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Conserved domains on  [gi|1797022896|gb|QHH25514|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Myzomela irianawidodoae]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-328 8.13e-155

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 437.72  E-value: 8.13e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   1 LIFTFSLLLGTTITISSNHWAMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWDL 80
Cdd:MTH00112    7 LIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  81 TQLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLATGLLLSTAMKLPPITLLFLTSHSLDSTLLTTMAVLSAALGG 160
Cdd:MTH00112   87 TQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 161 WVGLNQTQIRKILAFSSIAHLGWMAIILSYSPKLTLLNFYLYSLVTAAVFLTLNTTKTLKLSTLMTSWTKTPALNTALLL 240
Cdd:MTH00112  167 WGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLML 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 241 TLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLAYCTTITLPPHTTSHMKQWRTNKPTNISIA 320
Cdd:MTH00112  247 TLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTA 326


                  ....*...
gi 1797022896 321 ILTTLSIT 328
Cdd:MTH00112  327 TLTTLSTL 334
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-328 8.13e-155

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 437.72  E-value: 8.13e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   1 LIFTFSLLLGTTITISSNHWAMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWDL 80
Cdd:MTH00112    7 LIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  81 TQLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLATGLLLSTAMKLPPITLLFLTSHSLDSTLLTTMAVLSAALGG 160
Cdd:MTH00112   87 TQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 161 WVGLNQTQIRKILAFSSIAHLGWMAIILSYSPKLTLLNFYLYSLVTAAVFLTLNTTKTLKLSTLMTSWTKTPALNTALLL 240
Cdd:MTH00112  167 WGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLML 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 241 TLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLAYCTTITLPPHTTSHMKQWRTNKPTNISIA 320
Cdd:MTH00112  247 TLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTA 326


                  ....*...
gi 1797022896 321 ILTTLSIT 328
Cdd:MTH00112  327 TLTTLSTL 334
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 17-262 1.12e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 95.84  E-value: 1.12e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  17 SNHWAMAWTGLEINTLAVLPLI-SKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWDLTQL-----------T 84
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  85 HPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLATGLLL-STAMKLPPI-----TLLFLTSHSLDSTLLTTMAVLSAAL 158
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 159 GGWVGLNQTQIRKILAFSSIAHLGWMAIILS----YSPKLTLLNFYLYSLVTAAVFL-----TLNTTKTLKLSTLMTSWT 229
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1797022896 230 KTPALNTALLLTLLSLAGLPPLTGFLPKWFILQ 262
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-264 1.14e-21

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 95.18  E-value: 1.14e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   8 LLGTTITISSNHWAMAWTGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALILF-SSMTNAWhTGQWDLTQL-- 83
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIaa 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  84 ---THPTSCLILTAALAM-------KLGLAPFHFWFPEVLQGTSLATGLLLSTAMKL----PPITLLFLTSHSLDS---T 146
Cdd:COG1007   191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 147 LLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAI-ILSYSPK-LTLLNFYL--YSLVTAAVFLTL-----NTTK 217
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVIlllsrKGGE 350

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1797022896 218 TLKLSTLMTSWTKTPALNTALLLTLLSLAGLPPLTGFLPKWFILQEL 264
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-291 8.76e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 86.93  E-value: 8.76e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   8 LLGTTITISSNHWAMAWTGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWDLTQLTHP 86
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  87 TSCLILT------------AALAMKLGLAPFHFWFPEVLQGTSLATGLLLSTAMKLP---PITLLFLTSHSLDST----L 147
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGFSEawqiF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 148 LTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAIILSYSPKLTLLN--FYL--YSLVTAAVFLTL------NTTK 217
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLsllrsyKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1797022896 218 TLKLSTLMTSWTKTPALNTALLLTLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLA 291
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-328 8.13e-155

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 437.72  E-value: 8.13e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   1 LIFTFSLLLGTTITISSNHWAMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWDL 80
Cdd:MTH00112    7 LIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  81 TQLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLATGLLLSTAMKLPPITLLFLTSHSLDSTLLTTMAVLSAALGG 160
Cdd:MTH00112   87 TQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 161 WVGLNQTQIRKILAFSSIAHLGWMAIILSYSPKLTLLNFYLYSLVTAAVFLTLNTTKTLKLSTLMTSWTKTPALNTALLL 240
Cdd:MTH00112  167 WGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLML 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 241 TLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLAYCTTITLPPHTTSHMKQWRTNKPTNISIA 320
Cdd:MTH00112  247 TLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTA 326


                  ....*...
gi 1797022896 321 ILTTLSIT 328
Cdd:MTH00112  327 TLTTLSTL 334
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 2-327 2.85e-128

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 370.41  E-value: 2.85e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   2 IFTFSLLLGTTITISSNHWAMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWDLT 81
Cdd:MTH00070    8 ILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIM 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  82 QLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLATGLLLSTAMKLPPITLLFLTSHSLDSTLLTTMAVLSAALGGW 161
Cdd:MTH00070   88 NMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGW 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 162 VGLNQTQIRKILAFSSIAHLGWMAIILSYSPKLTLLNFYLYSLVTAAVFLTLNTTKTLKLSTLMTSWTKTPALNTALLLT 241
Cdd:MTH00070  168 GGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLT 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 242 LLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLAYCTTITLPPHTTSHMKQWRTNKPTNISIAI 321
Cdd:MTH00070  248 LLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSL 327


                  ....*.
gi 1797022896 322 LTTLSI 327
Cdd:MTH00070  328 TIILSL 333
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 2-328 1.01e-125

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 364.13  E-value: 1.01e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   2 IFTFSLLLGTTITISSNHWAMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWDLT 81
Cdd:MTH00135    8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQ 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  82 QLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLATGLLLSTAMKLPPITLLFLTSHSlDSTLLTTMAVLSAALGGW 161
Cdd:MTH00135   88 QMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 162 VGLNQTQIRKILAFSSIAHLGWMAIILSYSPKLTLLNFYLYSLVTAAVFLTLNTTKTLKLSTLMTSWTKTPALNTALLLT 241
Cdd:MTH00135  167 GGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLI 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 242 LLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLAYCTTITLPPHTTSHMKQWRTNKP-TNISIA 320
Cdd:MTH00135  247 LLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTqLTLPLA 326


                  ....*...
gi 1797022896 321 ILTTLSIT 328
Cdd:MTH00135  327 ISTTATLM 334
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-326 3.67e-109

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 321.80  E-value: 3.67e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   1 LIFTFSLLLGTTITISSNHWAMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWDL 80
Cdd:MTH00105    7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  81 TQLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLATGLLLSTAMKLPPITLLFLTSHSLDSTLLTTMAVLSAALGG 160
Cdd:MTH00105   87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 161 WVGLNQTQIRKILAFSSIAHLGWMAIILSYSPKLTLLNFYLYSLVTAAVFLTLNTTKTLKLSTLMTSWTKTPALNTALLL 240
Cdd:MTH00105  167 WGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 241 TLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLAYCTTITLPPhTTSHMK-QWR-TNKPTNIS 318
Cdd:MTH00105  247 TLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfENTKPMTL 325


                  ....*...
gi 1797022896 319 IAILTTLS 326
Cdd:MTH00105  326 LPTLIILS 333
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-327 3.64e-96

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 288.79  E-value: 3.64e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   1 LIFTFSLLLGTTITISSNHWAMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWDL 80
Cdd:MTH00200    7 PLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  81 TQLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLATGLLLSTAMKLPPITLLFLTSHSLDSTLLTTMAVLSAALGG 160
Cdd:MTH00200   87 SEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 161 WVGLNQTQIRKILAFSSIAHLGWMAIILSYSPKLTLLNFYLYSLVTAAVFLTLNTTKTLKLSTLMTSWTKTPALNTALLL 240
Cdd:MTH00200  167 WGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 241 TLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLAYCTTITLPPHTTSHMKQWRTNKPTNISIA 320
Cdd:MTH00200  247 TLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVG 326


                  ....*..
gi 1797022896 321 ILTTLSI 327
Cdd:MTH00200  327 LLLLLSI 333
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-327 2.56e-83

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 256.01  E-value: 2.56e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   1 LIFTFSLLLGTTITISSNHWAMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWDL 80
Cdd:MTH00041    7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  81 TQLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLATGLLLSTAMKLPPITLLFLTSHSLDSTLLTTMAVLSAALGG 160
Cdd:MTH00041   87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 161 WVGLNQTQIRKILAFSSIAHLGWMAIILSYSPKLTLLNFYLYSLVTAAVFLTLNTTKTLKLSTLMTSWTKTPALNTALLL 240
Cdd:MTH00041  167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 241 TLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLAYCTTITLPPHTTSHMKQWRTNKPTNISIA 320
Cdd:MTH00041  247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGV 326


                  ....*..
gi 1797022896 321 ILTTLSI 327
Cdd:MTH00041  327 ILSILSS 333
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-327 4.12e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 188.11  E-value: 4.12e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   1 LIFTFSLLLGTTITISSNHWAMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWhtgqwdL 80
Cdd:MTH00160    8 LLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML------N 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  81 TQLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLATGLLLSTAMKLPPITLLfltSHSLDSTLLTTMAVLSAALGG 160
Cdd:MTH00160   82 LMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIILSAIIGA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 161 WVGLNQTQIRKILAFSSIAHLGWMAIILSYSPKLTLLNFYLYSLVTAAVFLTLNTTKTLKLSTLMTSWTKTPALNTALLL 240
Cdd:MTH00160  159 IGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 241 TLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLAYCTTITLPPHTTSHMKQwrTNKPTNISIA 320
Cdd:MTH00160  239 NLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKK--KKNKFSLILN 316


                  ....*..
gi 1797022896 321 ILTTLSI 327
Cdd:MTH00160  317 FLSFISL 323
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-296 3.43e-47

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 161.98  E-value: 3.43e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   1 LIFTFSLLLGTTITISSNHWAMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWDL 80
Cdd:MTH00144    7 LLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  81 TqlthptscLILTAALAMKLGLAPFHFWFPEVLQGTSLATGLLLSTAMKLPPITLL-FLTSHSLDSTLLTTMAVLSAALG 159
Cdd:MTH00144   87 M--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLsNFLDLYWLAYLLCVISVLSALVG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 160 GWVGLNQTQIRKILAFSSIAHLGWMAIILSYSPKLTLLNFYLYSLVTAAVFLTLNtTKTLKLSTLMTSWTKTPALNTALL 239
Cdd:MTH00144  159 SIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLW-SGDSGSMKDLGSLKPSYKTGLSII 237

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1797022896 240 LTLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLAYCTTI 296
Cdd:MTH00144  238 SLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-304 2.41e-45

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 157.25  E-value: 2.41e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   1 LIFTFSLLLGTTITISSNHWAMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALILFSSmtnawhTGQWDL 80
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  81 TQLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLATGLLLSTAMKLPPITLLFLTSHSLDSTLLTTMAVLSAALGG 160
Cdd:MTH00011   83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 161 WVGLNQTQIRKILAFSSIAHLGWMAIILSYSPKLTLLNFYLYSLVTAAVFLTLNTTKTLKLSTLMTSWTKTPALNTALLL 240
Cdd:MTH00011  163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1797022896 241 TLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLAYcTTITLPPHTTS 304
Cdd:MTH00011  243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 2-296 6.18e-41

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 145.59  E-value: 6.18e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   2 IFTFSLLLGTTITISSNHWAMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAwhtgqwdLT 81
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SN 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  82 QLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLATGLLLSTAMKLPPITLLFLTSHSLDstLLTTMAVLSAALGGW 161
Cdd:MTH00197   75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFM--GLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 162 VGLNQTQIRKILAFSSIAHLGWMAIILSYSPKLTLLNFYLYSLVTAAVFLTLNTTKTLKLSTLMTSWTKTPALNTALLLT 241
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1797022896 242 LLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLAYCTTI 296
Cdd:MTH00197  233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 17-262 1.12e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 95.84  E-value: 1.12e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  17 SNHWAMAWTGLEINTLAVLPLI-SKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWDLTQL-----------T 84
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  85 HPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLATGLLL-STAMKLPPI-----TLLFLTSHSLDSTLLTTMAVLSAAL 158
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 159 GGWVGLNQTQIRKILAFSSIAHLGWMAIILS----YSPKLTLLNFYLYSLVTAAVFL-----TLNTTKTLKLSTLMTSWT 229
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1797022896 230 KTPALNTALLLTLLSLAGLPPLTGFLPKWFILQ 262
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 7-261 4.01e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 95.48  E-value: 4.01e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   7 LLLGTTITISSNHWAMAWTGLEINTLAVLPLI-SKSHHPRAIEAATKYFLVQAAASALILFS-------------SMTNA 72
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  73 WHTGQWDLTQLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLATGLLLSTAMKLPPITLLFltSHSLDSTLLTTMA 152
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 153 VLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAIILSY----SPKLTLLNFYLY---SLVTAAVFLTLNTTKTL--KLST 223
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYiimSICVFSIILALNVYKNLiiEFSG 239

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1797022896 224 LMTswtKTPALNTALLLTLLSLAGLPPLTGFLPKWFIL 261
Cdd:MTH00196  240 LSR---RLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-264 1.14e-21

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 95.18  E-value: 1.14e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   8 LLGTTITISSNHWAMAWTGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALILF-SSMTNAWhTGQWDLTQL-- 83
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIaa 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  84 ---THPTSCLILTAALAM-------KLGLAPFHFWFPEVLQGTSLATGLLLSTAMKL----PPITLLFLTSHSLDS---T 146
Cdd:COG1007   191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 147 LLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAI-ILSYSPK-LTLLNFYL--YSLVTAAVFLTL-----NTTK 217
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVIlllsrKGGE 350

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1797022896 218 TLKLSTLMTSWTKTPALNTALLLTLLSLAGLPPLTGFLPKWFILQEL 264
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 7-261 1.43e-19

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 88.92  E-value: 1.43e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   7 LLLGTTITISSNHWAMAWTGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWDL----T 81
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  82 QLTHPTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLATGLLLSTAMKLPPITLLFLTSHSLDSTLLTtmAVLSAALGGW 161
Cdd:MTH00199  186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAI 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 162 VGLNQTQIRKILAFSSIAHLGW----MAIILSYSPKLTLLNFYLYSLVTAAVF---LTLNTTKTLKLSTLMTSwTKTPAL 234
Cdd:MTH00199  264 GALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFsiiLSLKLTKGLIVEVSGLS-RKNPVI 342

                         250       260
                  ....*....|....*....|....*..
gi 1797022896 235 NTALLLTLLSLAGLPPLTGFLPKWFIL 261
Cdd:MTH00199  343 ALTLALTFLSIAGIPPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
8-290 1.45e-19

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 89.11  E-value: 1.45e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   8 LLGTTITISSNHWAMAWTGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALIL--------------FSSMTNA 72
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  73 WHTGQWDLTQLThpTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLATGLLLSTAMKLPPITLL-------FLTSHSLDS 145
Cdd:PRK05777  193 LADGSGNSLLLL--FGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllvvaFGGLSEDWQ 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 146 TLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWM--AIILSYSPKLTLLNFYL--YSLVTAAVF--LTLNTTKTL 219
Cdd:PRK05777  271 QVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvGLAAGTAEGYSAVLFYLlaYLFMTLGAFgvISLLRRKGG 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1797022896 220 KLSTLmTSWT----KTPALNTALLLTLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRL 290
Cdd:PRK05777  351 EAESI-SDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-291 8.76e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 86.93  E-value: 8.76e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   8 LLGTTITISSNHWAMAWTGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWDLTQLTHP 86
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  87 TSCLILT------------AALAMKLGLAPFHFWFPEVLQGTSLATGLLLSTAMKLP---PITLLFLTSHSLDST----L 147
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGFSEawqiF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 148 LTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAIILSYSPKLTLLN--FYL--YSLVTAAVFLTL------NTTK 217
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLsllrsyKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1797022896 218 TLKLSTLMTSWTKTPALNTALLLTLLSLAGLPPLTGFLPKWFILQELTKQDMALSAVALSLLSLLSLFFYLRLA 291
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 7-262 4.00e-16

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 78.65  E-value: 4.00e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   7 LLLGTTITISSNHWAMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWDLTQLTH- 85
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  86 ---------PTSCLILTAALAMKLGLAPFHFWFPEVLQGTSLATGLLLSTAM-KLPP------ITLLFLTSHSLD-STLL 148
Cdd:COG0651   196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailrvLTLLFGADPALFlGTLL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 149 TTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAIILSYSPKLTLLNFYLY----SLVTAAVFLT----LNTTKTLK 220
Cdd:COG0651   276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAagaiERATGTRD 355

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1797022896 221 LSTLMTSWTKTPALNTALLLTLLSLAGLPPLTGFLPKWFILQ 262
Cdd:COG0651   356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQ 397
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 9-261 1.17e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 77.59  E-value: 1.17e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   9 LGTTITISSNHWAMAWTGLEINTLAVLPLISKSHHPRAI---------EAATKYFLVQAAASALILFSSMTNAWHTGQWD 79
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNEG 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  80 -----LTQLTHPTSC---------LILTAALAMKLGLAPFHFWFPEVLQGTSLATGLLLSTAMKLppITLLFLTSHSLDS 145
Cdd:MTH00198  279 mlgtiLSATLETTNIelrqgslgyLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 146 TLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAIILSYSPKLTLLNFYLYS---LVTAAVFLTL--------- 213
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAvtyLVSALASFTVictleefgt 436

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1797022896 214 -------------NTTKTLKLSTLMTSWTKTPALNTALLLTLLSLAGLPPLTGFLPKWFIL 261
Cdd:MTH00198  437 rtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
44-186 8.79e-12

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 65.84  E-value: 8.79e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  44 PRAIEAATKYFLVQAAASALILF-SSMTNAWHTGQWDLTQ-----LTHPTSCLILT-----AALAMKLGLAPFHFWFPEV 112
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAialalITSPSLGLALAlvfviAGIAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 113 LQGTSLATGLLLSTAMKLP----PITLLFLTSHSLDS---TLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMA 185
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316


                  .
gi 1797022896 186 I 186
Cdd:PRK02504  317 I 317
ndhB CHL00049
NADH dehydrogenase subunit 2
 45-257 2.39e-11

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 64.64  E-value: 2.39e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  45 RAIEAATKYFLVQAAASALIL--FSSMTNAWHtGQWDL---------TQLTHPTSCLI----LTAALAMKLGLAPFHFWF 109
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVygFSWLYGLSG-GEIELqeivnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWT 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 110 PEVLQG-----------TSLATGLLLSTAMklppITLLFLTSHSLDSTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSI 178
Cdd:CHL00049  238 PDVYEGsptpvvaflsvTSKVAASALATRI----FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSI 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 179 AHLGWMAIIL-------SYSPKLTLLNFYLyslvtaavFLTLNTTKTLKLSTLMT----------SWTKTPALNTALLLT 241
Cdd:CHL00049  314 GQIGYVIIGIivgdsndGYASMITYMLFYI--------FMNLGTFACIVLFGLRTgtdnirdyagLYTKDPFLALSLALC 385

                         250
                  ....*....|....*.
gi 1797022896 242 LLSLAGLPPLTGFLPK 257
Cdd:CHL00049  386 LLSLGGIPPLAGFFGK 401
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 43-186 6.72e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 60.09  E-value: 6.72e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  43 HPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQW--DLTQLTH-----PTSCLILTA---ALAMKLGLAPFHFWFPEV 112
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 113 LQGTSLATGLLLSTAMK-----------LPpitlLFLTSHSLDSTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHL 181
Cdd:COG1008   236 HVEAPTAGSVLLAGVLLkmggygllrfaLP----LFPEASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHM 311


                  ....*
gi 1797022896 182 GWMAI 186
Cdd:COG1008   312 GFVLL 316
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 3-213 1.30e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 52.83  E-value: 1.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   3 FTFSLLLGT-TITISSNHWAMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAA------SALILFSSMTNAWHT 75
Cdd:PRK08676  106 LGFNLLLSViTFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGT 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  76 GQWDLTQLTHPTSCL---ILTAA-------LAMKLGLAPFHFWFPEV-LQGTSLATGLLLSTAMKLPPITLLFLTS---- 140
Cdd:PRK08676  186 GTLNWTELAAHASLLspsVLGASflfifigFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrq 265

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1797022896 141 ---HSLDSTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAIILSYSPKLTLLNFYLYSLVTAAVFLTL 213
Cdd:PRK08676  266 sgaAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGL 341
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 27-260 2.77e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 52.02  E-value: 2.77e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  27 LEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALILFS---------SMTNAWHTGQWDLTQLTHPTSCL-ILTAA 95
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  96 LAMKLGLAPFHFWFPEVLQG--TSLATGLLLSTAMKLPPITLLFLTSHSLDSTLLTT------MAVLSAALGGWVGLNQT 167
Cdd:PRK08376  230 LAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSIYGPAINLATVgwviiiLGCLTMFVGVAMAVVQK 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 168 QIRKILAFSSIAHLGWM------AIILSYSPKLT-------------LLNFYLY----SLVTAAVFLTLNTTKTLKLSTL 224
Cdd:PRK08376  310 DVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggiyhIVNHALYkallFLTAGAVIYETGTRNLNELGGL 389

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1797022896 225 MtswTKTPALNTALLLTLLSLAGLPPLTGFLPKWFI 260
Cdd:PRK08376  390 A---RTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 27-264 8.97e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 50.26  E-value: 8.97e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  27 LEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALILFS-SMTNAwHTGQWDLTQLTH--PTSCLILTA------ALA 97
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTAfgfvllALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  98 MKLGLAPFHFWFPEVLQGTSLATGLLLS-TAMKLP--PITLLFLT-------SHSLDSTLLTTMAVLSAALGGWVGLNQT 167
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAAPPVVTALLSgLVTKVAvyALIRIYFTvfggdfrFALGLGWLLAVLALLSMLVGSLAALGQD 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 168 QIRKILAFSSIAHLGWMAIILSYSPKLTLLNFYLYS-----------LVTAAVFLTLNTTKTLKLSTLMTswtKTPALNT 236
Cdd:PRK08375  294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhalmkgalfLAAGAIEVTYGTRRLSELSGLGR---RMPLTAA 370

                         250       260
                  ....*....|....*....|....*...
gi 1797022896 237 ALLLTLLSLAGLPPLTGFLPKWFILQEL 264
Cdd:PRK08375  371 AFAVASLSLIGVPPTSGFVSKWYLVVGA 398
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 44-186 1.38e-06

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 49.55  E-value: 1.38e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  44 PRAIEAATKYFLVQAAASALILFSSMTNAWHTGQW----DLTQLTHPTSC-----LILTAALAMKLGLAPFHFWFPEV-L 113
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1797022896 114 QGTSLATGLLLSTAMKLPPITL------LFLTSHSLDSTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAI 186
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFlrfnlpLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
49-197 2.83e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 48.93  E-value: 2.83e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  49 AATKYFLVQAAASALILFSSMTNAWHTGQWDL---TQLTH----PTSCLILTA---ALAMKLGLAPFHFWFPEVLQGTSL 118
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGASSFdyePLRSHtlplSTQLLLLAPilvGFGIKIPLVPFHTWLPDAHVEAST 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 119 ATGLLLS-TAMKLPPITLL------FLTSHSLDSTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAIILSYS 191
Cdd:PRK06473  238 PVSVLLAgVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317


                  ....*.
gi 1797022896 192 PKLTLL 197
Cdd:PRK06473  318 TPLSIL 323
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 28-269 3.14e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 48.84  E-value: 3.14e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  28 EINTLAVLPLISKSHHpRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWD-------LTQLTHPTSCLI----LTAAL 96
Cdd:PRK08668  128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDfadisqgLINDTSTGFALIvflfLLAFG 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  97 AMKLGLAPFHFWFPEVLQGTSLATGLLLSTA------------MKLPPITLLFLT-----SHSLDSTLLTTMAVLSAALG 159
Cdd:PRK08668  207 VAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQlsklgaygfllvLYVLPGTKLFSEfgtyrGVPLFNYILAWLGNISIIVG 286

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 160 GWVGLNQTQIRKILAFSSIAHLGWMAIIL----SYSPKLTLLNFYLYSLVTAAVFLTLNT----TKTLKLSTLMTSWTKT 231
Cdd:PRK08668  287 TLMAILQEDIKKLIAYSSVANGGYILVGLglgtSLGFAGGLFHVFNHALFKGLFFLIFAAviyrTGTTKISEMGGLIEKM 366

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1797022896 232 PALNTALLLTLLSLAGLPPLTGFLPKWFILQELTKQDM 269
Cdd:PRK08668  367 PFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 2-186 8.28e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 47.23  E-value: 8.28e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   2 IFTFSLLLgttiTISSNHWAMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALILFSS----------MTN 71
Cdd:PRK06458  116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGD 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  72 AWHTGQW-DLTQLTHPTSCLILTAALAM-------KLGLAPFHFWFP----EVLQGTS-LATGLLLSTAMkLPPITLLFL 138
Cdd:PRK06458  192 GEMAILWtELLKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPdahsEAPSPVSaLLSGVLLNVAL-YAVLRYYIL 270

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1797022896 139 TSHSLDS----TLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAI 186
Cdd:PRK06458  271 IDAAIGSdfpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 44-211 9.51e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 47.12  E-value: 9.51e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  44 PRAIEAATKYFLVQAAASALILFSSMTNAWH----TGQWDLTQLTH---PTSCLILT-----AALAMKLGLAPFHFWFPE 111
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNlplPPGVQYWLflaffIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 112 VLQ-----GTSLATGLLLSTA------MKLPpitLLFLTSHSLdSTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAH 180
Cdd:PRK05846  237 AHVqaptaGSVLLAGILLKMGaygllrFSLP---LFPDASHEF-APIIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1797022896 181 LGW--MAIILSYSPKLTLLNFYLYS--LVTAAVFL 211
Cdd:PRK05846  313 MGFvtLGIFAGNQLGIQGAIFQMIShgLSSAALFL 347
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 285-328 1.18e-05

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 42.24  E-value: 1.18e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1797022896 285 FFYLRLAYCTTITLPPHTTSHMKQWRTNKPTNI-SIAILTTLSIT 328
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTlLLPTLTTLSIL 45
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-188 1.22e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 46.68  E-value: 1.22e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   1 LIFTFSLLLgttITISSNHWAMaWTGLEINTLAVLPLISKSHH-PRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWD 79
Cdd:COG1009   118 LLFMAAMLG---LVLSDNLLLL-FVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLN 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  80 LTQL-----THPTSCLILTAALAM------KLGLAPFHFWFPEVLQGTSLATGLLLSTAM---------KLPPItlLFLT 139
Cdd:COG1009   194 FSELlaaapTILSSPLLTLILLLLllgafgKSAQFPLHFWLPDAMEGPTPVSALLHAATMvkagvyllaRLSPL--FALS 271

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1797022896 140 SHSLdsTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAIIL 188
Cdd:COG1009   272 PVWL--TVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
PRK12650 PRK12650
DUF4040 family protein;
23-257 1.76e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 46.57  E-value: 1.76e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  23 AWtglEINTLAVLPLISKSHhPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWDLTQLTHPTSCL---ILTAALAMK 99
Cdd:PRK12650  138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVWAekpGLTTVVAVL 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 100 LGLA--------PFHFWFPEVLQGTSLATGLLLSTAMKLPPITLLFLTSHSLDST-----LLTTMAVLSAALGGWVGLNQ 166
Cdd:PRK12650  214 IAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVavwnwLLIIVGMITALMGAVFAVQK 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 167 TQIRKILAFSSIAHLGWM-AIILSYSP-KLT--LLNFYLYSLVTAAVFLTL----NTTKTLKLSTLMTSWTKTPALNTAL 238
Cdd:PRK12650  294 TDLKKLTAYSTVSQLGWIvATIGVGTPfALTaaVVHTLAHALFKSSLFMLIgvvdHQAGTRDIRRLGSLWRRMPFTFVSV 373

                         250
                  ....*....|....*....
gi 1797022896 239 LLTLLSLAGLPPLTGFLPK 257
Cdd:PRK12650  374 TIAALSMAAVPPLFGFVSK 392
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 27-261 7.19e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 44.34  E-value: 7.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  27 LEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALILFS-----SMTNAWHTGqwDLTQLTHP--------TSCLILT 93
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  94 AALAMKLGLAPFHFWFPEVLQGTSLATGLLLSTAMKLPPITL------------LFLTSHSLDSTLLTtMAVLSAALGGW 161
Cdd:PRK12662  217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLiirivydvfkanFVFTTLPFNNVFMI-LAALAIVFGSV 295

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 162 VGLNQTQIRKILAFSSIAHLGWMAIILSYSPKLTLLNFYLY----SLVTAAVFLTLNTTK----TLKLSTLMTSWTKTPA 233
Cdd:PRK12662  296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPK 375

                         250       260
                  ....*....|....*....|....*...
gi 1797022896 234 LNTALLLTLLSLAGLPPLTGFLPKWFIL 261
Cdd:PRK12662  376 ITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
49-262 8.18e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 44.32  E-value: 8.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  49 AATKYFLVQAAASALILFSSMTNAWHTGQWD-------LTQLTHPTSCLILTAAL---AMKLGLAPFHFWFPEVLQGTSL 118
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaisTQNLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAYTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 119 ATGLLLSTAM-KLPPITL------LFLTSHSLDSTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAIILSYS 191
Cdd:PRK07363  238 AVAILLGGVLaKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 192 PKLTLLN---------------FYLYSLVTAAVfltlNTTKTLKLSTLMTSWTKTPALNTALLLTLLSLAGLPPLTGFLP 256
Cdd:PRK07363  318 TQLSLLGavaqmishglilallFHLVGIVERKV----GTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVA 393


                  ....*.
gi 1797022896 257 KWFILQ 262
Cdd:PRK07363  394 EFIVFQ 399
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 22-186 2.65e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 42.71  E-value: 2.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  22 MAWtglEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQ--WDLTQLTH---PTSCLILT--- 93
Cdd:PRK12561  114 LMW---ELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLyag 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  94 --AALAMKLGLAPFHFWFPE-----------VLQGTSLATG--LLLSTAMKLPPitllflTSHSLDSTLLTTMAVLSAAL 158
Cdd:PRK12561  191 flIAFGVKLPIFPLHTWLPDahgeasapvsmILAGVLLKMGgyALIRFNVQMLP------DAHVYFAPALAILGVVNIIY 264

                         170       180
                  ....*....|....*....|....*...
gi 1797022896 159 GGWVGLNQTQIRKILAFSSIAHLGWMAI 186
Cdd:PRK12561  265 GALNAFAQDNVKRRLAYSSVSHMGFVLL 292
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 104-261 7.75e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 41.44  E-value: 7.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 104 PFHFWFPEVLQGTSLATGLLLSTAMKLPPITLLFLTSHSLDST-----LLTTMAVLSAALGGWVGLNQTQIRKILAFSSI 178
Cdd:PRK12647  213 PFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYSTV 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 179 AHLGWMAIILSYSPKLTLLNFYLY----SLVTAAVFLTLNT----TKTLKLSTLMTSWTKTPALNTALLLTLLSLAGLPP 250
Cdd:PRK12647  293 SALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIidheTGTRDITKLGGLRRAMPITAAAALLAALSMAGLPP 372

                         170
                  ....*....|.
gi 1797022896 251 LTGFLPKWFIL 261
Cdd:PRK12647  373 LFGFLAKELIY 383
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 99-265 1.22e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 40.71  E-value: 1.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  99 KLGLapfHFWFPEVLQGTSLATGLLLSTAMKLPPITLL-----FLTSHSLDSTLLTTMAVLSAALGGWVGLNQTQIRKIL 173
Cdd:MTH00032  241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMirsfpLFEKAPLTLLIITIFGALTAFFAATVGLVQNDLKKVI 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 174 AFSSIAHLGWMAIILSY--SPKLTLLNFYLYSLVTAAVFL---------TLNTTKTLKLSTLMTSwtkTPALNTALLLTL 242
Cdd:MTH00032  318 AYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLsagsvihstTVDEQDMRKMGGLIHS---IPFTYTMMLIGS 394

                         170       180
                  ....*....|....*....|...
gi 1797022896 243 LSLAGLPPLTGFLPKWFILqELT 265
Cdd:MTH00032  395 FSIMGLPYLTGFYSKDLIL-ELT 416
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 42-257 1.45e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 40.58  E-value: 1.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  42 HHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWDLTQLTHPTS---------------CLILTAAlAMKLGLAPFH 106
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGA-AAKSAQGPFY 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 107 FWFPEVLQGTSLATGLLLSTAMKLPPITLLFLTSHSLDST-----LLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHL 181
Cdd:PRK12649  235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 182 GWMAIILSYS-----------PKLTLLNFYLYS----LVTAAVFLTLNTTKTLKLSTLMTswtKTPALNTALLLTLLSLA 246
Cdd:PRK12649  315 AYLMTMYGYTtyhepglgvaaATFHLLNHATFKaclfLVAGIVAHEAATRDIRKLGGLRK---EMPITFIVASIAALAMA 391

                         250
                  ....*....|.
gi 1797022896 247 GLPPLTGFLPK 257
Cdd:PRK12649  392 GIPPLNGFLSK 402
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 90-257 1.67e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 40.29  E-value: 1.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  90 LILTAALAmKLGLAPFHFWFPEVLQGTSLATGLLLSTAMKLPPITLL------FLTSHSLDSTLLTtMAVLSAALGGWVG 163
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFADVPVWRPTVLV-LGLATMLLGGWRA 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 164 LNQTQIRKILAFSSIAHLGWMAIILSYSPK------LTLLnfYLYSLVTAAVFLTL----NTTKTLKLSTLMTSWTKTPA 233
Cdd:PRK12644  286 LRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVVgiidHSTGTRDIRKLSGLGRRQPV 363

                         170       180
                  ....*....|....*....|....
gi 1797022896 234 LNTALLLTLLSLAGLPPLTGFLPK 257
Cdd:PRK12644  364 LAVVAALAAASMAGLPPLLGFVAK 387
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 27-191 2.86e-03

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 39.19  E-value: 2.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  27 LEINTLAVLPLISKSHHPRAIEAATKYFLVQAAAS------ALILFSsmtnawHTGQWDLT---QLTHPTSCL----ILT 93
Cdd:PRK06525  142 FEITGLCSWALISYYQSPKALRSALKALLITHIGSlglylaAATLFL------QTGTFALSalsGLHGSLKYLvflgILF 215

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  94 AALAMKLGLaPFHFWFPEVLQGTSLATGLLLSTAMKLPPITLLFLTSHSLDS------TLLTTMAVLSAALGGWVGLNQT 167
Cdd:PRK06525  216 AAWGKSAQL-PFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARAIQSMGPiphvigYVGAVMAIVTLLYGFLMYLPQQ 294

                         170       180
                  ....*....|....*....|....
gi 1797022896 168 QIRKILAFSSIAHLGWMAIILSYS 191
Cdd:PRK06525  295 DMKRLLAYSTITQLGYMFFGLSLA 318
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 89-191 4.51e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 38.90  E-value: 4.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  89 CLILTAALAMKLGLAPFHFWFPEVLQGTSLATGLLLSTAMKLPPITLLFLTSHSLDSTLLTTMAV-----LSAALGGWVG 163
Cdd:MTH00020  213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVtivgsLTVFFAATVG 292

                          90       100
                  ....*....|....*....|....*...
gi 1797022896 164 LNQTQIRKILAFSSIAHLGWMAIILSYS 191
Cdd:MTH00020  293 LVQNDLKKVIAYSTCSQLGYMVVACGLS 320
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
7-184 4.87e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 38.53  E-value: 4.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896   7 LLLGTTITISSNHWAM---AW--TGLEINTLavlpLISKSHHPRAIEAATKYFLVQAAASALILFSSMTNAWHTGQWDLT 81
Cdd:PRK08168  109 VLAAVHLLVLSDHLLVliaAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLS 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  82 QL-----THPTS------CLILTAALAMKLGLAPFHFWFPEVLQGTSLATGLLLSTAMKLPPITLL----FLTSHSLDST 146
Cdd:PRK08168  185 ALwahlaAQGASpslqaaALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVVNLGGFVLIrfapLLEQAPPARW 264

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1797022896 147 LLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWM 184
Cdd:PRK08168  265 LLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 49-222 5.17e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 38.53  E-value: 5.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  49 AATKYFLVQAAASALILFSSMTNAWHTG--QWDLTQLTH----PTSCLILTAAL----AMKLGLAPFHFWFPEVL-QGTS 117
Cdd:PRK02546  166 AATKFILYTAGSSLFILLAALAMAFYGDtpTFDMTALAAkdfgLGFQLLCYAGLliayGVKLPIVPLHTWLPDAHgEATA 245

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896 118 LATGLLLSTAMKLPPITLL------FLTSHSLDSTLLTTMAVLSAALGGWVGLNQTQIRKILAFSSIAHLGWMAI-ILSY 190
Cdd:PRK02546  246 PVHMLLAGILLKMGGYALLrmnagmLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIgIGSF 325

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1797022896 191 SPKLT---LLNFYLYSLVTAAVFL----TLNTTKTLKLS 222
Cdd:PRK02546  326 TDLGTsgaMLQMISHGLIGASLFFlvgaTYDRTHTLMLD 364
PHA03140 PHA03140
helicase-primase primase subunit; Provisional
 41-126 7.00e-03

helicase-primase primase subunit; Provisional


Pssm-ID: 222998  Cd Length: 772  Bit Score: 38.38  E-value: 7.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022896  41 SHHPRAIEAATKYFLVQAAASAlilfssmtnAWHTgqWDLTQLTHPTS--CLILTAALAMKLGLAPFHFWFPEVLQgTSL 118
Cdd:PHA03140   68 SRHAGDVTAATLASLCRAASSA---------APDA--WPLEPLGNADTwrCLYGSALATLRRRLGFFSFYSPVRFG-TDT 135


                  ....*...
gi 1797022896 119 ATGLLLST 126
Cdd:PHA03140  136 ATGLLVKA 143
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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