWACVQVFFVR 270

                         170
                  ....*....|....*
gi 1800412637 158 QARLMKREKRLFPVV 172
Cdd:PRK00558  271 GGKLLGRRSYFPKVS 285
 
Name Accession Description Interval E-value
uvrC PRK00558
excinuclease ABC subunit UvrC;
2-172 2.10e-77

excinuclease ABC subunit UvrC;


Pssm-ID: 234792 [Multi-domain]  Cd Length: 598  Bit Score: 241.18  E-value: 2.10e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637   2 PIIKITGQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRC----HGYQGRPCLYYHLGQCLGCCFKEVPEEEYAVQTK 77
Cdd:PRK00558  111 PRLAITRGVAKDKGRYFGPYPSAGAVRETLDLLQKLFPLRTCedsvFKNRKRPCLLYQIGRCLAPCVGLISKEEYAELVD 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637  78 RIKSFLNGNTAQVKKQLTTRMERAAGQLEFERAAEIRDQLHYIEVTVEKQKIISNDKTPRDLFNFYLDKGWLSIQVFFIR 157
Cdd:PRK00558  191 EAKLFLSGKTDEVLKELEEKMEEASENLEFERAARYRDQIQALRRVQEKQKVSLKDGEDADVIAIAVDGGWACVQVFFVR 270

                         170
                  ....*....|....*
gi 1800412637 158 QARLMKREKRLFPVV 172
Cdd:PRK00558  271 GGKLLGRRSYFPKVS 285
UvrC COG0322
Excinuclease UvrABC, nuclease subunit [Replication, recombination and repair];
2-172 1.19e-72

Excinuclease UvrABC, nuclease subunit [Replication, recombination and repair];


Pssm-ID: 440091 [Multi-domain]  Cd Length: 603  Bit Score: 228.85  E-value: 1.19e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637   2 PIIKITGQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRCHGY----QGRPCLYYHLGQCLGCCFKEVPEEEYAVQTK 77
Cdd:COG0322   112 PRIFVTRGVKKDGGRYFGPYPSAGAVRETLDLLQKLFPLRTCSDSlfknRSRPCLLYQIGRCSAPCVGLISEEEYREDVE 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637  78 RIKSFLNGNTAQVKKQLTTRMERAAGQLEFERAAEIRDQLHYIEVTVEKQKIISNDKTPRDLFNFYLDKGWLSIQVFFIR 157
Cdd:COG0322   192 QARRFLEGKTKELIKELEEKMEEAAEELEFERAARLRDQIRALEKVQEKQKVVLPDGGDADVIAIARDGGEACVQVFFVR 271

                         170
                  ....*....|....*
gi 1800412637 158 QARLMKREKRLFPVV 172
Cdd:COG0322   272 GGRLIGRRSFFLEKV 286
uvrC TIGR00194
excinuclease ABC, C subunit; This family consists of the DNA repair enzyme UvrC, an ABC ...
 2-171 6.51e-56

excinuclease ABC, C subunit; This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 272953 [Multi-domain]  Cd Length: 574  Bit Score: 184.49  E-value: 6.51e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637   2 PIIKITGQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRCHGYQ-GRPCLYYHLGQCLGCCFKEVPEEEYAVQTKRIK 80
Cdd:TIGR00194 106 PRLLITRKLKQDKGKYFGPFTNAFALRETLDLLLKLFPLRKCAKHNrNRPCLYYQIGRCLGPCVKEITEEEYQQIVEKIE 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637  81 SFLNGNTAQVKKQLTTRMERAAGQLEFERAAEIRDQLHYIEVTVEKQKIISNDKTPRDLFNFYLDKGWLSIQVFFIRQAR 160
Cdd:TIGR00194 186 LFFNGRPQEVIKELEQKMEKASENLEFEEAARIRDQIAAVRELNEKQHVSLTDLIDLDIIAVAFDGNVAAIQVFFIRQGK 265

                         170
                  ....*....|.
gi 1800412637 161 LMKREKRLFPV 171
Cdd:TIGR00194 266 LIGRDQFDFSL 276
UVR pfam02151
UvrB/uvrC motif;
89-121 1.42e-05

UvrB/uvrC motif;


Pssm-ID: 308001 [Multi-domain]  Cd Length: 36  Bit Score: 40.07  E-value: 1.42e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1800412637  89 QVKKQLTTRMERAAGQLEFERAAEIRDQLHYIE 121
Cdd:pfam02151   2 KLIKELEEEMEEAAENEDFEKAAKLRDQINALK 34
 
Name Accession Description Interval E-value
uvrC PRK00558
excinuclease ABC subunit UvrC;
2-172 2.10e-77

excinuclease ABC subunit UvrC;


Pssm-ID: 234792 [Multi-domain]  Cd Length: 598  Bit Score: 241.18  E-value: 2.10e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637   2 PIIKITGQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRC----HGYQGRPCLYYHLGQCLGCCFKEVPEEEYAVQTK 77
Cdd:PRK00558  111 PRLAITRGVAKDKGRYFGPYPSAGAVRETLDLLQKLFPLRTCedsvFKNRKRPCLLYQIGRCLAPCVGLISKEEYAELVD 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637  78 RIKSFLNGNTAQVKKQLTTRMERAAGQLEFERAAEIRDQLHYIEVTVEKQKIISNDKTPRDLFNFYLDKGWLSIQVFFIR 157
Cdd:PRK00558  191 EAKLFLSGKTDEVLKELEEKMEEASENLEFERAARYRDQIQALRRVQEKQKVSLKDGEDADVIAIAVDGGWACVQVFFVR 270

                         170
                  ....*....|....*
gi 1800412637 158 QARLMKREKRLFPVV 172
Cdd:PRK00558  271 GGKLLGRRSYFPKVS 285
UvrC COG0322
Excinuclease UvrABC, nuclease subunit [Replication, recombination and repair];
2-172 1.19e-72

Excinuclease UvrABC, nuclease subunit [Replication, recombination and repair];


Pssm-ID: 440091 [Multi-domain]  Cd Length: 603  Bit Score: 228.85  E-value: 1.19e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637   2 PIIKITGQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRCHGY----QGRPCLYYHLGQCLGCCFKEVPEEEYAVQTK 77
Cdd:COG0322   112 PRIFVTRGVKKDGGRYFGPYPSAGAVRETLDLLQKLFPLRTCSDSlfknRSRPCLLYQIGRCSAPCVGLISEEEYREDVE 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637  78 RIKSFLNGNTAQVKKQLTTRMERAAGQLEFERAAEIRDQLHYIEVTVEKQKIISNDKTPRDLFNFYLDKGWLSIQVFFIR 157
Cdd:COG0322   192 QARRFLEGKTKELIKELEEKMEEAAEELEFERAARLRDQIRALEKVQEKQKVVLPDGGDADVIAIARDGGEACVQVFFVR 271

                         170
                  ....*....|....*
gi 1800412637 158 QARLMKREKRLFPVV 172
Cdd:COG0322   272 GGRLIGRRSFFLEKV 286
uvrC TIGR00194
excinuclease ABC, C subunit; This family consists of the DNA repair enzyme UvrC, an ABC ...
 2-171 6.51e-56

excinuclease ABC, C subunit; This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 272953 [Multi-domain]  Cd Length: 574  Bit Score: 184.49  E-value: 6.51e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637   2 PIIKITGQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRCHGYQ-GRPCLYYHLGQCLGCCFKEVPEEEYAVQTKRIK 80
Cdd:TIGR00194 106 PRLLITRKLKQDKGKYFGPFTNAFALRETLDLLLKLFPLRKCAKHNrNRPCLYYQIGRCLGPCVKEITEEEYQQIVEKIE 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637  81 SFLNGNTAQVKKQLTTRMERAAGQLEFERAAEIRDQLHYIEVTVEKQKIISNDKTPRDLFNFYLDKGWLSIQVFFIRQAR 160
Cdd:TIGR00194 186 LFFNGRPQEVIKELEQKMEKASENLEFEEAARIRDQIAAVRELNEKQHVSLTDLIDLDIIAVAFDGNVAAIQVFFIRQGK 265

                         170
                  ....*....|.
gi 1800412637 161 LMKREKRLFPV 171
Cdd:TIGR00194 266 LIGRDQFDFSL 276
uvrC PRK14666
excinuclease ABC subunit C; Provisional
 2-169 1.41e-41

excinuclease ABC subunit C; Provisional


Pssm-ID: 237782 [Multi-domain]  Cd Length: 694  Bit Score: 147.34  E-value: 1.41e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637   2 PIIKITGQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRCH----GYQGRPCLYYHLGQCLGCCFKEVPEEEYAVQTK 77
Cdd:PRK14666  110 PRLEIVRKARRDGARYFGPFTSASAARETWKTIHRAFPLRRCSdrafGNRVRACLYHFMGQCLGPCVNDVPRETYAALVR 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637  78 RIKSFLNGNTAQVKKQLTTRMERAAGQLEFERAAEIRDQLHYIEVTVEKQKIISNDKTPRDLFNFYLDKGWLSIQVFFIR 157
Cdd:PRK14666  190 KVEMLLSGRSGELVDALRTEMEAASEALEFERAAVLRDQIRAVERTVERQAAVLPGGGDLDVVGLVEAEGGLALGVLFVR 269

                         170
                  ....*....|..
gi 1800412637 158 QARLMkrEKRLF 169
Cdd:PRK14666  270 QGVLL--DGRAF 279
uvrC PRK14669
excinuclease ABC subunit C; Provisional
 2-169 2.39e-31

excinuclease ABC subunit C; Provisional


Pssm-ID: 237784 [Multi-domain]  Cd Length: 624  Bit Score: 118.47  E-value: 2.39e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637   2 PIIKITGQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRCH----GYQGRPCLYYHLGQCLGCCFKEVP-EEEYAVQT 76
Cdd:PRK14669  111 PRVYVTRRLRKDGAQYYGPFFPANLAYRLVDLIHRHFLVPSCKvdltRYHPRPCLQFYIHRCLGPCVQGLTtDEAYAEAV 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637  77 KRIKSFLNGNTAQVKKQLTTRMERAAGQLEFERAAEIRDQLHYIEVTVEKQKIISNDKTPRDLFNFYLDKGWLSIQVFFI 156
Cdd:PRK14669  191 RDVRLFLEGRHSDLARSLRARMEAAALEMQFELAAKYRDLITTVEELEEKQRMAAAKGDDADVFGYHYENPMVAVNLFHM 270

                         170
                  ....*....|...
gi 1800412637 157 RQARLMKREKRLF 169
Cdd:PRK14669  271 RGGKIVDRREFFW 283
uvrC PRK14670
excinuclease ABC subunit C; Provisional
 2-165 6.27e-26

excinuclease ABC subunit C; Provisional


Pssm-ID: 173133 [Multi-domain]  Cd Length: 574  Bit Score: 103.07  E-value: 6.27e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637   2 PIIKITGQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRCHGYQGRPCLYYHLGQCLGCCFKEVPEEEYAVQTKRIKS 81
Cdd:PRK14670   90 PRIFKTRKIINDGSEYFGPYVNVKKLDLVLDLINKTFKTRKCKKKSKNPCLYFHMGQCLGVCYREDLEKEYQKEVDKIKH 169

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637  82 FLNGNTAQVKKQLTTRMERAAGQLEFERAAEIRD-QLHYIEVTvEKQKIISNDKTPRDLFNFYLDKGWLSIQVFFIRQAR 160
Cdd:PRK14670  170 ILNGNISKLLSQIEIKMKEAIQKEDFEAAIKLKEtKRSLIEIS-QTQIITKINKLSIDYVYIHPTENLNTIVILKYKDGK 248


                  ....*
gi 1800412637 161 LMKRE 165
Cdd:PRK14670  249 LVEKD 253
uvrC PRK14667
excinuclease ABC subunit C; Provisional
 2-165 8.46e-24

excinuclease ABC subunit C; Provisional


Pssm-ID: 237783 [Multi-domain]  Cd Length: 567  Bit Score: 96.73  E-value: 8.46e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637   2 PIIKITGQVKKDGAYyFGPYPNVYAAEETVHFIQKVFPLRRCHGYQGR--PCLYYHLGQCLGCCFKEVPEEEYAVQTKRI 79
Cdd:PRK14667  111 PTVKIVRGTGEKGEY-FGPFLPARKARKVKKLIHKLFKLRTCDPMPKRkePCMDYHLGLCSGPCCGKISKEDYELSVKSA 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637  80 KSFLNGNTAQVKKQLTTRMERAAGQLEFERAAEIRDQLHYIEVTVEKQKIISNDKTPRDLFNFYLDKGWLsiqvFFIRQA 159
Cdd:PRK14667  190 KAFLSGNVKEVLPELYDKIEEYSQKLMFEKAAVIRDQILALENLIKGQEVSGLPIEEADIFYFMGSRLGL----FLVRSS 265


                  ....*.
gi 1800412637 160 RLMKRE 165
Cdd:PRK14667  266 KLVGKE 271
PRK07883 PRK07883
DEDD exonuclease domain-containing protein;
2-129 6.02e-23

DEDD exonuclease domain-containing protein;


Pssm-ID: 236123 [Multi-domain]  Cd Length: 557  Bit Score: 94.21  E-value: 6.02e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637   2 PIIKITGQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRC------HGYQGRPCLYYHLGQCLGCCFKEVPEEEYAVQ 75
Cdd:PRK07883  313 PRLSVVRAVEDDGAAYLGPFRSRRAAEEAAEALARAFPLRQCtdrlsrRARHGPACALAELGRCPAPCDGRESAAEYAEA 392

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1800412637  76 TKRIKSFLNGNTAQVKKQLTTRMERAAGQLEFERAAEIRDQLH-YIEVTVEKQKI 129
Cdd:PRK07883  393 VARARAALTGDDDAVLAALRARIDRLAAAERFEEAARLRDRLAaLLRALARAQRL 447
uvrC PRK14668
excinuclease ABC subunit C; Provisional
 2-121 8.64e-22

excinuclease ABC subunit C; Provisional


Pssm-ID: 184785 [Multi-domain]  Cd Length: 577  Bit Score: 90.98  E-value: 8.64e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637   2 PIIKITgQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRC--HGYQGR--PCLYYHLGQCLGCCFKEVPEEEYAVQTK 77
Cdd:PRK14668  109 PRIEVT-RDPDEGATVFGPYTDKGRVETVVKALRETYGLRGCsdHKYSNRdrPCLDYEMGLCTAPCTGEIDEEAYAEDVE 187

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1800412637  78 RIKSFLNGNTAQVKKQLTTRMERAAGQLEFERAAEIRDQLHYIE 121
Cdd:PRK14668  188 SAERFFEGETGVLADPLRREMEAAAQAQEFERAANLRDRLEAVE 231
uvrC PRK14672
excinuclease ABC subunit C; Provisional
 2-165 1.01e-21

excinuclease ABC subunit C; Provisional


Pssm-ID: 173135 [Multi-domain]  Cd Length: 691  Bit Score: 90.95  E-value: 1.01e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637   2 PIIKITGQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRCHGYQGR--PCLYYHLGQCLGCCFKEVPEEEYAVQTKRI 79
Cdd:PRK14672  116 PRIFRTRQFCQDGARYFGPFPDVQILDSFLKLILRTYKIRTCTTLRKRknPCLYYHLKRCDAPCCGWVSPRTYQKDIHEI 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800412637  80 KSFLNGNTAQVKKQLTTRMERAAGQLEFERAAEIRDQLHYIEVTVEKQKIISNDKTPRDLFNFYLDKGWLSIQVFFIRQA 159
Cdd:PRK14672  196 TLLLEGNIDATVARLEKRMKRAVRQEAFEAAARIRDDIQAIRCITHKSLVQDMDERARDYIAWSSTGAIVTFAVLRMRGG 275


                  ....*.
gi 1800412637 160 RLMKRE 165
Cdd:PRK14672  276 KLNGRE 281
UvrB COG0556
Excinuclease UvrABC helicase subunit UvrB [Replication, recombination and repair];
69-121 1.13e-07

Excinuclease UvrABC helicase subunit UvrB [Replication, recombination and repair];


Pssm-ID: 440322 [Multi-domain]  Cd Length: 657  Bit Score: 50.39  E-value: 1.13e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1800412637  69 EEEYAVQTKRIKSFLNGNTAQVKKQLTTRMERAAGQLEFERAAEIRDQLHYIE 121
Cdd:COG0556   603 ETEELVAEADAAKLSKEELEKLIKELEKEMKEAAKNLEFEEAARLRDEIKELK 655
PRK05298 PRK05298
excinuclease ABC subunit UvrB;
92-118 2.83e-06

excinuclease ABC subunit UvrB;


Pssm-ID: 235395 [Multi-domain]  Cd Length: 652  Bit Score: 46.19  E-value: 2.83e-06
                          10        20
                  ....*....|....*....|....*..
gi 1800412637  92 KQLTTRMERAAGQLEFERAAEIRDQLH 118
Cdd:PRK05298  616 KELEKQMKEAAKNLEFEEAARLRDEIK 642
UVR pfam02151
UvrB/uvrC motif;
89-121 1.42e-05

UvrB/uvrC motif;


Pssm-ID: 308001 [Multi-domain]  Cd Length: 36  Bit Score: 40.07  E-value: 1.42e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1800412637  89 QVKKQLTTRMERAAGQLEFERAAEIRDQLHYIE 121
Cdd:pfam02151   2 KLIKELEEEMEEAAENEDFEKAAKLRDQINALK 34
McsA COG3880
Protein-arginine kinase activator protein McsA [Posttranslational modification, protein ...
 85-121 7.54e-03

Protein-arginine kinase activator protein McsA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443088 [Multi-domain]  Cd Length: 173  Bit Score: 35.26  E-value: 7.54e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1800412637  85 GNTAQVKKQ---LTTRMERAAGQLEFERAAEIRDQLHYIE 121
Cdd:COG3880   126 GGRLRIKREieeLKEELQEAVEKEEYEEAAELRDEIRELE 165
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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