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Conserved domains on  [gi|1799624465|gb|QHN51557|]
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NADH dehydrogenase subunit 2 [Pomatoschistus microps]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475913)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-325 1.46e-175

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 490.86  E-value: 1.46e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465   1 MNPYILALLLFGLLLGTGVTATSSHWLLAWMGLEINTLAIIPLMTRHHHPRAIEAATKYFLTQATAAATLLFASVTNAWL 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  81 TGQWDIQLMTHPLPTTLIILALALKIGLAPLHTWLPEVLQGLDLTTGLVLSTWQKLAPFALLVQIPTPHPEVLIVLGLLS 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMLLVVQFSPSLTLLALGTYLVMTLSTFMIFSFNKATTVNALATSWAKAPLIT 240
Cdd:MTH00135  161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 241 SIAPLLLLSLGGLPPMTGFLPKWLILQELTKQQLPLTAVLAAFTALLSLYFYLRLSYAMTLTLSPNSVSGTPIWRLASGK 320
Cdd:MTH00135  241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQ 320


                  ....*
gi 1799624465 321 ITMPM 325
Cdd:MTH00135  321 LTLPL 325
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-325 1.46e-175

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 490.86  E-value: 1.46e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465   1 MNPYILALLLFGLLLGTGVTATSSHWLLAWMGLEINTLAIIPLMTRHHHPRAIEAATKYFLTQATAAATLLFASVTNAWL 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  81 TGQWDIQLMTHPLPTTLIILALALKIGLAPLHTWLPEVLQGLDLTTGLVLSTWQKLAPFALLVQIPTPHPEVLIVLGLLS 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMLLVVQFSPSLTLLALGTYLVMTLSTFMIFSFNKATTVNALATSWAKAPLIT 240
Cdd:MTH00135  161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 241 SIAPLLLLSLGGLPPMTGFLPKWLILQELTKQQLPLTAVLAAFTALLSLYFYLRLSYAMTLTLSPNSVSGTPIWRLASGK 320
Cdd:MTH00135  241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQ 320


                  ....*
gi 1799624465 321 ITMPM 325
Cdd:MTH00135  321 LTLPL 325
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 19-299 1.54e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 97.88  E-value: 1.54e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  19 VTATSSHWLLAWMGLEINTLAIIPL-MTRHHHPRAIEAATKYFLTqataaatllfASVTNAWL----------TGQWDIQ 87
Cdd:COG1007   117 LMASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLL----------GALSSGFLlygisllygaTGSLNLA 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  88 LMTHPLPTT------------LIILALALKIGLAPLHTWLPEVLQGLDLTTGLVLSTWQKLAPFALLVQI-----PTPHP 150
Cdd:COG1007   187 GIAAALAAGganspllllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlveafPGLAA 266

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 151 E---VLIVLGLLSTLVGGWGGLNQTQLRKILAYSSIAHLGWMLLVV----QFSPSLTLLALGTYLVMTLSTFMIFSF--- 220
Cdd:COG1007   267 DwqlLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVILLlsr 346

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 221 --NKATTVNALATSWAKAPLITSIAPLLLLSLGGLPPMTGFLPKWLILQELTKQQLPLTAVLAAFTALLSLYFYLRLSYA 298
Cdd:COG1007   347 kgGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426


                  .
gi 1799624465 299 M 299
Cdd:COG1007   427 M 427
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-285 1.23e-20

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 90.45  E-value: 1.23e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  23 SSHWLLAWMGLEINTLAIIPLMT-RHHHPRAIEAATKYFLTQATAAATLLFASVTNAWLTGQWDIQLMTHPLPTT----- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  97 ------LIILALALKIGLAPLHTWLPEVLQGLDLT-TGLVLSTWQKLAPFALLVQIPTPHPE------VLIVLGLLSTLV 163
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 164 GGWGGLNQTQLRKILAYSSIAHLGWMLLVV----QFSPSLTLLALGTYLVMTLSTF-----MIFSFNKATTVNALATSWA 234
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1799624465 235 KAPLITSIAPLLLLSLGGLPPMTGFLPKWLILQELTKQQLPLTAVLAAFTA 285
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 97-299 1.13e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 80.76  E-value: 1.13e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  97 LIILALALKIGLAPLHTWLPEVLQGLDLTTGLVLSTWQKLAPFALLVQI--------PTPHPEVLIVLGLLSTLVGGWGG 168
Cdd:TIGR01770 208 LILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfgfSEAWQIFLAIIAFLSMLIGNFGA 287

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 169 LNQTQLRKILAYSSIAHLGWMLLVVQFSPSLTLLALG----TYLVMTLSTFMIFS------FNKATTVNALATSWAKAPL 238
Cdd:TIGR01770 288 LAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLfyifIYALMSLGAFGVLSllrsykDEWIEYISDFAGLFKTNPI 367

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1799624465 239 ITSIAPLLLLSLGGLPPMTGFLPKWLILQELTKQQLPLTAVLAAFTALLSLYFYLRLSYAM 299
Cdd:TIGR01770 368 LAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVM 428
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-325 1.46e-175

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 490.86  E-value: 1.46e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465   1 MNPYILALLLFGLLLGTGVTATSSHWLLAWMGLEINTLAIIPLMTRHHHPRAIEAATKYFLTQATAAATLLFASVTNAWL 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  81 TGQWDIQLMTHPLPTTLIILALALKIGLAPLHTWLPEVLQGLDLTTGLVLSTWQKLAPFALLVQIPTPHPEVLIVLGLLS 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMLLVVQFSPSLTLLALGTYLVMTLSTFMIFSFNKATTVNALATSWAKAPLIT 240
Cdd:MTH00135  161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 241 SIAPLLLLSLGGLPPMTGFLPKWLILQELTKQQLPLTAVLAAFTALLSLYFYLRLSYAMTLTLSPNSVSGTPIWRLASGK 320
Cdd:MTH00135  241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQ 320


                  ....*
gi 1799624465 321 ITMPM 325
Cdd:MTH00135  321 LTLPL 325
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-316 3.09e-127

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 368.09  E-value: 3.09e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465   1 MNPYILALLLFGLLLGTGVTATSSHWLLAWMGLEINTLAIIPLMTRHHHPRAIEAATKYFLTQATAAATLLFASVTNAWL 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  81 TGQWDIQLMTHPLPTTLIILALALKIGLAPLHTWLPEVLQGLDLTTGLVLSTWQKLAPFALLVQI-PTPHPEVLIVLGLL 159
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQIsHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMLLVVQFSPSLTLLALGTYLVMTLSTFMIFSFNKATTVNALATSWAKAPLI 239
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1799624465 240 TSIAPLLLLSLGGLPPMTGFLPKWLILQELTKQQLPLTAVLAAFTALLSLYFYLRLSYAMTLTLSPNSVSGTPIWRL 316
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRF 317
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-324 1.23e-113

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 333.71  E-value: 1.23e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465   1 MNPYILALLLFGLLLGTGVTATSSHWLLAWMGLEINTLAIIPLMTRHHHPRAIEAATKYFLTQATAAATLLFASVTNAWL 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  81 TGQWDIQLMTHPLPTTLIILALALKIGLAPLHTWLPEVLQGLDLTTGLVLSTWQKLAPFALLVQI-PTPHPEVLIVLGLL 159
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTsNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMLLVVQFSPSLTLLALGTYLVMTLSTFMIFSFNKATTVNALATSWAKAPLI 239
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 240 TSIAPLLLLSLGGLPPMTGFLPKWLILQELTKQQLPLTAVLAAFTALLSLYFYLRLSYAMTLTLSPNSVSGTPIWRLASG 319
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320


                  ....*
gi 1799624465 320 KITMP 324
Cdd:MTH00112  321 KNTLT 325
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-307 7.84e-112

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 329.11  E-value: 7.84e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465   1 MNPYILALLLFGLLLGTGVTATSSHWLLAWMGLEINTLAIIPLMTRHHHPRAIEAATKYFLTQATAAATLLFASVTNAWL 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  81 TGQWDIQLMTHPLPTTLIILALALKIGLAPLHTWLPEVLQGLDLTTGLVLSTWQKLAPFALLVQI-PTPHPEVLIVLGLL 159
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQIsPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMLLVVQFSPSLTLLALGTYLVMTLSTFMIFSFNKATTVNALATSWAKAPLI 239
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1799624465 240 TSIAPLLLLSLGGLPPMTGFLPKWLILQELTKQQLPLTAVLAAFTALLSLYFYLRLSYAMTLTLSPNS 307
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPST 308
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-321 3.39e-96

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 289.18  E-value: 3.39e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465   1 MNPYILALLLFGLLLGTGVTATSSHWLLAWMGLEINTLAIIPLMTRHHHPRAIEAATKYFLTQATAAATLLFASVTNAWL 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  81 TGQWDIQLMTHPLPTTLIILALALKIGLAPLHTWLPEVLQGLDLTTGLVLSTWQKLAPFALLVQIPT-PHPEVLIVLGLL 159
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPaLNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMLLVVQFSPSLTLLALGTYLVMTLSTFMIFSFNKATTVNALATSWAKAPLI 239
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 240 TSIAPLLLLSLGGLPPMTGFLPKWLILQELTKQQLPLTAVLAAFTALLSLYFYLRLSYAMTLTLSPNSVSGTPIWRLASG 319
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320


                  ..
gi 1799624465 320 KI 321
Cdd:MTH00200  321 SN 322
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 22-306 1.47e-71

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 226.35  E-value: 1.47e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  22 TSSHWLLAWMGLEINTLAIIPLMTRHHHPRAIEAATKYFLTQATAAATLLFASVTNAWLTGQWDIQLMTHPLPTTLIILA 101
Cdd:MTH00041   22 SSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITLA 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 102 LALKIGLAPLHTWLPEVLQGLDLTTGLVLSTWQKLAPFALLVQI-PTPHPEVLIVLGLLSTLVGGWGGLNQTQLRKILAY 180
Cdd:MTH00041  102 LALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISIsNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAF 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 181 SSIAHLGWMLLVVQFSPSLTLLALGTYLVMTLSTFMIFSFNKATTVNALATSWAKAPLITSIAPLLLLSLGGLPPMTGFL 260
Cdd:MTH00041  182 SSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFL 261

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1799624465 261 PKWLILQELTKQQLPLTAVLAAFTALLSLYFYLRLSYAMTLTLSPN 306
Cdd:MTH00041  262 NKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQ 307
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 23-306 3.45e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 173.09  E-value: 3.45e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  23 SSHWLLAWMGLEINTLAIIPLMTRHHHPRAIEAATKYFLTQATAAATLLFASVTNAWLTGqwdiqlMTHPLPTTLIILAL 102
Cdd:MTH00160   24 SNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLM------LFNNISSMLINSSL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 103 ALKIGLAPLHTWLPEVLQGLDLTTGLVLSTWQKLAPFALLVQIPTPhpEVLIVLGLLSTLVGGWGGLNQTQLRKILAYSS 182
Cdd:MTH00160   98 LLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINN--NFIIIIIILSAIIGAIGGLNQTSLRKILAYSS 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 183 IAHLGWMLLVVQFSPSLTLLALGTYLVMTLSTFMIFSFNKATTVNALATSWAKAPLITSIAPLLLLSLGGLPPMTGFLPK 262
Cdd:MTH00160  176 INHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLPK 255

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1799624465 263 WLILQELTKQQLPLTAVLAAFTALLSLYFYLRLSYAMTLTLSPN 306
Cdd:MTH00160  256 WIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNK 299
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 19-304 2.11e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 165.83  E-value: 2.11e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  19 VTATSSHWLLAWMGLEINTLAIIPLMTRHHHPRAIEAATKYFLTQATAAATLLFASVTNAWLTGQWDIQLMthplpttlI 98
Cdd:MTH00144   19 LSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSMSL--------L 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  99 ILALALKIGLAPLHTWLPEVLQGLDLTTGLVLSTWQKLAPFALLVQIPTPHPEV--LIVLGLLSTLVGGWGGLNQTQLRK 176
Cdd:MTH00144   91 LLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAylLCVISVLSALVGSIGGLNQTQVRA 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 177 ILAYSSIAHLGWMLLVVQFSPSLTLLALGTYLVMTLSTFMIFSFNKATTVNALaTSWAKAPLITSIAPLLLLSLGGLPPM 256
Cdd:MTH00144  171 LLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDL-GSLKPSYKTGLSIISLLLSLGGLPPF 249

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1799624465 257 TGFLPKWLILQELTKQQLPLTAVLAAFTALLSLYFYLRLSYAMTLTLS 304
Cdd:MTH00144  250 LGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSS 297
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 19-325 2.71e-41

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 147.23  E-value: 2.71e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  19 VTATSSHWLLAWMGLEINTLAIIPLMTRHHHPRAIEAATKYFLTQATAAATLLFASvtnawlTGQWDIQLMTHPLPTTLI 98
Cdd:MTH00011   21 MALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLLKNITALML 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  99 ILALALKIGLAPLHTWLPEVLQGLDLTTGLVLSTWQKLAPFALLVQIPTPHPEVLIV-LGLLSTLVGGWGGLNQTQLRKI 177
Cdd:MTH00011   95 LVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTsMAAMSALAGGLGGMNQTQLRPL 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 178 LAYSSIAHLGWMLLVVQFSPSLTLLALGTYLVMTLSTFMIFSFNKATTVNALATSWAKAPLITSIAPLLLLSLGGLPPMT 257
Cdd:MTH00011  175 LAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFT 254

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1799624465 258 GFLPKWLILQELTKQQLPLTAVLAAFTALLSLYFYLRLSYAMTlTLSPNSVSGTPIWRLASGKITMPM 325
Cdd:MTH00011  255 GFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFM-YLSPTFSSLKSAPYEPKTKILISM 321
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 23-297 2.23e-40

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 144.43  E-value: 2.23e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  23 SSHWLLAWMGLEINTLAIIPLMTRHHHPRAIEAATKYFLTQATAAATLlfasvtnawLTGQWDIQ--LMTHPLPTTLIIL 100
Cdd:MTH00197   17 SSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALL---------LMGGSLSFsnLYLSLLSVVLVIL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 101 ALALKIGLAPLHTWLPEVLQGLDLTTGLVLSTWQKLAPFALLVQIpTPHPEVLIVLGLLSTLVGGWGGLNQTQLRKILAY 180
Cdd:MTH00197   88 GLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFN-SSSFMGLLICSVLSSLIGGIGGMNQSNIRQLLAY 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 181 SSIAHLGWMLLVVQFSPSLTLLALGTYLVMTLSTFMIFSFNKATTVNALATSWAKAPLITSIAPLLLLSLGGLPPMTGFL 260
Cdd:MTH00197  167 SSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFF 246

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1799624465 261 PKWLILQELTKQQLPLTAVLAAFTALLSLYFYLRLSY 297
Cdd:MTH00197  247 LKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 23-295 1.48e-26

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 108.19  E-value: 1.48e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  23 SSHWLLAWMGLEINTLAIIPLMTRHHHP-RAIEAATKYF-------------LTQATAAATLLFASVTNAWLTGQWDIQL 88
Cdd:MTH00196   12 SSNWLSVYLAIELQTLSLFILIAQNRGSgYSAEAGLKYFvlgalssglflfgCALLCGTTGGLHLSYINLVLNSGQSFSS 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  89 MTHPLPTTLIILALALKIGLAPLHTWLPEVLQGLDLTTGLVLSTWQKLAPFALLVQIpTPHPEVLIVLGLLSTLVGGWGG 168
Cdd:MTH00196   92 VSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSI-GLNVNILLIGGLFSLFVGAIGA 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 169 LNQTQLRKILAYSSIAHLGWMLLVVQF----SPSLTLLALGTYLVMTLSTFMI---FSFNKATTVNALATSwAKAPLITS 241
Cdd:MTH00196  171 LNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSICVFSIilaLNVYKNLIIEFSGLS-RRLPILAI 249

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1799624465 242 IAPLLLLSLGGLPPMTGFLPKWLILQELTKQQLPLTAVLAAFTALLSLYFYLRL 295
Cdd:MTH00196  250 TLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 19-299 1.54e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 97.88  E-value: 1.54e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  19 VTATSSHWLLAWMGLEINTLAIIPL-MTRHHHPRAIEAATKYFLTqataaatllfASVTNAWL----------TGQWDIQ 87
Cdd:COG1007   117 LMASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLL----------GALSSGFLlygisllygaTGSLNLA 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  88 LMTHPLPTT------------LIILALALKIGLAPLHTWLPEVLQGLDLTTGLVLSTWQKLAPFALLVQI-----PTPHP 150
Cdd:COG1007   187 GIAAALAAGganspllllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlveafPGLAA 266

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 151 E---VLIVLGLLSTLVGGWGGLNQTQLRKILAYSSIAHLGWMLLVV----QFSPSLTLLALGTYLVMTLSTFMIFSF--- 220
Cdd:COG1007   267 DwqlLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVILLlsr 346

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 221 --NKATTVNALATSWAKAPLITSIAPLLLLSLGGLPPMTGFLPKWLILQELTKQQLPLTAVLAAFTALLSLYFYLRLSYA 298
Cdd:COG1007   347 kgGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426


                  .
gi 1799624465 299 M 299
Cdd:COG1007   427 M 427
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-285 1.23e-20

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 90.45  E-value: 1.23e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  23 SSHWLLAWMGLEINTLAIIPLMT-RHHHPRAIEAATKYFLTQATAAATLLFASVTNAWLTGQWDIQLMTHPLPTT----- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  97 ------LIILALALKIGLAPLHTWLPEVLQGLDLT-TGLVLSTWQKLAPFALLVQIPTPHPE------VLIVLGLLSTLV 163
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 164 GGWGGLNQTQLRKILAYSSIAHLGWMLLVV----QFSPSLTLLALGTYLVMTLSTF-----MIFSFNKATTVNALATSWA 234
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1799624465 235 KAPLITSIAPLLLLSLGGLPPMTGFLPKWLILQELTKQQLPLTAVLAAFTA 285
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 22-295 3.57e-19

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 88.15  E-value: 3.57e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  22 TSSHWLLAWMGLEINTLAIIPLMTRHHHP-RAIEAATKYFLTQATAAATLLFASVTNAWLTGQWDIQ----LMTHPLPTT 96
Cdd:MTH00199  115 SSINWLSIYLAIELQTLTLFILVALKRDSaYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQginsILTGDVGKI 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  97 LIILALALKIGLAPLHTWLPEVLQGLDLTTGLVLSTWQKLAPFALLVQIpTPHPEVLIVLGLLSTLVGGWGGLNQTQLRK 176
Cdd:MTH00199  195 LITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQI-GPVTNVVLICAVLSIIYGAIGALNQTKIKR 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 177 ILAYSSIAHLGWMLLVVQF----SPSLTLLALGTYLVMTLSTFMI---FSFNKATTVNALATSwAKAPLITSIAPLLLLS 249
Cdd:MTH00199  274 LLAYSGIGHMGFILFGVAIgsfeSIQASLIYMIIYVIMSICSFSIilsLKLTKGLIVEVSGLS-RKNPVIALTLALTFLS 352

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1799624465 250 LGGLPPMTGFLPKWLILQELTKQQLPLTAVLAAFTALLSLYFYLRL 295
Cdd:MTH00199  353 IAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
19-299 1.01e-18

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 86.80  E-value: 1.01e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  19 VTATSSHWLLAWMGLEINTLAIIPL-MTRHHHPRAIEAATKYFLTQAT--------------AAATLLFASVTNAWLTGQ 83
Cdd:PRK05777  118 VMVSANDLLTLFLGLELLSLPLYALaALRRDRRRSLEAAIKYFVLGALasgfllygmsllygATGSLSFAGIAKALADGS 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  84 WDIQLMThpLPTTLIILALALKIGLAPLHTWLPEVLQGLDLTTGLVLSTWQKLAPFALLVQI-----PTPHPE---VLIV 155
Cdd:PRK05777  198 GNSLLLL--FGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLlvvafGGLSEDwqqVLAI 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 156 LGLLSTLVGGWGGLNQTQLRKILAYSSIAHLGWMLLVV----QFSPSLTLLALGTYLVMTLSTFMIFSFNK-----ATTV 226
Cdd:PRK05777  276 IAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLaagtAEGYSAVLFYLLAYLFMTLGAFGVISLLRrkggeAESI 355

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1799624465 227 NALATSWAKAPLITSIAPLLLLSLGGLPPMTGFLPKWLILQELTKQQLPLTAVLAAFTALLSLYFYLRLSYAM 299
Cdd:PRK05777  356 SDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVIKLM 428
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 97-299 1.13e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 80.76  E-value: 1.13e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  97 LIILALALKIGLAPLHTWLPEVLQGLDLTTGLVLSTWQKLAPFALLVQI--------PTPHPEVLIVLGLLSTLVGGWGG 168
Cdd:TIGR01770 208 LILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfgfSEAWQIFLAIIAFLSMLIGNFGA 287

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 169 LNQTQLRKILAYSSIAHLGWMLLVVQFSPSLTLLALG----TYLVMTLSTFMIFS------FNKATTVNALATSWAKAPL 238
Cdd:TIGR01770 288 LAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLfyifIYALMSLGAFGVLSllrsykDEWIEYISDFAGLFKTNPI 367

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1799624465 239 ITSIAPLLLLSLGGLPPMTGFLPKWLILQELTKQQLPLTAVLAAFTALLSLYFYLRLSYAM 299
Cdd:TIGR01770 368 LAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVM 428
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 30-299 3.06e-14

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 73.26  E-value: 3.06e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  30 WMGLEINTLAIIPLMTRHHHPRAIEAATKYFLTQATAAATLLFASVTNAWLTGQWDIQLMTHPLPT----------TLII 99
Cdd:COG0651   133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAEldpglllaafALLL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 100 LALALKIGLAPLHTWLPE-----------VLQGLDLTTGLVLstwqkLAPFALLVQIPTPHP---EVLIVLGLLSTLVGG 165
Cdd:COG0651   213 VGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVYA-----ILRVLTLLFGADPALflgTLLLVLGLLTMLVGA 287

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 166 WGGLNQTQLRKILAYSSIAHLGWMLLVVQFSPSLTLLALGTYLVMT--------LSTFMIFSFNKATTVNALATSWAKAP 237
Cdd:COG0651   288 LGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHalakallfLAAGAIERATGTRDLDKLGGLGKRMP 367

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1799624465 238 LITSIAPLLLLSLGGLPPMTGFLPKWLILQELTKQQLPLTAVLAAFTALLSLYFYLRLSYAM 299
Cdd:COG0651   368 LTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRA 429
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 23-214 1.44e-11

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 65.65  E-value: 1.44e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  23 SSHWLLAWMGLEINTLAIIPLMTRHHHPRAI---------EAATKYFLTQATAAATLLFASVTNAWLTGQ---------- 83
Cdd:MTH00198  207 SANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNegmlgtilsa 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  84 ----WDIQLMTHPLPTTLIILALALKIGLAPLHTWLPEVLQGLDLTTGLVLSTWQKLAPFALLVQIPTPhPEVLIVLGLL 159
Cdd:MTH00198  287 tletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVIT-SKLLLSVAII 365

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1799624465 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMLLVVQFSPSLTLLALGTYLVMTLST 214
Cdd:MTH00198  366 SLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTYLVS 420
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 92-299 2.22e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 58.44  E-value: 2.22e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  92 PLPTTLIILALAL-----KIGLAPLHTWLPEV-----------LQGLDLTTG---------LVLSTWQKLAPFALLVQIp 146
Cdd:PRK12667  218 PPLALGVALALALwaftiKAAIFPNHFWLPDAhpaapspvsamLSGLVVNVGayaiirflyTIFGISPSLIDFRAALSP- 296

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 147 tphpeVLIVLGLLSTLVGGWGGLNQTQLRKILAYSSIAHLGWMLLVVQFSPSLTLLALGTYLV--------MTLSTFMIF 218
Cdd:PRK12667  297 -----ILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIInhaiakslLFLASGVFI 371

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 219 SFNKATTVNALATSWAKAPLITSIAPLLLLSLGGLPPMTGFLPKWLILQELTKQQLPLTAVLAAFTALLSLYFYLRLSYA 298
Cdd:PRK12667  372 HAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYS 451


                  .
gi 1799624465 299 M 299
Cdd:PRK12667  452 L 452
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-191 4.33e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 57.64  E-value: 4.33e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  50 PRAIEAATKYFLTQATAAATLLFASVTNAWLTGQ-WDI-QLMTHPLPTTL-------IILALALKIGLAPLHTWLPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLlELLNLPLPFGVqtwlflaFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1799624465 120 QGLDLTTGLVLSTWQKLAPFALLVQIPTPHPE-------VLIVLGLLSTLVGGWGGLNQTQLRKILAYSSIAHLGWMLL 191
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFNLPLFPDaslyfapVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
97-299 5.67e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 57.37  E-value: 5.67e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  97 LIILALALKIGLAPLHTWLPEVLQGLDLTTGLVLSTWQKLAPFALLVQI-----PTPHPE---VLIVLGLLSTLVGGWGG 168
Cdd:PRK02504  215 FVIAGIAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALAIRLlvtafPSFDEQwklLFTALAILSMVLGNVVA 294

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 169 LNQTQLRKILAYSSIAHLGWML--LVV--QFSPSLTLLALGTYLVMTLSTFM---IFSFNKAT-TVNALATSWAKAPLIT 240
Cdd:PRK02504  295 LAQTSMKRMLAYSSIGQAGFVMigLVAgtEAGYASMVFYLLAYLFMNLGAFAcviLFSLRTGTdQISDYAGLYQKDPLLT 374

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1799624465 241 SIAPLLLLSLGGLPPMTGFLPKWLILQELTKQQLPLTAVLAAFTALLSLYFYLRLSYAM 299
Cdd:PRK02504  375 LGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRVIKMM 433
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-191 5.42e-08

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 54.32  E-value: 5.42e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  49 HPRAIEAATKYFLTQATAAATLLFASVTNAWLTGQW--DI-QLMTHPLPTT-------LIILALALKIGLAPLHTWLPE- 117
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIaELAAAPLPLTaqlllflAFFIAFAVKVPMFPFHTWLPDa 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 118 ----------VLQGLDLTTG----------LVLSTWQKLAPFallvqiptphpevLIVLGLLSTLVGGWGGLNQTQLRKI 177
Cdd:COG1008   236 hveaptagsvLLAGVLLKMGgygllrfalpLFPEASAYFAPL-------------LAALGVIGIIYGALVALAQTDLKRL 302

                         170
                  ....*....|....
gi 1799624465 178 LAYSSIAHLGWMLL 191
Cdd:COG1008   303 IAYSSVSHMGFVLL 316
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 97-203 7.58e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 53.73  E-value: 7.58e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  97 LIILALALKIGLAPLHTWLPEVLQGLDLTTGLVLS-TWQKLAPFAL---LVQIPTPHP-------EVLIVLGLLSTLVGG 165
Cdd:PRK08375  207 FVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSgLVTKVAVYALiriYFTVFGGDFrfalglgWLLAVLALLSMLVGS 286

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1799624465 166 WGGLNQTQLRKILAYSSIAHLGWMLLVVQFSPSLTLLA 203
Cdd:PRK08375  287 LAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAA 324
ndhB CHL00049
NADH dehydrogenase subunit 2
 97-295 8.16e-08

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 53.47  E-value: 8.16e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  97 LIILALALKIGLAPLHTWLPEVLQGLDLTTGLVLSTWQKLAPFALLVQI-----PTPHPE---VLIVLGLLSTLVGGWGG 168
Cdd:CHL00049  219 FITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIfdipfYFSSNEwhlLLEILAILSMILGNLIA 298

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 169 LNQTQLRKILAYSSIAHLGWMLL-VVQFSPSLTLLALGTYLV----MTLSTF---MIFSFNKAT-TVNALATSWAKAPLI 239
Cdd:CHL00049  299 ITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNDGYASMITYMLfyifMNLGTFaciVLFGLRTGTdNIRDYAGLYTKDPFL 378

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1799624465 240 TSIAPLLLLSLGGLPPMTGFLPKWLILQELTKQQLPLTAVLAAFTALLSLYFYLRL 295
Cdd:CHL00049  379 ALSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 97-301 2.84e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 51.92  E-value: 2.84e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  97 LIILALALKIGLAPLHTWLPE-----------VLQGLDLTTGL--------VLSTWQKLAPFALLVQIPTPHpEVLIVLG 157
Cdd:PRK08668  201 FLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGAygfllvlyVLPGTKLFSEFGTYRGVPLFN-YILAWLG 279

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 158 LLSTLVGGWGGLNQTQLRKILAYSSIAHLGWMLLVvqfspsltlLALGTYLVMTLSTFMIFSFNKATTVNALATSWA--- 234
Cdd:PRK08668  280 NISIIVGTLMAILQEDIKKLIAYSSVANGGYILVG---------LGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAViyr 350

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 235 --------------KAPLITSIAPLLLLSLGGLPPMTGFLPKWLILQELTKQQLPLTAVLAAFTALLSLYFYLRLSYAMT 300
Cdd:PRK08668  351 tgttkisemgglieKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLAGVF 430


                  .
gi 1799624465 301 L 301
Cdd:PRK08668  431 L 431
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-191 3.22e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.77  E-value: 3.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  20 TATSSHWLLAWMGLEINTLAIIPLMTRHHHPRAIEAATKYF----------LTQATAAATLLFASVTNAWLTGQW-DIQL 88
Cdd:PRK06458  124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIiicsvgvafaLFGTILVYANAATVMGDGEMAILWtELLK 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  89 MTHPLPTTLIILALAL-------KIGLAPLHTWLPE-----------VLQGLDLTTGL-VLSTWQKLAPFALLVQIPTPh 149
Cdd:PRK06458  204 HASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALyAVLRYYILIDAAIGSDFPGR- 282

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1799624465 150 peVLIVLGLLSTLVGGWGGLNQTQLRKILAYSSIAHLGWMLL 191
Cdd:PRK06458  283 --LLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
96-202 8.85e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 47.40  E-value: 8.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  96 TLIILALALKIGLAPLHTWLPEVLQGLDLTTGLVLS-TWQKLAPFALLVQIPTPHPEV-------LIVLGLLSTLVGGWG 167
Cdd:PRK07363  209 TGLLLGFGIKIPLVPLHTWLPDAYTEASPAVAILLGgVLAKLGTYGLLRFGLQLFPQTwslvapgLAIIGTISVIYGALS 288

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1799624465 168 GLNQTQLRKILAYSSIAHLGWMLLVVQFSPSLTLL 202
Cdd:PRK07363  289 AIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLL 323
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 96-191 1.40e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 46.67  E-value: 1.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  96 TLIILALALKIGLAPLHTWLPE-----------VLQGLDLTTGLVlstwQKLAPFALLVQ--IPTPHPEVLIVLGLLSTL 162
Cdd:PRK08676  210 LFIFIGFLAKSGLVPFHTWLPAayakapsvvsaLLSGTVLNIGIY----GILRLSALLRQsgAAEQFSNVLIGLGIFSIA 285

                          90       100
                  ....*....|....*....|....*....
gi 1799624465 163 VGGWGGLNQTQLRKILAYSSIAHLGWMLL 191
Cdd:PRK08676  286 VAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-191 1.41e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 46.73  E-value: 1.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  50 PRAIEAATKYFL-TQA---TAAATLLFASVTNAWLTGQWDI-QLMTHPLPT---TLIILAL----ALKIGLAPLHTWLPE 117
Cdd:PRK05846  157 KNRIYAATKFFLyTLLgslLMLVAIIYLVVVYYNATGTFDIaDLLNLPLPPgvqYWLFLAFfiafAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 118 VLQ-----GLDLTTGLVLstwqKLAPFALL----------VQIPTPhpeVLIVLGLLSTLVGGWGGLNQTQLRKILAYSS 182
Cdd:PRK05846  237 AHVqaptaGSVLLAGILL----KMGAYGLLrfslplfpdaSHEFAP---IIITLGVIAIIYGALVALAQTDIKKLIAYSS 309


                  ....*....
gi 1799624465 183 IAHLGWMLL 191
Cdd:PRK05846  310 ISHMGFVTL 318
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 290-324 3.11e-05

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 41.09  E-value: 3.11e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1799624465 290 YFYLRLSYAMTLTLSPNSVSGTPIWRLASGKITMP 324
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLL 35
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-206 3.41e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 45.47  E-value: 3.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  33 LEINTLAIIPLMT-RHHHPRAIEAATKYFLTQATAAATLLfasVTNAWLTGQWD------IQLMTHPLPTTLIILALAL- 104
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVL---LGIALLYGQYGtlnmayLAVKMSENPTVVAKIALALf 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 105 ------KIGLAPLHTWLPEVLQGL--DLTTGLVLSTWQKL-APFALLVQIPTPH------PEVLIVLGLLSTLVGGWGGL 169
Cdd:PRK08376  227 iaglamKSGAVPVHMWLPDAYPAApsSISAMLLVIKQAGLyALARVLFSIYGPAinlatvGWVIIILGCLTMFVGVAMAV 306

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1799624465 170 NQTQLRKILAYSSIAHLGWMLLVVqfspSLTLLALGT 206
Cdd:PRK08376  307 VQKDVKRLLAYHSVSQIGYMLLGL----GVGLAALGD 339
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 81-203 5.99e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 44.91  E-value: 5.99e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  81 TGQWDI-QLMTHPLPTTLIILALAL-------KIGLAPLHTWLPE-----------------VLQGLDLTTglvlstwqK 135
Cdd:PRK12644  184 AGTYRLsELLADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGamaaptpvsaylhaaamVKAGIYLVA--------R 255

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1799624465 136 LAP-FAllvQIPTPHPeVLIVLGLLSTLVGGWGGLNQTQLRKILAYSSIAHLGWMLLVVQFSPSLTLLA 203
Cdd:PRK12644  256 LAPgFA---DVPVWRP-TVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALA 320
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 111-307 8.18e-05

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 44.30  E-value: 8.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 111 LHTWLPEVLQGLD-----------LTTGLVL----STWQKLAPFALLVqiptphpevLIVLGLLSTLVGGWGGLNQTQLR 175
Cdd:MTH00020  229 LHTWLPDAMEGPTpvsalihaatmVTAGVFLlirsSPLFEQAPLALII---------VTIVGSLTVFFAATVGLVQNDLK 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 176 KILAYSSIAHLGWMLLVVQFSpsltLLALGTYLVMTLSTFMIFSFNKATTV-NALATSW---------AKAPLITSIAPL 245
Cdd:MTH00020  300 KVIAYSTCSQLGYMVVACGLS----HYSISLFHLMNHAFFKALLFLSAGSViHALSDEQdmrkmggliSFLPLTYIFFLI 375

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1799624465 246 LLLSLGGLPPMTGFLPKWLILqELTKQQLPLTAV--LAAFTALLSLYFYLRLSYaMTLTLSPNS 307
Cdd:MTH00020  376 GSLSLMGFPYLTGFYSKDLIL-ELAFGQYYLIFAywLGCFSALLTAFYSIRLIY-LTFLSNTNL 437
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 99-191 8.96e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 44.25  E-value: 8.96e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  99 ILALALKIGLAPLHTWLPE-----------VLQGLDLttglvlstwqKLAPFALL---VQI-PTPH---PEVLIVLGLLS 160
Cdd:PRK12561  192 LIAFGVKLPIFPLHTWLPDahgeasapvsmILAGVLL----------KMGGYALIrfnVQMlPDAHvyfAPALAILGVVN 261

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1799624465 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMLL 191
Cdd:PRK12561  262 IIYGALNAFAQDNVKRRLAYSSVSHMGFVLL 292
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 85-302 1.31e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 43.57  E-value: 1.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  85 DIQLMTHPLPTTLII--------LALALKIGLAPLHTWLPEVLQGLDLTTGLVLS-TWQKLAPF-----------ALLVQ 144
Cdd:PRK12662  194 DMFLIIQDLPTNRAIqigvlfimVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgTSTKVMIYliirivydvfkANFVF 273

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 145 IPTPHPEVLIVLGLLSTLVGGWGGLNQTQLRKILAYSSIAHLGWMLLVVQFSPSLTLLALGTYLV----MTLSTFMI--- 217
Cdd:PRK12662  274 TTLPFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnhsiVKSALFMVsgs 353

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 218 --FSFNKaTTVNALATSWAKAPLITSIAPLLLLSLGGLPPMTGFLPKWLILQELTKQQLPLTAVLAAFTALLSLYFYLRL 295
Cdd:PRK12662  354 isYHFGT-TKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432


                  ....*..
gi 1799624465 296 SYAMTLT 302
Cdd:PRK12662  433 VEALYFE 439
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
50-190 2.91e-04

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 42.57  E-value: 2.91e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  50 PRAIEAATKYFLTQATAAATLLFASVTNAWLTGQWDIQLM--THPLPTTLIILALALKIGLAPLHTWLPEVLQGLDLTTG 127
Cdd:PRK12668  139 KAAVRAGFRYLLVHVLGGVLLLAGILLHYAETGSFAFGAIagLGGTAAWLILIGFGVNAAFPPLHAWLPDAYPEATVTGS 218

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1799624465 128 LVLSTW-QKLAPFALLVQIPTphPEVLIVLGLLSTLVGGWGGLNQTQLRKILAYSSIAHLGWML 190
Cdd:PRK12668  219 VFLSAFtTKTAVYALARAFPG--TELLIYIGAAMAVYGVFFALLENDLRRLLSYHIVSQVGYMV 280
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 80-213 3.59e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 42.41  E-value: 3.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  80 LTGQWDIQLMTHP-----LPTTLIILALALKIGLAPLHTWLPEVLQGLD-----LTTGLVLstwqKLAPFAL---LVQIP 146
Cdd:PRK08667  188 QTGSFELSPLGASagilsLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPsnvsaLMSGVML----KVAVYGLvrfLMDVL 263

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1799624465 147 TPHPE---VLIVLGLLSTLVGGWGGLNQTQLRKILAYSSIAHLG--------WMLLVVQFSPSLTLLALGTYLVMTLS 213
Cdd:PRK08667  264 SPELWwgvLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVYGLDTLALLALGGALFHSLN 341
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 152-193 4.19e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 42.06  E-value: 4.19e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1799624465 152 VLIVLGLLSTLVGGWGGLNQTQLRKILAYSSIAHLGWMLLVV 193
Cdd:COG1009   277 VVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-191 4.60e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 41.86  E-value: 4.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  33 LEINTLAIIPLMTRHHHPRAIEAATKYFLTQATAAATLLFASVTNAWLTGQWDIQ--LMTHPLPTTLIILALALKIGLAP 110
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSglATADPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 111 LHTWLPEVLQGLDLTTGLVLS-TWQKLAPFALL-VQIPTPHPEVLI-VLGLLSTLVGGWGGLNQTQLRKILAYSSIAHLG 187
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSgVVVKAGVFPLVrCALDVPGLDLIVrIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282


                  ....
gi 1799624465 188 WMLL 191
Cdd:PRK07234  283 FILA 286
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-265 8.93e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 40.84  E-value: 8.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  55 AATKYFLTQATAAATLLFASVTNAWLTGQWDI---QLMTHPLPTT-------LIILALALKIGLAPLHTWLPE------- 117
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGASSFdyePLRSHTLPLStqllllaPILVGFGIKIPLVPFHTWLPDahveast 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 118 ----VLQG--LDLTT--------GLVLSTWQKLAPFallvqiptphpevLIVLGLLSTLVGGWGGLNQTQLRKILAYSSI 183
Cdd:PRK06473  238 pvsvLLAGvlLKLGTygllrfgvGLFPEAWVYLAPW-------------LATWAVVSVLYGASCAIAQKDMKKMVAYSSI 304

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 184 AHLGWMLLVVQFSPSLTLLALGTYLVM-TLSTFMIF-----SFNKATTVN-----ALATSWAKAPLITSIAPLLLLSLGG 252
Cdd:PRK06473  305 GHMGYILLAAAAATPLSILAAVFQMIShGLISALLFllvgvVYKKTGSRDvdvlrGLLNPERGLPITGSLMILGVMASAG 384

                         250
                  ....*....|...
gi 1799624465 253 LPPMTGFLPKWLI 265
Cdd:PRK06473  385 IPGMVGFIAEFLV 397
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 98-187 1.95e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 39.90  E-value: 1.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  98 IILALALKIGLAPLHTWLPE-----------VLQGLDLTTG---LVLSTW-------QKLAPfallvqiptphpeVLIVL 156
Cdd:MTH00226  236 IFLAMAVKIPIFPFHIWLPKahveapvagsvLLAGILLKLGgygLVRLSWpilplgaQNLAP-------------AVIAM 302

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1799624465 157 GLLSTLVGGWGGLNQTQLRKILAYSSIAHLG 187
Cdd:MTH00226  303 GIVGIVYGSFATCRQIDVKRLVAYSSVAHMG 333
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 111-193 2.30e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 39.94  E-value: 2.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 111 LHTWLPEVLQGLDLTTGLV-LSTWQKLAPFALLVQIP----TPHPEVLI-VLGLLSTLVGGWGGLNQTQLRKILAYSSIA 184
Cdd:MTH00032  244 LHTWLPDAMEGPTPVSALIhAATMVTAGVFLMIRSFPlfekAPLTLLIItIFGALTAFFAATVGLVQNDLKKVIAYSTCS 323


                  ....*....
gi 1799624465 185 HLGWMLLVV 193
Cdd:MTH00032  324 QLGYMVLII 332
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 97-227 2.50e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 39.08  E-value: 2.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  97 LIILALALKIGLAPLHTWLPEVLQGLDLTTGLVLSTWQKLAPFALLVQIPTPHPEVLIVLGLLSTLVGGWgglNQTQLRK 176
Cdd:MTH00091   62 FQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQMF---LLKSYKN 138

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1799624465 177 ILAYSSIAHLGWMLLVVQFSPSLTLLALGTYLVMTLstFMIFSFNKATTVN 227
Cdd:MTH00091  139 LLILSSTESFNWLILSFFFSFFNVFFLFFYYFLLML--FLIPKFNNVNKLN 187
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 153-316 2.56e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 39.41  E-value: 2.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 153 LIVLGLLSTLVGGWGGLNQTQLRKILAYSSIAHLGWMLLVVQFSPSLTLLALGTYLV--------MTLSTFMIFSFNKAT 224
Cdd:PRK06589  283 LIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVshsfakicLFYSMGSIYSLKKED 362

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 225 TVNALATSWAKAPLITSIAPLLLLSLGGLPPMTGFLPKWLILQELTKQQLP-----LTAVLAAFTALLSLYFYLRLSYAM 299
Cdd:PRK06589  363 QVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPwlsiiVMLVVIASSILSALYLLKILSSIY 442

                         170
                  ....*....|....*...
gi 1799624465 300 TLTLSPNS-VSGTPIWRL 316
Cdd:PRK06589  443 KPSLSENSfITKSLPYLM 460
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 100-210 2.97e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 39.26  E-value: 2.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465 100 LALALKIGLAPLHTWLPE-----------VLQGLDLTTG---LVLSTWQKLAP----FALLVQIptphpevlivLGLLST 161
Cdd:MTH00217  214 LSLAIKIPKIPFHIWLPQahveapvagsvILAGVLLKLGgygFIRFSWPLLPEaseyFSPLIQT----------LSLLAI 283

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1799624465 162 LVGGWGGLNQTQLRKILAYSSIAHLGWMLLVVqFSPSLTLLALGTYLVM 210
Cdd:MTH00217  284 IYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGI-FSHTIQGLVAAIFLML 331
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 99-191 3.09e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 39.30  E-value: 3.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  99 ILALALKIGLAPLHTWLPEVLQGLD-----LTTGLVLstwqKLAPFALLV----QIPTPHPE---VLIVLGLLSTLVGGW 166
Cdd:PRK02546  220 LIAYGVKLPIVPLHTWLPDAHGEATapvhmLLAGILL----KMGGYALLRmnagMLPDAHAQfapLLIVLGVVNIIYAAL 295

                          90       100
                  ....*....|....*....|....*
gi 1799624465 167 GGLNQTQLRKILAYSSIAHLGWMLL 191
Cdd:PRK02546  296 TSFAQRNLKRKIAYSSISHMGFVLI 320
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 96-219 5.60e-03

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 38.59  E-value: 5.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  96 TLIILALALKIGLAPLHTWLPEVLQGLDLTTGLVLSTW-QKLAPFAL-----LVQIPTPHPEVL---IVLGLLSTLVGGW 166
Cdd:PRK08377  210 ALLIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFvVKAGLYAMarilyLMQNANGWSSVLklvIIMATLTVFFAEL 289

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1799624465 167 GGLNQTQLRKILAYSSIAHLGWMLLVvqfspsltlLALGTYLVMTLSTFMIFS 219
Cdd:PRK08377  290 SALRQKNVKRMIAYSSIGQVGMIALA---------LALGTQAGVDAGVFHMIN 333
PRK12650 PRK12650
DUF4040 family protein;
152-213 8.13e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 38.10  E-value: 8.13e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1799624465 152 VLIVLGLLSTLVGGWGGLNQTQLRKILAYSSIAHLGWMLLVVQFSpslTLLALGTYLVMTLS 213
Cdd:PRK12650  274 LLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVG---TPFALTAAVVHTLA 332
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 93-191 9.16e-03

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 38.03  E-value: 9.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799624465  93 LPTTLIILALALKIGLA------PLHTWLPEVLQGLD-----------LTTGLVL----STWQKLAPFALLvqiptphpe 151
Cdd:TIGR01974 208 FFSALTLICLLLFIGAMgksaqlPLHTWLPDAMEGPTpvsalihaatmVTAGVYLvartSPLFELSPTALY--------- 278

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1799624465 152 VLIVLGLLSTLVGGWGGLNQTQLRKILAYSSIAHLGWMLL 191
Cdd:TIGR01974 279 LVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFL 318
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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