Protein RnfH [Rhodospirillaceae bacterium LM-1]
RnfH family protein( domain architecture ID 10508429)
RnfH family protein, a member of the ubiquitin superfamily, is involved in transporting electrons for various reductive reactions such as nitrogen fixation and may also play a role in the SmpB-tmRNA-based tagging and degradation system of bacteria
List of domain hits
Name | Accession | Description | Interval | E-value | |||
Ub-RnfH | pfam03658 | RnfH family Ubiquitin; A member of the RnfH family of the ubiquitin superfamily. Members of ... |
1-83 | 2.50e-47 | |||
RnfH family Ubiquitin; A member of the RnfH family of the ubiquitin superfamily. Members of this family strongly co-occur in two distinct gene neighborhood contexts. In one it is associated with a START domain protein, a membrane protein SmpA and the transfer mRNA binding protein SmpB. This association suggests a possible role in the SmpB-tmRNA-based tagging and degadation system of bacteria, which is interesting given that other members of the ubiquitin system are analogously involved in protein-tagging and degradation across eukaryotes and various prokaryotes. The second context in which the RnfH genes are present is in a membrane associated complex involved in transporting electrons for various reductive reactions such as nitrogen fixation. : Pssm-ID: 427429 Cd Length: 83 Bit Score: 145.65 E-value: 2.50e-47
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Name | Accession | Description | Interval | E-value | |||
Ub-RnfH | pfam03658 | RnfH family Ubiquitin; A member of the RnfH family of the ubiquitin superfamily. Members of ... |
1-83 | 2.50e-47 | |||
RnfH family Ubiquitin; A member of the RnfH family of the ubiquitin superfamily. Members of this family strongly co-occur in two distinct gene neighborhood contexts. In one it is associated with a START domain protein, a membrane protein SmpA and the transfer mRNA binding protein SmpB. This association suggests a possible role in the SmpB-tmRNA-based tagging and degadation system of bacteria, which is interesting given that other members of the ubiquitin system are analogously involved in protein-tagging and degradation across eukaryotes and various prokaryotes. The second context in which the RnfH genes are present is in a membrane associated complex involved in transporting electrons for various reductive reactions such as nitrogen fixation. Pssm-ID: 427429 Cd Length: 83 Bit Score: 145.65 E-value: 2.50e-47
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PasI | COG2914 | Putative antitoxin component PasI (RatB) of the RatAB toxin-antitoxin module, ubiquitin-RnfH ... |
1-84 | 4.92e-47 | |||
Putative antitoxin component PasI (RatB) of the RatAB toxin-antitoxin module, ubiquitin-RnfH superfamily [Defense mechanisms]; Pssm-ID: 442158 Cd Length: 92 Bit Score: 144.88 E-value: 4.92e-47
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PRK01777 | PRK01777 | RnfH family protein; |
1-92 | 1.79e-29 | |||
RnfH family protein; Pssm-ID: 234982 Cd Length: 95 Bit Score: 100.82 E-value: 1.79e-29
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Name | Accession | Description | Interval | E-value | |||
Ub-RnfH | pfam03658 | RnfH family Ubiquitin; A member of the RnfH family of the ubiquitin superfamily. Members of ... |
1-83 | 2.50e-47 | |||
RnfH family Ubiquitin; A member of the RnfH family of the ubiquitin superfamily. Members of this family strongly co-occur in two distinct gene neighborhood contexts. In one it is associated with a START domain protein, a membrane protein SmpA and the transfer mRNA binding protein SmpB. This association suggests a possible role in the SmpB-tmRNA-based tagging and degadation system of bacteria, which is interesting given that other members of the ubiquitin system are analogously involved in protein-tagging and degradation across eukaryotes and various prokaryotes. The second context in which the RnfH genes are present is in a membrane associated complex involved in transporting electrons for various reductive reactions such as nitrogen fixation. Pssm-ID: 427429 Cd Length: 83 Bit Score: 145.65 E-value: 2.50e-47
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PasI | COG2914 | Putative antitoxin component PasI (RatB) of the RatAB toxin-antitoxin module, ubiquitin-RnfH ... |
1-84 | 4.92e-47 | |||
Putative antitoxin component PasI (RatB) of the RatAB toxin-antitoxin module, ubiquitin-RnfH superfamily [Defense mechanisms]; Pssm-ID: 442158 Cd Length: 92 Bit Score: 144.88 E-value: 4.92e-47
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PRK01777 | PRK01777 | RnfH family protein; |
1-92 | 1.79e-29 | |||
RnfH family protein; Pssm-ID: 234982 Cd Length: 95 Bit Score: 100.82 E-value: 1.79e-29
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Ub-Mut7C | pfam14451 | Mut7-C ubiquitin; This member of the ubiquitin superfamily is found at the N-terminus of ... |
10-74 | 3.32e-03 | |||
Mut7-C ubiquitin; This member of the ubiquitin superfamily is found at the N-terminus of Mut7-C like RNAses, suggestive of an RNA-binding role. Pssm-ID: 433962 Cd Length: 81 Bit Score: 33.47 E-value: 3.32e-03
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Blast search parameters | ||||
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