|
Name |
Accession |
Description |
Interval |
E-value |
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
63-336 |
9.40e-141 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 399.71 E-value: 9.40e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 63 VNEQFQESLFEELVLLDIGYHAATKICDAIVQELKLQRVSDPQLIQEIIVDKLIVYYIQDKLFETDL--TVEANKTNVYL 140
Cdd:TIGR00064 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNTDLelIVEENKPNVIL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 141 FVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAVAQLAEWAQRIGCDIVLPNSKEETPAVIFRGVQQGIQNEYD 220
Cdd:TIGR00064 82 FVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNID 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 221 FVLCDTSGRLQNKTNLMNELKKIYQIVQKVSSAKPQETLLVLDGTTGQSGLAQAKVFNEFTELTGIILTKMDSSSKGGII 300
Cdd:TIGR00064 162 VVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGII 241
|
250 260 270
....*....|....*....|....*....|....*.
gi 1797684557 301 LAIKDLFNLPVKLIGFGETTADLAAFDLEQYVLGLT 336
Cdd:TIGR00064 242 LSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
10-339 |
3.34e-137 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 392.54 E-value: 3.34e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 10 KFKPKKKLvdqvqqavQEKSFFQanqkSYYQGLNKSANSFANTINKLAAnYVTVNEQFQESLFEELVLLDIGYHAATKIC 89
Cdd:PRK10416 4 WLKKKKKE--------KKEGWFE----RLKKGLSKTRENFGEGINGLFA-KKKIDEDLLEELEELLIEADVGVETTEEII 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 90 DAIVQELKLQRVSDPQLIQEIIVDKLIVYYIQDklfETDLTVEANKTNVYLFVGVNGVGKTTSLAKLADQLTKQNKRVLM 169
Cdd:PRK10416 71 EELRERVKRKNLKDPEELKELLKEELAEILEPV---EKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 170 VAGDTFRAGAVAQLAEWAQRIGCDIVLPNSKEETPAVIFRGVQQGIQNEYDFVLCDTSGRLQNKTNLMNELKKIYQIVQK 249
Cdd:PRK10416 148 AAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKK 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 250 VSSAKPQETLLVLDGTTGQSGLAQAKVFNEFTELTGIILTKMDSSSKGGIILAIKDLFNLPVKLIGFGETTADLAAFDLE 329
Cdd:PRK10416 228 ADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAE 307
|
330
....*....|
gi 1797684557 330 QYVLGLTKNL 339
Cdd:PRK10416 308 EFVDALLGGE 317
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
36-335 |
4.06e-129 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 371.28 E-value: 4.06e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 36 KSYYQGLNKSANSFANTINKLAANYVTVNEQFQESLFEELVLLDIGYHAATKICDAIVQELKLQRVSDPQLIQEIIVDKL 115
Cdd:COG0552 3 ERLKEGLSKTRSGLGEKLKSLFSGKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKEEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 116 IVYYIQDklfETDLTVEANKTNVYLFVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAVAQLAEWAQRIGCDIV 195
Cdd:COG0552 83 LEILDPV---DKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 196 LPNSKEETPAVIFRGVQQGIQNEYDFVLCDTSGRLQNKTNLMNELKKIYQIVQKVSSAKPQETLLVLDGTTGQSGLAQAK 275
Cdd:COG0552 160 AQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQAK 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 276 VFNEFTELTGIILTKMDSSSKGGIILAIKDLFNLPVKLIGFGETTADLAAFDLEQYVLGL 335
Cdd:COG0552 240 VFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDAL 299
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
137-335 |
2.00e-91 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 271.75 E-value: 2.00e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 137 NVYLFVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAVAQLAEWAQRIGCDIVLPNSKEETPAVIFRGVQQGIQ 216
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 217 NEYDFVLCDTSGRLQNKTNLMNELKKIYQIVQKVSSAKPQETLLVLDGTTGQSGLAQAKVFNEFTELTGIILTKMDSSSK 296
Cdd:cd17874 81 RGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 1797684557 297 GGIILAIKDLFNLPVKLIGFGETTADLAAFDLEQYVLGL 335
Cdd:cd17874 161 GGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
137-335 |
6.53e-89 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 265.17 E-value: 6.53e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 137 NVYLFVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAVAQLAEWAQRIGCDIVLPNSKEETPAVIFRGVQQGIQ 216
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 217 NEYDFVLCDTSGRLQNKTNLMNELKKIYQIVqkvssaKPQETLLVLDGTTGQSGLAQAKVFNEFTELTGIILTKMDSSSK 296
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVV------APDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 1797684557 297 GGIILAIKDLFNLPVKLIGFGETTADLAAFDLEQYVLGL 335
Cdd:pfam00448 155 GGAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
137-332 |
2.35e-82 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 248.48 E-value: 2.35e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 137 NVYLFVGVNGVGKTTSLAKLADQLTKQN-KRVLMVAGDTFRAGAVAQLAEWAQRIGCDIVLPNSKEETPAVIFRGVQQGI 215
Cdd:smart00962 2 GVILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELAK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 216 QNEYDFVLCDTSGRLQNKTNLMNELKKIYQIVqkvssaKPQETLLVLDGTTGQSGLAQAKVFNEFTELTGIILTKMDSSS 295
Cdd:smart00962 82 ARGYDVVLIDTAGRLHNDENLMEELKKIKRVI------KPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTA 155
|
170 180 190
....*....|....*....|....*....|....*..
gi 1797684557 296 KGGIILAIKDLFNLPVKLIGFGETTADLAAFDLEQYV 332
Cdd:smart00962 156 KGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFV 192
|
|
| ParA_partition |
NF041546 |
ParA family partition ATPase; |
146-230 |
7.58e-04 |
|
ParA family partition ATPase;
Pssm-ID: 469431 [Multi-domain] Cd Length: 202 Bit Score: 40.23 E-value: 7.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 146 GVGKTTSLAKLADQLTKQNKRVLMVAGDTfragavaQ--LAEWAQRigcdivlpnsKEETPAVIFRGVQ--------QGI 215
Cdd:NF041546 10 GVGKTTLATHLAAALARRGYRVLLVDADP-------QgsALDWAAA----------REDERPFPVVGLArptlhrelPSL 72
|
90
....*....|....*
gi 1797684557 216 QNEYDFVLCDTSGRL 230
Cdd:NF041546 73 ARDYDFVVIDGPPRA 87
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
63-336 |
9.40e-141 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 399.71 E-value: 9.40e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 63 VNEQFQESLFEELVLLDIGYHAATKICDAIVQELKLQRVSDPQLIQEIIVDKLIVYYIQDKLFETDL--TVEANKTNVYL 140
Cdd:TIGR00064 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNTDLelIVEENKPNVIL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 141 FVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAVAQLAEWAQRIGCDIVLPNSKEETPAVIFRGVQQGIQNEYD 220
Cdd:TIGR00064 82 FVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNID 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 221 FVLCDTSGRLQNKTNLMNELKKIYQIVQKVSSAKPQETLLVLDGTTGQSGLAQAKVFNEFTELTGIILTKMDSSSKGGII 300
Cdd:TIGR00064 162 VVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGII 241
|
250 260 270
....*....|....*....|....*....|....*.
gi 1797684557 301 LAIKDLFNLPVKLIGFGETTADLAAFDLEQYVLGLT 336
Cdd:TIGR00064 242 LSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
10-339 |
3.34e-137 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 392.54 E-value: 3.34e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 10 KFKPKKKLvdqvqqavQEKSFFQanqkSYYQGLNKSANSFANTINKLAAnYVTVNEQFQESLFEELVLLDIGYHAATKIC 89
Cdd:PRK10416 4 WLKKKKKE--------KKEGWFE----RLKKGLSKTRENFGEGINGLFA-KKKIDEDLLEELEELLIEADVGVETTEEII 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 90 DAIVQELKLQRVSDPQLIQEIIVDKLIVYYIQDklfETDLTVEANKTNVYLFVGVNGVGKTTSLAKLADQLTKQNKRVLM 169
Cdd:PRK10416 71 EELRERVKRKNLKDPEELKELLKEELAEILEPV---EKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 170 VAGDTFRAGAVAQLAEWAQRIGCDIVLPNSKEETPAVIFRGVQQGIQNEYDFVLCDTSGRLQNKTNLMNELKKIYQIVQK 249
Cdd:PRK10416 148 AAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKK 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 250 VSSAKPQETLLVLDGTTGQSGLAQAKVFNEFTELTGIILTKMDSSSKGGIILAIKDLFNLPVKLIGFGETTADLAAFDLE 329
Cdd:PRK10416 228 ADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAE 307
|
330
....*....|
gi 1797684557 330 QYVLGLTKNL 339
Cdd:PRK10416 308 EFVDALLGGE 317
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
36-335 |
4.06e-129 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 371.28 E-value: 4.06e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 36 KSYYQGLNKSANSFANTINKLAANYVTVNEQFQESLFEELVLLDIGYHAATKICDAIVQELKLQRVSDPQLIQEIIVDKL 115
Cdd:COG0552 3 ERLKEGLSKTRSGLGEKLKSLFSGKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKEEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 116 IVYYIQDklfETDLTVEANKTNVYLFVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAVAQLAEWAQRIGCDIV 195
Cdd:COG0552 83 LEILDPV---DKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 196 LPNSKEETPAVIFRGVQQGIQNEYDFVLCDTSGRLQNKTNLMNELKKIYQIVQKVSSAKPQETLLVLDGTTGQSGLAQAK 275
Cdd:COG0552 160 AQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQAK 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 276 VFNEFTELTGIILTKMDSSSKGGIILAIKDLFNLPVKLIGFGETTADLAAFDLEQYVLGL 335
Cdd:COG0552 240 VFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDAL 299
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
137-335 |
2.00e-91 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 271.75 E-value: 2.00e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 137 NVYLFVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAVAQLAEWAQRIGCDIVLPNSKEETPAVIFRGVQQGIQ 216
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 217 NEYDFVLCDTSGRLQNKTNLMNELKKIYQIVQKVSSAKPQETLLVLDGTTGQSGLAQAKVFNEFTELTGIILTKMDSSSK 296
Cdd:cd17874 81 RGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 1797684557 297 GGIILAIKDLFNLPVKLIGFGETTADLAAFDLEQYVLGL 335
Cdd:cd17874 161 GGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
137-335 |
6.53e-89 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 265.17 E-value: 6.53e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 137 NVYLFVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAVAQLAEWAQRIGCDIVLPNSKEETPAVIFRGVQQGIQ 216
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 217 NEYDFVLCDTSGRLQNKTNLMNELKKIYQIVqkvssaKPQETLLVLDGTTGQSGLAQAKVFNEFTELTGIILTKMDSSSK 296
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVV------APDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 1797684557 297 GGIILAIKDLFNLPVKLIGFGETTADLAAFDLEQYVLGL 335
Cdd:pfam00448 155 GGAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
137-332 |
2.35e-82 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 248.48 E-value: 2.35e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 137 NVYLFVGVNGVGKTTSLAKLADQLTKQN-KRVLMVAGDTFRAGAVAQLAEWAQRIGCDIVLPNSKEETPAVIFRGVQQGI 215
Cdd:smart00962 2 GVILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELAK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 216 QNEYDFVLCDTSGRLQNKTNLMNELKKIYQIVqkvssaKPQETLLVLDGTTGQSGLAQAKVFNEFTELTGIILTKMDSSS 295
Cdd:smart00962 82 ARGYDVVLIDTAGRLHNDENLMEELKKIKRVI------KPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTA 155
|
170 180 190
....*....|....*....|....*....|....*..
gi 1797684557 296 KGGIILAIKDLFNLPVKLIGFGETTADLAAFDLEQYV 332
Cdd:smart00962 156 KGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFV 192
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
126-327 |
1.71e-60 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 199.86 E-value: 1.71e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 126 ETDLTVEANKTNVYLFVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAVAQLAEWAQRIGCDiVLPNSKEETPA 205
Cdd:COG0541 90 NEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVP-VFPEEDGKDPV 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 206 VIFR-GVQQGIQNEYDFVLCDTSGRLQNKTNLMNELKKIYQIVqkvssaKPQETLLVLDGTTGQSGLAQAKVFNEFTELT 284
Cdd:COG0541 169 DIAKrALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAV------NPDETLLVVDAMTGQDAVNVAKAFNEALGLT 242
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1797684557 285 GIILTKMDSSSKGGIILAIKDLFNLPVKLIGFGETTADLAAFD 327
Cdd:COG0541 243 GVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFH 285
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
137-332 |
3.12e-59 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 189.12 E-value: 3.12e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 137 NVYLFVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAVAQLAEWAQRIGCDIVLPNSKEETPAVIFRGVQQGIQ 216
Cdd:cd03115 1 NVILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 217 NEYDFVLCDTSGRLQNKTNLMNELKKIYQIVQkvssakPQETLLVLDGTTGQSGLAQAKVFNEFTELTGIILTKMDSSSK 296
Cdd:cd03115 81 EGYDVLLVDTAGRLQKDEPLMEELKKVKEVES------PDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAK 154
|
170 180 190
....*....|....*....|....*....|....*.
gi 1797684557 297 GGIILAIKDLFNLPVKLIGFGETTADLAAFDLEQYV 332
Cdd:cd03115 155 GGAALSIVAETKKPIKFIGVGEKPEDLEPFDPERFV 190
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
2-332 |
8.50e-58 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 190.18 E-value: 8.50e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 2 SFIHKLIQKFKPKKKLVDQVQQAVQEKSFFQANQKSyyQGLNKSANSFANTinklaanyvtvNEQFQESLFE-ELVLL-- 78
Cdd:PRK14974 11 KFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEK--PGFFDKAKITEIK-----------EKDIEDLLEElELELLes 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 79 DIGYHAATKICDAIVQELKLQRVSDPQLIQEIIVDKLI--VYYI--QDKLFETDLTVEAN-KTNVYLFVGVNGVGKTTSL 153
Cdd:PRK14974 78 DVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKeaLLEVlsVGDLFDLIEEIKSKgKPVVIVFVGVNGTGKTTTI 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 154 AKLADQLTKQNKRVLMVAGDTFRAGAVAQLAEWAQRIGCDIVLPNSKEETPAVIFRGVQQGIQNEYDFVLCDTSGRLQNK 233
Cdd:PRK14974 158 AKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTD 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 234 TNLMNELKKIYQIvqkvssAKPQETLLVLDGTTGQSGLAQAKVFNEFTELTGIILTKMDSSSKGGIILAIKDLFNLPVKL 313
Cdd:PRK14974 238 ANLMDELKKIVRV------TKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAYVIGKPILF 311
|
330
....*....|....*....
gi 1797684557 314 IGFGETTADLAAFDLEQYV 332
Cdd:PRK14974 312 LGVGQGYDDLIPFDPDWFV 330
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
137-327 |
1.39e-57 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 185.11 E-value: 1.39e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 137 NVYLFVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAVAQLAEWAQRIGCDIVLPNSKEETPAVIFRGVQQGIQ 216
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 217 NEYDFVLCDTSGRLQNKTNLMNELKKIYQIVQkvssakPQETLLVLDGTTGQSGLAQAKVFNEFTELTGIILTKMDSSSK 296
Cdd:cd18539 81 EGFDVVIVDTAGRLHIDEELMDELKEIKEVLN------PDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDAR 154
|
170 180 190
....*....|....*....|....*....|.
gi 1797684557 297 GGIILAIKDLFNLPVKLIGFGETTADLAAFD 327
Cdd:cd18539 155 GGAALSIRHVTGKPIKFIGVGEKIEDLEPFH 185
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
116-335 |
2.16e-48 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 168.46 E-value: 2.16e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 116 IVYYIQDKLF--ETDLTVEANKTNVYLFVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAVAQLAEWAQRIGCD 193
Cdd:PRK00771 73 IVYEELVKLLgeETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVP 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 194 iVLPNSKEETPAVIfrgVQQGIQN--EYDFVLCDTSGRLQNKTNLMNELKKIYQIVqkvssaKPQETLLVLDGTTGQSGL 271
Cdd:PRK00771 153 -FYGDPDNKDAVEI---AKEGLEKfkKADVIIVDTAGRHALEEDLIEEMKEIKEAV------KPDEVLLVIDATIGQQAK 222
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1797684557 272 AQAKVFNEFTELTGIILTKMDSSSKGGIILAIKDLFNLPVKLIGFGETTADLAAFDLEQYV---LGL 335
Cdd:PRK00771 223 NQAKAFHEAVGIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFIsrlLGM 289
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
137-332 |
1.05e-45 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 154.27 E-value: 1.05e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 137 NVYLFVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAVAQLAEWAQRIGCDIVlpNSKEETPAVIF--RGVQQG 214
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFY--GSYTEKDPVKIakEGVEKF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 215 IQNEYDFVLCDTSGRLQNKTNLMNELKKIYQIVqkvssaKPQETLLVLDGTTGQSGLAQAKVFNEFTELTGIILTKMDSS 294
Cdd:cd17875 79 KKEKFDIIIVDTSGRHKQEEELFEEMKQISDAV------KPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGH 152
|
170 180 190
....*....|....*....|....*....|....*...
gi 1797684557 295 SKGGIILAIKDLFNLPVKLIGFGETTADLAAFDLEQYV 332
Cdd:cd17875 153 AKGGGALSAVAATGAPIIFIGTGEHIDDLEPFDPKRFV 190
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
138-332 |
3.41e-35 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 127.35 E-value: 3.41e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 138 VYLFVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAVAQLAEWAQRIGCDIVLPNSKEETPAVIFRGVQQGIQN 217
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 218 EYDFVLCDTSGRLQNKTNLMNELKKIyqivqkVSSAKPQETLLVLDGTTGQSGLAQAKVFNE-FTELT---------GII 287
Cdd:cd17876 82 GFDVVLIDTAGRMQNNEPLMRALAKL------IKENNPDLVLFVGEALVGNDAVDQLKKFNQaLADYSpsdnprlidGIV 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1797684557 288 LTKMDS-SSKGGIILAIKDLFNLPVKLIGFGETTADLAAFDLEQYV 332
Cdd:cd17876 156 LTKFDTiDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVV 201
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
120-332 |
4.56e-33 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 127.26 E-value: 4.56e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 120 IQDKLFE-----TDLTVEA-----NKTNVYLFVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAVAQLAEWAQR 189
Cdd:TIGR01425 74 IQDAVFEelcnlVDPGVEAftpkkGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATK 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 190 IGcdIVLPNSKEETPAVI--FRGVQQGIQNEYDFVLCDTSGRLQNKTNLMNELKKIYQIVQkvssakPQETLLVLDGTTG 267
Cdd:TIGR01425 154 AG--IPFYGSYEESDPVKiaSEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIK------PDSIIFVMDGSIG 225
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1797684557 268 QSGLAQAKVFNEFTELTGIILTKMDSSSKGGIILAIKDLFNLPVKLIGFGETTADLAAFDLEQYV 332
Cdd:TIGR01425 226 QAAFGQAKAFKDSVEVGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFV 290
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
54-317 |
1.19e-28 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 113.81 E-value: 1.19e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 54 NKLAANYVTVNEQFQEsLFEELVLLDIGYHAATKICDAIVQELKLQRVsdPQLIQEIIVDKLIVYyiqdklfETDLTvea 133
Cdd:COG1419 95 SGLAGESARLPPELAE-LLERLLEAGVSPELARELLEKLPEDLSAEEA--WRALLEALARRLPVA-------EDPLL--- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 134 NKTNVYLFVGVNGVGKTTSLAKLADQLT-KQNKRVLMVAGDTFRAGAVAQLAEWAQRIGCDIVLPNSKEETPAVI--FRG 210
Cdd:COG1419 162 DEGGVIALVGPTGVGKTTTIAKLAARFVlRGKKKVALITTDTYRIGAVEQLKTYARILGVPVEVAYDPEELKEALerLRD 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 211 vqqgiqneYDFVLCDTSGRLQNKTNLMNELKKIYQIVQKVssakpqETLLVLDGTTGQSGLAQ-AKVFNEFtELTGIILT 289
Cdd:COG1419 242 --------KDLVLIDTAGRSPRDPELIEELKALLDAGPPI------EVYLVLSATTKYEDLKEiVEAFSSL-GLDGLILT 306
|
250 260
....*....|....*....|....*...
gi 1797684557 290 KMDSSSKGGIILAIKDLFNLPVKLIGFG 317
Cdd:COG1419 307 KLDETASLGSILNLLIRTGLPLSYITNG 334
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
138-311 |
2.96e-25 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 100.32 E-value: 2.96e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 138 VYLFVGVNGVGKTTSLAKLADQLT-KQNKRVLMVAGDTFRAGAVAQLAEWAQRIGCDIVLPNSKEETPAVIFRGVqqgiq 216
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVlKKGKKVALITTDTYRIGAVEQLKTYAEIMGIPVEVAEDPEDLADALERLS----- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 217 nEYDFVLCDTSGRLQNKTNLMNELKKIYqivqkvSSAKPQETLLVLDGTTGQSGLAQ-AKVFNEFtELTGIILTKMDSSS 295
Cdd:cd17873 77 -DRDLILIDTAGRSPRDKEQLEELKELL------GAGEDIEVHLVLSATTKAKDLKEiIERFSPL-GYRGLILTKLDETT 148
|
170
....*....|....*.
gi 1797684557 296 KGGIILAIKDLFNLPV 311
Cdd:cd17873 149 SLGSVLSVLAESQLPV 164
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
138-311 |
1.98e-17 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 82.63 E-value: 1.98e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 138 VYLFVGVNGVGKTTSLAKLADQLTK--QNKRVLMVAGDTFRAGAVAQLAEWAQRIGCDIVLPNSKEEtpavifrgVQQGI 215
Cdd:PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALlyGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKE--------LAKAL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 216 Q--NEYDFVLCDTSGRLQNKTNLMNELKKIYQIvqkvsSAKPQETLLVLdGTTGQSGLAQAkVFNEFTEL--TGIILTKM 291
Cdd:PRK05703 295 EqlRDCDVILIDTAGRSQRDKRLIEELKALIEF-----SGEPIDVYLVL-SATTKYEDLKD-IYKHFSRLplDGLIFTKL 367
|
170 180
....*....|....*....|..
gi 1797684557 292 D-SSSKGGII-LAIKdlFNLPV 311
Cdd:PRK05703 368 DeTSSLGSILsLLIE--SGLPI 387
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
88-228 |
6.33e-15 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 73.91 E-value: 6.33e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 88 ICDAIVQEL--KLQRVSDPQLIQEIIVDKLIVYyIQDKLFETDLTveaNKTNVYLFVGVNGVGKTTSLAKLADQ--LTKQ 163
Cdd:TIGR03499 148 VSEELARELleKLPEDADAEDAWRWLREALEGM-LPVKPEEDPIL---EQGGVIALVGPTGVGKTTTLAKLAARfaLEHG 223
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1797684557 164 NKRVLMVAGDTFRAGAVAQLAEWAQRIGCDIVLPNSKEETPAVIFRgvqqgiQNEYDFVLCDTSG 228
Cdd:TIGR03499 224 KKKVALITTDTYRIGAVEQLKTYAEILGIPVKVARDPKELREALDR------LRDKDLILIDTAG 282
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
117-322 |
1.02e-14 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 74.77 E-value: 1.02e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 117 VYYIQDKLFETDlTVEANKTNVYLFVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAVAQLAEWAQRIGCDIVL 196
Cdd:PRK12726 188 VPYLSGKLAVED-SFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 197 PNSkeetPAVIFRGVQ-QGIQNEYDFVLCDTSGRlqnktNLMNElKKIYQIVQKVSSAKPQETLLvldgtTGQSGLAQAK 275
Cdd:PRK12726 267 ATS----PAELEEAVQyMTYVNCVDHILIDTVGR-----NYLAE-ESVSEISAYTDVVHPDLTCF-----TFSSGMKSAD 331
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1797684557 276 VFNEFTELT-----GIILTKMDSSSKGGIILAIKDLFNLPVKLIGFGETTAD 322
Cdd:PRK12726 332 VMTILPKLAeipidGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITE 383
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
110-318 |
5.17e-12 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 66.63 E-value: 5.17e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 110 IIVDKLIVYYIQD--KLFETDLTVEANKTNVYLfVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAVAQLAEWA 187
Cdd:PRK11889 214 ITEEEVIEYILEDmrSHFNTENVFEKEVQTIAL-IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYV 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 188 QRIGCDIV-LPNSKEETPAVIFRGVQQGIqneyDFVLCDTSGRLQNKTNLMNELkkiyqiVQKVSSAKPQETLLVLDGTT 266
Cdd:PRK11889 293 KTIGFEVIaVRDEAAMTRALTYFKEEARV----DYILIDTAGKNYRASETVEEM------IETMGQVEPDYICLTLSASM 362
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1797684557 267 GQSGLAQakVFNEFTE--LTGIILTKMDSSSKGGIILAIKDLFNLPVKLIGFGE 318
Cdd:PRK11889 363 KSKDMIE--IITNFKDihIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
57-318 |
7.02e-12 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 66.36 E-value: 7.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 57 AANYVTVNEQFQESLFEelVLLDIGYHAatKICDAIVQELKLQrVSDPQ---LIQEIIVDKLIVYYIQDKLFEtdltvea 133
Cdd:PRK14723 116 AAGEVAGRDPLRASLFR--WLLGAGFSG--QLARALLERLPVG-YDRPAamaWIRNELATHLPVLRDEDALLA------- 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 134 nKTNVYLFVGVNGVGKTTSLAKLADQ--LTKQNKRVLMVAGDTFRAGAVAQLaewaqRIGCDIVLPNSKEETPAVIFRGV 211
Cdd:PRK14723 184 -QGGVLALVGPTGVGKTTTTAKLAARcvAREGADQLALLTTDSFRIGALEQL-----RIYGRILGVPVHAVKDAADLRFA 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 212 QQGIQNEYdFVLCDTSGRLQNKTNLMNelkkiyQIVQKVSSAKPQETLLVLDGTtgqsglAQAKVFNEFT---------E 282
Cdd:PRK14723 258 LAALGDKH-LVLIDTVGMSQRDRNVSE------QIAMLCGVGRPVRRLLLLNAA------SHGDTLNEVVhayrhgageD 324
|
250 260 270
....*....|....*....|....*....|....*.
gi 1797684557 283 LTGIILTKMDSSSKGGIILAIKDLFNLPVKLIGFGE 318
Cdd:PRK14723 325 VDGCIITKLDEATHLGPALDTVIRHRLPVHYVSTGQ 360
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
138-322 |
7.82e-12 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 66.17 E-value: 7.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 138 VYLFVGVNGVGKTTSLAKLADQLTKQN--KRVLMVAGDTFRAGAVAQLAEWAQRIGCDIVLPNSKEETPAVIFRgvqqgi 215
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQHapRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER------ 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 216 QNEYDFVLCDTSGRLQNKTNLMNELkkiyqivQKVSSAKPQETLLVLDGTTGQSGLAQakVFNEF--TELTGIILTKMDS 293
Cdd:PRK12727 426 LRDYKLVLIDTAGMGQRDRALAAQL-------NWLRAARQVTSLLVLPANAHFSDLDE--VVRRFahAKPQGVVLTKLDE 496
|
170 180
....*....|....*....|....*....
gi 1797684557 294 SSKGGIILAIKDLFNLPVKLIGFGETTAD 322
Cdd:PRK12727 497 TGRFGSALSVVVDHQMPITWVTDGQRVPD 525
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
110-318 |
1.82e-11 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 63.61 E-value: 1.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 110 IIVDKLIVYYIQD--KLFETDLTVEANKTNVYLfVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAVAQLAEWA 187
Cdd:PRK06731 48 MITEEVIEYILEDmsSHFNTENVFEKEVQTIAL-IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYV 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 188 QRIGCDIV-LPNSKEETPAVIFRGVQQGIqneyDFVLCDTSGRLQNKTNLMNELkkiyqiVQKVSSAKPQETLLVLDGTT 266
Cdd:PRK06731 127 KTIGFEVIaVRDEAAMTRALTYFKEEARV----DYILIDTAGKNYRASETVEEM------IETMGQVEPDYICLTLSASM 196
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1797684557 267 GQSGLAQAKVFNEFTELTGIILTKMDSSSKGGIILAIKDLFNLPVKLIGFGE 318
Cdd:PRK06731 197 KSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 248
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
137-261 |
2.77e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 55.07 E-value: 2.77e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 137 NVYLFVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAVAQLaewAQRIGCDIVLPNSKEETPAVIFRGVQqgiQ 216
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQL---LLIIVGGKKASGSGELRLRLALALAR---K 76
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1797684557 217 NEYDFVLCDTSGRLQNKTNLMNELKKIYQIVQKVSSAKPQETLLV 261
Cdd:smart00382 77 LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVIL 121
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
54-303 |
2.93e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 57.99 E-value: 2.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 54 NKLAANYVTVNEQFQESLFEELVLLDIGYHAATKICDAIVQELKLQRVSDPQLIQEIIVdklivYYIQDKLFETDLTVEA 133
Cdd:PRK12723 97 NELAHKKEEINHPTILKIEDILRENDFSESYIKDINEFIKKEFSLSDLDDYDKVRDSVI-----IYIAKTIKCSGSIIDN 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 134 NKTNVYLFVGVNGVGKTTSLAKLAD----QLTKQNKRVLMVAGDTFRAGAVAQLAEWAQRIGcdivLPNSKEETpaviFR 209
Cdd:PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAiygiNSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMG----IPVKAIES----FK 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 210 GVQQGI--QNEYDFVLCDTSGRLQNKTNLMNELKKIYQivqkvSSAKPQETLLVLDGTTGQSGLAQakVFNEFTEL--TG 285
Cdd:PRK12723 244 DLKEEItqSKDFDLVLVDTIGKSPKDFMKLAEMKELLN-----ACGRDAEFHLAVSSTTKTSDVKE--IFHQFSPFsyKT 316
|
250
....*....|....*...
gi 1797684557 286 IILTKMDSSSKGGIILAI 303
Cdd:PRK12723 317 VIFTKLDETTCVGNLISL 334
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
63-339 |
3.30e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 58.05 E-value: 3.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 63 VNEQFQESLFEELVL--------LDIG-YHAATkicDAIVQELKlQRVS-DPQLIQeiivdklivyyiqdklfetdlTVE 132
Cdd:PRK12724 165 VREGMSQSYVEEMASkleerlspVDQGrNHNVT---ERAVTYLE-ERVSvDSDLFS---------------------GTG 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 133 ANKTNVYLFVGVNGVGKTTSLAKLADQLT-KQNKRVLMVAGDTFRAGAVAQLAEWAQRIGcdivLPNskeeTPAVIFRGV 211
Cdd:PRK12724 220 KNQRKVVFFVGPTGSGKTTSIAKLAAKYFlHMGKSVSLYTTDNYRIAAIEQLKRYADTMG----MPF----YPVKDIKKF 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 212 QQGI-QNEYDFVLCDTSGRLQNKTNLMNELKKIYQIVQKVSSAkpqETLLVLDGTTGQSGLAQAKVFNEFTELTGIILTK 290
Cdd:PRK12724 292 KETLaRDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSV---ENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTK 368
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1797684557 291 MDSSSKGGIILAIKDLFNLPVKLIGFGETTadlaAFDleqyVLGLTKNL 339
Cdd:PRK12724 369 LDEADFLGSFLELADTYSKSFTYLSVGQEV----PFD----ILNATKNL 409
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
108-318 |
4.59e-07 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 51.26 E-value: 4.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 108 QEIIVDKLIVYYIQDKLFEtdltveanKTNVYLFVGVNGVGKTTSLAKLADQLTKQ--NKRVLMVAGDTFRAGAVAQLAE 185
Cdd:PRK14722 117 QSVLAANLPVLDSEDALME--------RGGVFALMGPTGVGKTTTTAKLAARCVMRfgASKVALLTTDSYRIGGHEQLRI 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 186 WAQRIGCDIVLPNSKEETPAVIFRgvqqgIQNEYdFVLCDTSGRLQNKTNLMNELKKIYqivqkvSSAKPQETLLVLDGT 265
Cdd:PRK14722 189 FGKILGVPVHAVKDGGDLQLALAE-----LRNKH-MVLIDTIGMSQRDRTVSDQIAMLH------GADTPVQRLLLLNAT 256
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1797684557 266 TG-----------QSGLAQAKVfnEFTELTGIILTKMDSSSKGGIILAIKDLFNLPVKLIGFGE 318
Cdd:PRK14722 257 SHgdtlnevvqayRSAAGQPKA--ALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQ 318
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
135-301 |
9.07e-06 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 47.25 E-value: 9.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 135 KTNVYLFVGVNGVGKTTSLAKLADQLTKQN--KRVLMVAGDTFRAGAVAQLAEWAQRIGcdIVLPNSKEETPAVIFRGVQ 212
Cdd:PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHgaDKVALLTTDSYRIGGHEQLRIYGKLLG--VSVRSIKDIADLQLMLHEL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 213 QGIQneydFVLCDTSGRLQNKTNLMNELKKIYQIVQKVssakpqETLLVLDGTTgqSGLAQAKVFNEFTE--LTGIILTK 290
Cdd:PRK14721 268 RGKH----MVLIDTVGMSQRDQMLAEQIAMLSQCGTQV------KHLLLLNATS--SGDTLDEVISAYQGhgIHGCIITK 335
|
170
....*....|.
gi 1797684557 291 MDSSSKGGIIL 301
Cdd:PRK14721 336 VDEAASLGIAL 346
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
47-119 |
1.99e-05 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 42.15 E-value: 1.99e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1797684557 47 NSFANTINKLAANYVTVNEQFQEsLFEELVLLDIGYHAATKICDAIVQELK---LQRVSDPQLIQEIIVDKLIVYY 119
Cdd:smart00963 3 KALGKLLGELFLTEKDDEELLEE-LEEALLEADVGVEVVKEIIERVKEKAKgevLKGLTPKQEVKKILKEELVKIL 77
|
|
| ArsA_ATPase |
pfam02374 |
Anion-transporting ATPase; This Pfam family represents a conserved domain, which is sometimes ... |
136-252 |
4.06e-04 |
|
Anion-transporting ATPase; This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.
Pssm-ID: 396792 Cd Length: 302 Bit Score: 41.57 E-value: 4.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 136 TNVYLFVGVNGVGKTTSLAKLADQLTKQNKRVLMVA-------GDTF--RAGAVAQLAE---WAQRIGCDIVLPN----- 198
Cdd:pfam02374 1 MRWIFFGGKGGVGKTTVSAATAVQLSELGKKVLLIStdpahslSDSFnqKFGHEPTKVKenlSAMEIDPNMELEEywqev 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 199 SKEETPAVIFRGVQQGIQ------------------------NEYDFVLCDTS------GRLQNKTNLMNELKKIYQIVQ 248
Cdd:pfam02374 81 QKYMNALLGLRMLEGILAeelaslpgideaasfdefkkymdeGEYDVVVFDTAptghtlRLLSLPTVLGWYLEKIVKLKN 160
|
....
gi 1797684557 249 KVSS 252
Cdd:pfam02374 161 QIGP 164
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
47-115 |
4.60e-04 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 38.22 E-value: 4.60e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1797684557 47 NSFANTINKLAaNYVTVNEQ-FQESLFE-ELVLL--DIGYHAATKICDAIVQ-ELKLQRVSDPQLIQEIIVDKL 115
Cdd:pfam02881 3 EKLSSLFKGLR-GKGKIDEEdLEEALKElEEALLeaDVGVEVVKKIIERLREkAVGEKKLKPPQEVKKILKEEL 75
|
|
| TMPK |
cd01672 |
Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the ... |
141-188 |
6.51e-04 |
|
Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Pssm-ID: 238835 Cd Length: 200 Bit Score: 40.33 E-value: 6.51e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1797684557 141 FVGVNGVGKTTSLAKLADQLTKQNKRVLMVA--GDTFRAGAVAQLAEWAQ 188
Cdd:cd01672 5 FEGIDGAGKTTLIELLAERLEARGYEVVLTRepGGTPIGEAIRELLLDPE 54
|
|
| ParA_partition |
NF041546 |
ParA family partition ATPase; |
146-230 |
7.58e-04 |
|
ParA family partition ATPase;
Pssm-ID: 469431 [Multi-domain] Cd Length: 202 Bit Score: 40.23 E-value: 7.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 146 GVGKTTSLAKLADQLTKQNKRVLMVAGDTfragavaQ--LAEWAQRigcdivlpnsKEETPAVIFRGVQ--------QGI 215
Cdd:NF041546 10 GVGKTTLATHLAAALARRGYRVLLVDADP-------QgsALDWAAA----------REDERPFPVVGLArptlhrelPSL 72
|
90
....*....|....*
gi 1797684557 216 QNEYDFVLCDTSGRL 230
Cdd:NF041546 73 ARDYDFVVIDGPPRA 87
|
|
| SIMIBI |
cd01983 |
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ... |
137-197 |
1.73e-03 |
|
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Pssm-ID: 349751 [Multi-domain] Cd Length: 107 Bit Score: 37.41 E-value: 1.73e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1797684557 137 NVYLFVG-VNGVGKTTSLAKLADQLTKQNKRVLMVAGDTF---RAGAVAQLAEWAQRIGCDIVLP 197
Cdd:cd01983 1 RVIAVTGgKGGVGKTTLAAALAVALAAKGYKVLLIDLDDYvliDGGGGLETGLLLGTIVALLALK 65
|
|
| CbiA |
pfam01656 |
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ... |
146-247 |
1.97e-03 |
|
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Pssm-ID: 426369 [Multi-domain] Cd Length: 228 Bit Score: 39.25 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 146 GVGKTTSLAKLADQLTKQNKRVLMVAGD-----TFRAGAVAQLAEWAQRIGC---------DIVLPNSKEETPAVIFRGV 211
Cdd:pfam01656 9 GVGKTTLAANLARALARRGLRVLLIDLDpqsnnSSVEGLEGDIAPALQALAEglkgrvnldPILLKEKSDEGGLDLIPGN 88
|
90 100 110
....*....|....*....|....*....|....*.
gi 1797684557 212 QQGIQNEYDFVLCDTSGRLQnktNLMNELKKIYQIV 247
Cdd:pfam01656 89 IDLEKFEKELLGPRKEERLR---EALEALKEDYDYV 121
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
140-249 |
5.13e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 36.55 E-value: 5.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797684557 140 LFVGVNGVGKTTSLAKLADQLTKQNKRVLMVagDTFRAGAVAQLAEWaqrIGCDIVLPNSKEETPAVIFRGVQQGIQNEY 219
Cdd:pfam13401 9 VLTGESGTGKTTLLRRLLEQLPEVRDSVVFV--DLPSGTSPKDLLRA---LLRALGLPLSGRLSKEELLAALQQLLLALA 83
|
90 100 110
....*....|....*....|....*....|..
gi 1797684557 220 D--FVLCDTSGRLQNKtnLMNELKKIYQIVQK 249
Cdd:pfam13401 84 VavVLIIDEAQHLSLE--ALEELRDLLNLSSK 113
|
|
| |
